EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000012872 (Gene tree)
Gene ID: 102175917
Gene Symbol: RPUSD1
Alias: C16orf40|MGC19600|RLUCL
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 6364 bases
Position: chr25:599663-606026
Accession: 102175917
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000010312	PseudoU_synth_2	PF00849.22	2.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000018088	RPUSD1-201	5564	XM_018041056	ENSCHIP00000010312	308 (aa)	XP_017896545	UPI000846797D

Gene Model

Click here to download ENSCHIG00000012872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000012872's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000012872	RPUSD1	100	83.654	ENSG00000007376	RPUSD1	100	89.286	Homo_sapiens
ENSCHIG00000012872	RPUSD1	98	59.272	ENSAPOG00000022221	rpusd1	98	59.272	Acanthochromis_polyacanthus
ENSCHIG00000012872	RPUSD1	100	85.390	ENSAMEG00000007461	RPUSD1	100	84.740	Ailuropoda_melanoleuca
ENSCHIG00000012872	RPUSD1	98	60.458	ENSACIG00000015863	rpusd1	98	60.784	Amphilophus_citrinellus
ENSCHIG00000012872	RPUSD1	98	59.016	ENSAOCG00000021975	rpusd1	95	59.016	Amphiprion_ocellaris
ENSCHIG00000012872	RPUSD1	98	59.344	ENSAPEG00000001316	rpusd1	95	59.344	Amphiprion_percula
ENSCHIG00000012872	RPUSD1	79	68.443	ENSATEG00000002984	rpusd1	98	59.672	Anabas_testudineus
ENSCHIG00000012872	RPUSD1	79	62.097	ENSAPLG00000012316	RPUSD1	100	61.538	Anas_platyrhynchos
ENSCHIG00000012872	RPUSD1	99	69.032	ENSACAG00000008953	RPUSD1	100	68.730	Anolis_carolinensis
ENSCHIG00000012872	RPUSD1	100	83.013	ENSANAG00000024709	RPUSD1	100	83.013	Aotus_nancymaae
ENSCHIG00000012872	RPUSD1	98	53.890	ENSACLG00000013692	rpusd1	98	60.912	Astatotilapia_calliptera
ENSCHIG00000012872	RPUSD1	99	61.765	ENSAMXG00000019802	rpusd1	100	60.703	Astyanax_mexicanus
ENSCHIG00000012872	RPUSD1	100	97.727	ENSBTAG00000000179	RPUSD1	100	97.727	Bos_taurus
ENSCHIG00000012872	RPUSD1	100	83.974	ENSCJAG00000012253	RPUSD1	100	83.974	Callithrix_jacchus
ENSCHIG00000012872	RPUSD1	100	85.390	ENSCAFG00000019614	RPUSD1	100	85.714	Canis_familiaris
ENSCHIG00000012872	RPUSD1	100	85.390	ENSCAFG00020008891	RPUSD1	100	85.714	Canis_lupus_dingo
ENSCHIG00000012872	RPUSD1	100	82.637	ENSTSYG00000036934	RPUSD1	100	82.637	Carlito_syrichta
ENSCHIG00000012872	RPUSD1	100	85.714	ENSCAPG00000014219	RPUSD1	100	84.740	Cavia_aperea
ENSCHIG00000012872	RPUSD1	100	85.714	ENSCPOG00000034604	RPUSD1	100	84.740	Cavia_porcellus
ENSCHIG00000012872	RPUSD1	100	85.256	ENSCCAG00000034385	RPUSD1	100	85.256	Cebus_capucinus
ENSCHIG00000012872	RPUSD1	100	85.256	ENSCATG00000042983	RPUSD1	100	85.256	Cercocebus_atys
