EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000012952 (Gene tree)
Gene ID: 102172215
Gene Symbol: PUM1
Alias: KIAA0099|PUMH1
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 121337 bases
Position: chr2:13316917-13438253
Accession: 102172215
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	1	8
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	2	8
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	3	8
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	4	8
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	5	8
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	6	8
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	7	8
ENSCHIP00000010476	PUF	PF00806.19	1.3e-71	8	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	1	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	2	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	3	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	4	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	5	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	6	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	7	8
ENSCHIP00000010469	PUF	PF00806.19	1.4e-71	8	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	1	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	2	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	3	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	4	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	5	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	6	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	7	8
ENSCHIP00000010460	PUF	PF00806.19	2.7e-71	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000018255	PUM1-203	7461	XM_005676743	ENSCHIP00000010476	1090 (aa)	XP_005676800	UPI000D193F2A
ENSCHIT00000018248	PUM1-202	7512	XM_013973718	ENSCHIP00000010469	1107 (aa)	XP_013829172	UPI000D18E6E2
ENSCHIT00000018239	PUM1-201	7749	XM_005676737	ENSCHIP00000010460	1186 (aa)	XP_005676794	UPI0000EBC45E

Gene Model

Click here to download ENSCHIG00000012952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000012952's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000012952	PUM1	86	87.765	ENSCHIG00000022180	PUM2	100	89.320

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000012952	PUM1	100	99.757	ENSG00000134644	PUM1	100	100.000	Homo_sapiens
ENSCHIG00000012952	PUM1	90	92.010	ENSAPOG00000021632	pum1	100	91.525	Acanthochromis_polyacanthus
ENSCHIG00000012952	PUM1	100	99.517	ENSAMEG00000017656	PUM1	97	99.244	Ailuropoda_melanoleuca
ENSCHIG00000012952	PUM1	100	76.409	ENSACIG00000021013	pum1	100	76.846	Amphilophus_citrinellus
ENSCHIG00000012952	PUM1	90	92.010	ENSAOCG00000003944	pum1	100	79.559	Amphiprion_ocellaris
ENSCHIG00000012952	PUM1	90	92.010	ENSAPEG00000014550	pum1	100	79.559	Amphiprion_percula
ENSCHIG00000012952	PUM1	100	91.566	ENSATEG00000016004	pum1	100	91.525	Anabas_testudineus
ENSCHIG00000012952	PUM1	100	98.309	ENSAPLG00000009351	PUM1	100	97.393	Anas_platyrhynchos
ENSCHIG00000012952	PUM1	100	98.551	ENSACAG00000000682	PUM1	98	95.623	Anolis_carolinensis
ENSCHIG00000012952	PUM1	100	99.515	ENSANAG00000027865	PUM1	100	100.000	Aotus_nancymaae
ENSCHIG00000012952	PUM1	90	76.738	ENSACLG00000019354	pum1	100	79.001	Astatotilapia_calliptera
ENSCHIG00000012952	PUM1	100	80.588	ENSAMXG00000020607	pum1	92	92.754	Astyanax_mexicanus
ENSCHIG00000012952	PUM1	100	100.000	ENSBTAG00000018979	PUM1	100	100.000	Bos_taurus
ENSCHIG00000012952	PUM1	100	99.368	ENSCJAG00000006035	PUM1	100	100.000	Callithrix_jacchus
ENSCHIG00000012952	PUM1	100	99.517	ENSCAFG00000011205	PUM1	100	97.056	Canis_familiaris
ENSCHIG00000012952	PUM1	92	97.535	ENSCAFG00020024616	PUM1	98	100.000	Canis_lupus_dingo
ENSCHIG00000012952	PUM1	100	99.275	ENSTSYG00000008868	PUM1	100	99.306	Carlito_syrichta
ENSCHIG00000012952	PUM1	100	98.823	ENSCPOG00000031613	PUM1	100	99.306	Cavia_porcellus
ENSCHIG00000012952	PUM1	100	99.359	ENSCATG00000017991	PUM1	100	100.000	Cercocebus_atys
ENSCHIG00000012952	PUM1	100	99.097	ENSCLAG00000007662	PUM1	100	99.306	Chinchilla_lanigera
ENSCHIG00000012952	PUM1	100	99.275	ENSCSAG00000001028	PUM1	100	98.417	Chlorocebus_sabaeus
ENSCHIG00000012952	PUM1	99	96.259	ENSCHOG00000010245	PUM1	93	96.259	Choloepus_hoffmanni
ENSCHIG00000012952	PUM1	100	98.309	ENSCPBG00000009288	PUM1	100	98.786	Chrysemys_picta_bellii
ENSCHIG00000012952	PUM1	100	99.458	ENSCANG00000042606	PUM1	100	100.000	Colobus_angolensis_palliatus
ENSCHIG00000012952	PUM1	100	98.904	ENSCGRG00001024949	Pum1	100	99.306	Cricetulus_griseus_chok1gshd
ENSCHIG00000012952	PUM1	100	98.904	ENSCGRG00000014197	Pum1	100	99.306	Cricetulus_griseus_crigri
ENSCHIG00000012952	PUM1	89	92.010	ENSCSEG00000015981	pum1	93	91.525	Cynoglossus_semilaevis
ENSCHIG00000012952	PUM1	100	75.783	ENSCVAG00000007043	pum1	100	75.785	Cyprinodon_variegatus
ENSCHIG00000012952	PUM1	100	92.995	ENSDARG00000099256	pum1	95	93.750	Danio_rerio
ENSCHIG00000012952	PUM1	100	99.034	ENSDNOG00000010939	PUM1	100	98.907	Dasypus_novemcinctus
ENSCHIG00000012952	PUM1	89	98.279	ENSDORG00000001875	Pum1	100	99.272	Dipodomys_ordii
ENSCHIG00000012952	PUM1	87	95.349	ENSETEG00000004355	PUM1	87	93.848	Echinops_telfairi
ENSCHIG00000012952	PUM1	100	99.158	ENSEASG00005010813	PUM1	100	99.158	Equus_asinus_asinus
ENSCHIG00000012952	PUM1	100	99.034	ENSECAG00000021369	PUM1	100	98.991	Equus_caballus
ENSCHIG00000012952	PUM1	79	100.000	ENSEEUG00000003871	PUM1	74	100.000	Erinaceus_europaeus
ENSCHIG00000012952	PUM1	100	78.225	ENSELUG00000002409	pum1	95	93.237	Esox_lucius
ENSCHIG00000012952	PUM1	100	99.517	ENSFCAG00000010374	PUM1	100	100.000	Felis_catus
ENSCHIG00000012952	PUM1	100	98.551	ENSFALG00000001214	PUM1	97	95.980	Ficedula_albicollis
ENSCHIG00000012952	PUM1	100	98.823	ENSFDAG00000011319	PUM1	100	99.306	Fukomys_damarensis
ENSCHIG00000012952	PUM1	91	91.084	ENSGMOG00000010491	pum1	94	90.602	Gadus_morhua
ENSCHIG00000012952	PUM1	100	98.551	ENSGALG00000042598	PUM1	100	97.713	Gallus_gallus
ENSCHIG00000012952	PUM1	90	88.222	ENSGAFG00000015617	pum1	100	90.799	Gambusia_affinis
ENSCHIG00000012952	PUM1	100	76.507	ENSGACG00000005717	pum1	100	76.359	Gasterosteus_aculeatus
ENSCHIG00000012952	PUM1	100	98.309	ENSGAGG00000001290	PUM1	99	98.381	Gopherus_agassizii
ENSCHIG00000012952	PUM1	100	99.458	ENSGGOG00000011983	PUM1	100	100.000	Gorilla_gorilla
ENSCHIG00000012952	PUM1	100	76.200	ENSHBUG00000018718	pum1	100	76.364	Haplochromis_burtoni