ENSCHIG00000012872	RPUSD1	100	84.416	ENSCLAG00000013966	RPUSD1	100	84.416	Chinchilla_lanigera
ENSCHIG00000012872	RPUSD1	100	85.256	ENSCSAG00000012121	RPUSD1	100	85.256	Chlorocebus_sabaeus
ENSCHIG00000012872	RPUSD1	99	65.605	ENSCPBG00000021101	RPUSD1	99	66.118	Chrysemys_picta_bellii
ENSCHIG00000012872	RPUSD1	91	87.189	ENSCANG00000028576	RPUSD1	97	87.868	Colobus_angolensis_palliatus
ENSCHIG00000012872	RPUSD1	100	84.416	ENSCGRG00001014253	Rpusd1	100	82.468	Cricetulus_griseus_chok1gshd
ENSCHIG00000012872	RPUSD1	100	84.416	ENSCGRG00000017995	Rpusd1	100	82.468	Cricetulus_griseus_crigri
ENSCHIG00000012872	RPUSD1	99	58.117	ENSCSEG00000018512	rpusd1	100	58.117	Cynoglossus_semilaevis
ENSCHIG00000012872	RPUSD1	98	59.150	ENSCVAG00000022746	rpusd1	98	59.468	Cyprinodon_variegatus
ENSCHIG00000012872	RPUSD1	99	64.262	ENSDARG00000060192	rpusd1	100	63.312	Danio_rerio
ENSCHIG00000012872	RPUSD1	100	82.372	ENSDNOG00000003721	RPUSD1	100	82.166	Dasypus_novemcinctus
ENSCHIG00000012872	RPUSD1	100	86.364	ENSDORG00000026656	Rpusd1	100	87.338	Dipodomys_ordii
ENSCHIG00000012872	RPUSD1	99	45.342	ENSEBUG00000008767	rpusd1	94	45.342	Eptatretus_burgeri
ENSCHIG00000012872	RPUSD1	100	85.443	ENSEASG00005018421	RPUSD1	76	86.392	Equus_asinus_asinus
ENSCHIG00000012872	RPUSD1	82	62.992	ENSELUG00000014307	rpusd1	88	57.377	Esox_lucius
ENSCHIG00000012872	RPUSD1	100	85.065	ENSFCAG00000010359	RPUSD1	100	84.416	Felis_catus
ENSCHIG00000012872	RPUSD1	99	67.869	ENSFALG00000003211	RPUSD1	100	67.869	Ficedula_albicollis
ENSCHIG00000012872	RPUSD1	100	85.390	ENSFDAG00000013398	RPUSD1	100	84.091	Fukomys_damarensis
ENSCHIG00000012872	RPUSD1	98	59.406	ENSFHEG00000004736	rpusd1	98	59.076	Fundulus_heteroclitus
ENSCHIG00000012872	RPUSD1	98	58.553	ENSGMOG00000010756	rpusd1	98	58.553	Gadus_morhua
ENSCHIG00000012872	RPUSD1	99	68.387	ENSGALG00000005315	RPUSD1	100	68.525	Gallus_gallus
ENSCHIG00000012872	RPUSD1	98	59.344	ENSGAFG00000009886	rpusd1	98	60.133	Gambusia_affinis
ENSCHIG00000012872	RPUSD1	81	67.331	ENSGACG00000014276	rpusd1	97	59.736	Gasterosteus_aculeatus
ENSCHIG00000012872	RPUSD1	99	66.343	ENSGAGG00000004181	RPUSD1	99	66.118	Gopherus_agassizii
ENSCHIG00000012872	RPUSD1	100	83.974	ENSGGOG00000013997	RPUSD1	100	83.974	Gorilla_gorilla
ENSCHIG00000012872	RPUSD1	98	58.307	ENSHBUG00000023728	rpusd1	98	60.586	Haplochromis_burtoni
ENSCHIG00000012872	RPUSD1	100	84.091	ENSHGLG00000002595	RPUSD1	100	84.416	Heterocephalus_glaber_female
ENSCHIG00000012872	RPUSD1	100	84.091	ENSHGLG00100014303	RPUSD1	100	84.416	Heterocephalus_glaber_male
ENSCHIG00000012872	RPUSD1	98	58.746	ENSHCOG00000002390	rpusd1	99	58.746	Hippocampus_comes
ENSCHIG00000012872	RPUSD1	99	64.169	ENSIPUG00000001570	rpusd1	99	64.495	Ictalurus_punctatus
ENSCHIG00000012872	RPUSD1	100	88.636	ENSSTOG00000004276	RPUSD1	100	87.338	Ictidomys_tridecemlineatus
ENSCHIG00000012872	RPUSD1	100	86.688	ENSJJAG00000015696	Rpusd1	100	85.390	Jaculus_jaculus
ENSCHIG00000012872	RPUSD1	98	60.465	ENSKMAG00000017287	rpusd1	98	60.133	Kryptolebias_marmoratus
ENSCHIG00000012872	RPUSD1	98	59.672	ENSLBEG00000013354	RPUSD1	98	57.862	Labrus_bergylta
ENSCHIG00000012872	RPUSD1	98	59.672	ENSLBEG00000022502	rpusd1	98	57.862	Labrus_bergylta
ENSCHIG00000012872	RPUSD1	99	64.803	ENSLACG00000008869	RPUSD1	99	64.803	Latimeria_chalumnae
ENSCHIG00000012872	RPUSD1	70	75.463	ENSLOCG00000005682	rpusd1	99	75.463	Lepisosteus_oculatus
ENSCHIG00000012872	RPUSD1	100	82.468	ENSLAFG00000002115	RPUSD1	100	82.143	Loxodonta_africana
ENSCHIG00000012872	RPUSD1	100	85.577	ENSMFAG00000003961	RPUSD1	100	85.577	Macaca_fascicularis
ENSCHIG00000012872	RPUSD1	100	85.577	ENSMMUG00000000842	RPUSD1	100	85.577	Macaca_mulatta
ENSCHIG00000012872	RPUSD1	100	85.577	ENSMNEG00000042712	RPUSD1	100	85.577	Macaca_nemestrina
ENSCHIG00000012872	RPUSD1	100	85.577	ENSMLEG00000030591	RPUSD1	100	85.577	Mandrillus_leucophaeus
ENSCHIG00000012872	RPUSD1	98	60.458	ENSMAMG00000004735	rpusd1	98	60.458	Mastacembelus_armatus
ENSCHIG00000012872	RPUSD1	82	68.775	ENSMZEG00005003214	rpusd1	98	60.912	Maylandia_zebra
ENSCHIG00000012872	RPUSD1	97	67.987	ENSMGAG00000005447	RPUSD1	99	68.000	Meleagris_gallopavo
ENSCHIG00000012872	RPUSD1	85	76.981	ENSMAUG00000019998	Rpusd1	99	76.981	Mesocricetus_auratus
ENSCHIG00000012872	RPUSD1	100	82.278	ENSMICG00000017561	RPUSD1	100	82.595	Microcebus_murinus
ENSCHIG00000012872	RPUSD1	100	85.065	ENSMOCG00000014082	Rpusd1	100	83.766	Microtus_ochrogaster
ENSCHIG00000012872	RPUSD1	80	67.755	ENSMMOG00000012569	rpusd1	99	59.344	Mola_mola
ENSCHIG00000012872	RPUSD1	100	69.872	ENSMODG00000016882	RPUSD1	100	69.872	Monodelphis_domestica
ENSCHIG00000012872	RPUSD1	98	60.131	ENSMALG00000017818	rpusd1	98	59.804	Monopterus_albus
ENSCHIG00000012872	RPUSD1	100	85.714	MGP_CAROLIEiJ_G0021244	Rpusd1	100	84.740	Mus_caroli
ENSCHIG00000012872	RPUSD1	100	86.039	ENSMUSG00000041199	Rpusd1	100	85.065	Mus_musculus
ENSCHIG00000012872	RPUSD1	100	83.226	MGP_PahariEiJ_G0023562	Rpusd1	100	83.226	Mus_pahari
ENSCHIG00000012872	RPUSD1	100	86.039	MGP_SPRETEiJ_G0022155	Rpusd1	100	85.065	Mus_spretus
ENSCHIG00000012872	RPUSD1	100	83.117	ENSMPUG00000015897	RPUSD1	100	84.091	Mustela_putorius_furo
ENSCHIG00000012872	RPUSD1	100	86.218	ENSMLUG00000001089	RPUSD1	100	87.500	Myotis_lucifugus