ENSCHIG00000012952	PUM1	100	98.654	ENSHGLG00000013819	Pum1	100	98.654	Heterocephalus_glaber_female
ENSCHIG00000012952	PUM1	100	98.654	ENSHGLG00100008621	Pum1	100	98.654	Heterocephalus_glaber_male
ENSCHIG00000012952	PUM1	100	92.029	ENSIPUG00000020421	pum1	93	92.029	Ictalurus_punctatus
ENSCHIG00000012952	PUM1	100	99.327	ENSSTOG00000010757	PUM1	100	100.000	Ictidomys_tridecemlineatus
ENSCHIG00000012952	PUM1	100	98.906	ENSJJAG00000000530	Pum1	100	100.000	Jaculus_jaculus
ENSCHIG00000012952	PUM1	100	75.887	ENSKMAG00000003481	pum1	100	75.950	Kryptolebias_marmoratus
ENSCHIG00000012952	PUM1	100	91.566	ENSLBEG00000002527	pum1	94	91.084	Labrus_bergylta
ENSCHIG00000012952	PUM1	100	87.530	ENSLACG00000017188	PUM1	99	86.511	Latimeria_chalumnae
ENSCHIG00000012952	PUM1	100	96.377	ENSLOCG00000005210	pum1	95	96.377	Lepisosteus_oculatus
ENSCHIG00000012952	PUM1	100	98.792	ENSLAFG00000003178	PUM1	100	98.654	Loxodonta_africana
ENSCHIG00000012952	PUM1	100	99.369	ENSMFAG00000010291	PUM1	100	100.000	Macaca_fascicularis
ENSCHIG00000012952	PUM1	100	99.458	ENSMMUG00000013520	PUM1	100	100.000	Macaca_mulatta
ENSCHIG00000012952	PUM1	100	99.458	ENSMNEG00000034639	PUM1	100	100.000	Macaca_nemestrina
ENSCHIG00000012952	PUM1	100	99.458	ENSMLEG00000038743	PUM1	100	100.000	Mandrillus_leucophaeus
ENSCHIG00000012952	PUM1	100	91.325	ENSMAMG00000011606	pum1	94	90.843	Mastacembelus_armatus
ENSCHIG00000012952	PUM1	100	76.200	ENSMZEG00005005834	pum1	100	76.364	Maylandia_zebra
ENSCHIG00000012952	PUM1	100	98.551	ENSMGAG00000000724	PUM1	100	97.438	Meleagris_gallopavo
ENSCHIG00000012952	PUM1	100	98.810	ENSMAUG00000022090	Pum1	100	99.306	Mesocricetus_auratus
ENSCHIG00000012952	PUM1	100	99.278	ENSMICG00000007713	-	100	99.515	Microcebus_murinus
ENSCHIG00000012952	PUM1	100	96.661	ENSMICG00000012213	-	100	96.661	Microcebus_murinus
ENSCHIG00000012952	PUM1	100	98.654	ENSMOCG00000015463	Pum1	100	98.654	Microtus_ochrogaster
ENSCHIG00000012952	PUM1	90	88.684	ENSMMOG00000019817	pum1	100	91.283	Mola_mola
ENSCHIG00000012952	PUM1	100	97.826	ENSMODG00000017067	PUM1	100	97.647	Monodelphis_domestica
ENSCHIG00000012952	PUM1	90	88.915	ENSMALG00000016399	pum1	100	91.525	Monopterus_albus
ENSCHIG00000012952	PUM1	100	99.029	MGP_CAROLIEiJ_G0026549	Pum1	100	98.651	Mus_caroli
ENSCHIG00000012952	PUM1	100	99.272	ENSMUSG00000028580	Pum1	100	99.306	Mus_musculus
ENSCHIG00000012952	PUM1	100	99.272	MGP_PahariEiJ_G0028881	Pum1	100	99.306	Mus_pahari
ENSCHIG00000012952	PUM1	100	99.272	MGP_SPRETEiJ_G0027529	Pum1	100	99.306	Mus_spretus
ENSCHIG00000012952	PUM1	100	99.074	ENSMPUG00000015454	PUM1	100	99.074	Mustela_putorius_furo
ENSCHIG00000012952	PUM1	100	100.000	ENSMLUG00000006490	PUM1	100	99.242	Myotis_lucifugus
ENSCHIG00000012952	PUM1	100	99.074	ENSNGAG00000002378	Pum1	100	99.251	Nannospalax_galili
ENSCHIG00000012952	PUM1	87	81.762	ENSNBRG00000010689	pum1	100	83.911	Neolamprologus_brichardi
ENSCHIG00000012952	PUM1	100	97.980	ENSNLEG00000001151	PUM1	100	99.306	Nomascus_leucogenys
ENSCHIG00000012952	PUM1	76	96.959	ENSMEUG00000000976	-	75	96.959	Notamacropus_eugenii
ENSCHIG00000012952	PUM1	84	99.203	ENSOPRG00000001776	PUM1	72	99.203	Ochotona_princeps
ENSCHIG00000012952	PUM1	100	98.822	ENSODEG00000003465	PUM1	100	98.822	Octodon_degus