ENSCHIG00000012872	RPUSD1	100	86.364	ENSNGAG00000003595	Rpusd1	100	85.065	Nannospalax_galili
ENSCHIG00000012872	RPUSD1	81	68.548	ENSNBRG00000006457	rpusd1	98	60.465	Neolamprologus_brichardi
ENSCHIG00000012872	RPUSD1	56	78.286	ENSNLEG00000008424	-	100	78.286	Nomascus_leucogenys
ENSCHIG00000012872	RPUSD1	100	71.061	ENSMEUG00000016049	RPUSD1	100	70.130	Notamacropus_eugenii
ENSCHIG00000012872	RPUSD1	99	75.163	ENSOPRG00000008340	RPUSD1	99	75.163	Ochotona_princeps
ENSCHIG00000012872	RPUSD1	100	82.792	ENSODEG00000016945	RPUSD1	100	82.143	Octodon_degus
ENSCHIG00000012872	RPUSD1	98	57.680	ENSONIG00000015672	rpusd1	99	59.935	Oreochromis_niloticus
ENSCHIG00000012872	RPUSD1	99	60.841	ENSORLG00000013009	rpusd1	99	60.841	Oryzias_latipes
ENSCHIG00000012872	RPUSD1	99	60.518	ENSORLG00020010382	rpusd1	99	60.518	Oryzias_latipes_hni
ENSCHIG00000012872	RPUSD1	99	59.871	ENSORLG00015021354	rpusd1	99	59.871	Oryzias_latipes_hsok
ENSCHIG00000012872	RPUSD1	98	60.465	ENSOMEG00000021426	rpusd1	98	60.465	Oryzias_melastigma
ENSCHIG00000012872	RPUSD1	100	87.500	ENSOGAG00000003795	RPUSD1	100	86.859	Otolemur_garnettii
ENSCHIG00000012872	RPUSD1	100	98.701	ENSOARG00000014254	RPUSD1	100	98.701	Ovis_aries
ENSCHIG00000012872	RPUSD1	100	83.974	ENSPPAG00000034797	RPUSD1	100	83.974	Pan_paniscus
ENSCHIG00000012872	RPUSD1	100	84.416	ENSPPRG00000012389	RPUSD1	100	84.091	Panthera_pardus
ENSCHIG00000012872	RPUSD1	100	84.416	ENSPTIG00000008545	RPUSD1	92	83.766	Panthera_tigris_altaica
ENSCHIG00000012872	RPUSD1	100	83.974	ENSPTRG00000007565	RPUSD1	100	83.974	Pan_troglodytes
ENSCHIG00000012872	RPUSD1	100	84.936	ENSPANG00000024401	RPUSD1	100	84.936	Papio_anubis
ENSCHIG00000012872	RPUSD1	99	61.859	ENSPKIG00000018890	rpusd1	91	61.415	Paramormyrops_kingsleyae
ENSCHIG00000012872	RPUSD1	99	67.857	ENSPSIG00000013945	RPUSD1	100	67.869	Pelodiscus_sinensis
ENSCHIG00000012872	RPUSD1	98	59.136	ENSPMGG00000014950	rpusd1	98	58.553	Periophthalmus_magnuspinnatus
ENSCHIG00000012872	RPUSD1	100	84.740	ENSPEMG00000000497	Rpusd1	100	83.442	Peromyscus_maniculatus_bairdii
ENSCHIG00000012872	RPUSD1	98	53.618	ENSPMAG00000001563	rpusd1	84	60.618	Petromyzon_marinus
ENSCHIG00000012872	RPUSD1	100	70.288	ENSPCIG00000021216	-	94	70.779	Phascolarctos_cinereus
ENSCHIG00000012872	RPUSD1	98	60.328	ENSPFOG00000007946	rpusd1	98	60.465	Poecilia_formosa
ENSCHIG00000012872	RPUSD1	98	60.328	ENSPLAG00000011925	rpusd1	98	60.465	Poecilia_latipinna
ENSCHIG00000012872	RPUSD1	98	59.672	ENSPMEG00000002910	rpusd1	98	59.801	Poecilia_mexicana
ENSCHIG00000012872	RPUSD1	98	61.130	ENSPREG00000019851	rpusd1	98	61.130	Poecilia_reticulata
ENSCHIG00000012872	RPUSD1	100	70.130	ENSPCAG00000002258	RPUSD1	100	69.481	Procavia_capensis
ENSCHIG00000012872	RPUSD1	100	85.897	ENSPCOG00000022582	RPUSD1	100	82.243	Propithecus_coquereli
ENSCHIG00000012872	RPUSD1	100	83.974	ENSPVAG00000013104	RPUSD1	100	83.974	Pteropus_vampyrus
ENSCHIG00000012872	RPUSD1	98	60.465	ENSPNYG00000024076	rpusd1	98	60.797	Pundamilia_nyererei
ENSCHIG00000012872	RPUSD1	98	60.596	ENSPNAG00000013806	rpusd1	100	59.672	Pygocentrus_nattereri
ENSCHIG00000012872	RPUSD1	100	85.714	ENSRNOG00000023639	Rpusd1	100	84.740	Rattus_norvegicus
ENSCHIG00000012872	RPUSD1	100	84.936	ENSRBIG00000030238	RPUSD1	100	84.936	Rhinopithecus_bieti
ENSCHIG00000012872	RPUSD1	100	84.936	ENSRROG00000036663	RPUSD1	100	84.936	Rhinopithecus_roxellana
ENSCHIG00000012872	RPUSD1	100	82.468	ENSSBOG00000033063	RPUSD1	100	83.766	Saimiri_boliviensis_boliviensis
ENSCHIG00000012872	RPUSD1	100	69.010	ENSSHAG00000013500	RPUSD1	100	69.355	Sarcophilus_harrisii
ENSCHIG00000012872	RPUSD1	99	64.474	ENSSFOG00015014394	rpusd1	99	64.474	Scleropages_formosus
ENSCHIG00000012872	RPUSD1	98	59.672	ENSSMAG00000008045	rpusd1	91	59.672	Scophthalmus_maximus
ENSCHIG00000012872	RPUSD1	82	69.170	ENSSDUG00000001829	rpusd1	95	61.639	Seriola_dumerili
ENSCHIG00000012872	RPUSD1	82	69.170	ENSSLDG00000020853	rpusd1	95	61.639	Seriola_lalandi_dorsalis
ENSCHIG00000012872	RPUSD1	54	88.024	ENSSARG00000011187	-	100	88.024	Sorex_araneus
ENSCHIG00000012872	RPUSD1	63	56.186	ENSSPUG00000005119	-	100	56.186	Sphenodon_punctatus
ENSCHIG00000012872	RPUSD1	98	60.656	ENSSPAG00000012708	rpusd1	98	60.984	Stegastes_partitus
ENSCHIG00000012872	RPUSD1	100	88.782	ENSSSCG00000008000	RPUSD1	99	92.607	Sus_scrofa
ENSCHIG00000012872	RPUSD1	83	74.902	ENSTGUG00000015375	RPUSD1	100	74.902	Taeniopygia_guttata
ENSCHIG00000012872	RPUSD1	98	59.804	ENSTRUG00000003041	rpusd1	98	59.477	Takifugu_rubripes
ENSCHIG00000012872	RPUSD1	98	56.291	ENSTNIG00000002660	rpusd1	99	56.291	Tetraodon_nigroviridis
ENSCHIG00000012872	RPUSD1	100	92.308	ENSTTRG00000010167	RPUSD1	100	91.346	Tursiops_truncatus
ENSCHIG00000012872	RPUSD1	100	85.390	ENSUAMG00000012736	RPUSD1	100	85.714	Ursus_americanus
ENSCHIG00000012872	RPUSD1	100	85.390	ENSUMAG00000021174	RPUSD1	100	85.714	Ursus_maritimus
ENSCHIG00000012872	RPUSD1	100	85.065	ENSVVUG00000012357	RPUSD1	100	85.065	Vulpes_vulpes
ENSCHIG00000012872	RPUSD1	100	62.903	ENSXETG00000007184	rpusd1	100	61.709	Xenopus_tropicalis
ENSCHIG00000012872	RPUSD1	98	59.468	ENSXCOG00000017930	rpusd1	98	59.468	Xiphophorus_couchianus
ENSCHIG00000012872	RPUSD1	98	60.465	ENSXMAG00000024084	rpusd1	98	60.465	Xiphophorus_maculatus