ENSCHIG00000012952	PUM1	100	76.605	ENSONIG00000002290	pum1	93	90.843	Oreochromis_niloticus
ENSCHIG00000012952	PUM1	80	83.077	ENSOANG00000004902	-	100	77.971	Ornithorhynchus_anatinus
ENSCHIG00000012952	PUM1	100	98.905	ENSOCUG00000008641	PUM1	99	98.905	Oryctolagus_cuniculus
ENSCHIG00000012952	PUM1	100	77.053	ENSORLG00000011482	pum1	94	90.602	Oryzias_latipes
ENSCHIG00000012952	PUM1	100	77.158	ENSORLG00020019461	pum1	100	76.112	Oryzias_latipes_hni
ENSCHIG00000012952	PUM1	100	77.027	ENSORLG00015011375	pum1	100	76.194	Oryzias_latipes_hsok
ENSCHIG00000012952	PUM1	90	93.220	ENSOMEG00000009312	pum1	100	77.326	Oryzias_melastigma
ENSCHIG00000012952	PUM1	100	96.306	ENSOGAG00000011063	PUM1	100	96.306	Otolemur_garnettii
ENSCHIG00000012952	PUM1	100	99.910	ENSOARG00000001899	PUM1	100	100.000	Ovis_aries
ENSCHIG00000012952	PUM1	100	99.458	ENSPPAG00000044003	PUM1	100	100.000	Pan_paniscus
ENSCHIG00000012952	PUM1	100	99.633	ENSPPRG00000001370	PUM1	100	100.000	Panthera_pardus
ENSCHIG00000012952	PUM1	100	99.517	ENSPTIG00000010798	PUM1	100	100.000	Panthera_tigris_altaica
ENSCHIG00000012952	PUM1	100	99.458	ENSPTRG00000000453	PUM1	100	100.000	Pan_troglodytes
ENSCHIG00000012952	PUM1	100	99.450	ENSPANG00000016338	PUM1	100	100.000	Papio_anubis
ENSCHIG00000012952	PUM1	100	79.239	ENSPKIG00000010578	pum1	93	93.478	Paramormyrops_kingsleyae
ENSCHIG00000012952	PUM1	100	98.309	ENSPSIG00000014118	PUM1	100	97.811	Pelodiscus_sinensis
ENSCHIG00000012952	PUM1	78	92.252	ENSPMGG00000005836	pum1	100	82.353	Periophthalmus_magnuspinnatus
ENSCHIG00000012952	PUM1	100	98.823	ENSPEMG00000010009	Pum1	100	99.306	Peromyscus_maniculatus_bairdii
ENSCHIG00000012952	PUM1	100	97.826	ENSPCIG00000014151	PUM1	100	97.826	Phascolarctos_cinereus
ENSCHIG00000012952	PUM1	94	90.843	ENSPFOG00000007289	pum1	93	90.361	Poecilia_formosa
ENSCHIG00000012952	PUM1	100	90.843	ENSPLAG00000007256	pum1	94	90.361	Poecilia_latipinna
ENSCHIG00000012952	PUM1	90	77.419	ENSPMEG00000019543	pum1	99	78.381	Poecilia_mexicana
ENSCHIG00000012952	PUM1	100	76.722	ENSPREG00000005195	pum1	100	81.409	Poecilia_reticulata
ENSCHIG00000012952	PUM1	100	99.275	ENSPPYG00000001621	PUM1	100	97.442	Pongo_abelii
ENSCHIG00000012952	PUM1	84	99.174	ENSPCAG00000001979	PUM1	74	99.174	Procavia_capensis
ENSCHIG00000012952	PUM1	100	99.278	ENSPCOG00000004398	PUM1	100	99.515	Propithecus_coquereli
ENSCHIG00000012952	PUM1	100	97.222	ENSPVAG00000005207	PUM1	97	97.222	Pteropus_vampyrus
ENSCHIG00000012952	PUM1	100	76.305	ENSPNYG00000009518	pum1	100	81.840	Pundamilia_nyererei
ENSCHIG00000012952	PUM1	100	92.995	ENSPNAG00000026728	pum1	95	92.995	Pygocentrus_nattereri
ENSCHIG00000012952	PUM1	100	99.272	ENSRNOG00000011709	Pum1	100	98.904	Rattus_norvegicus
ENSCHIG00000012952	PUM1	100	99.411	ENSRBIG00000042521	PUM1	100	100.000	Rhinopithecus_bieti
ENSCHIG00000012952	PUM1	100	99.757	ENSRROG00000020156	PUM1	100	100.000	Rhinopithecus_roxellana
ENSCHIG00000012952	PUM1	100	99.458	ENSSBOG00000032037	PUM1	100	100.000	Saimiri_boliviensis_boliviensis
ENSCHIG00000012952	PUM1	100	97.826	ENSSHAG00000010918	PUM1	100	97.563	Sarcophilus_harrisii
ENSCHIG00000012952	PUM1	100	91.566	ENSSMAG00000010918	pum1	100	91.525	Scophthalmus_maximus
ENSCHIG00000012952	PUM1	100	91.566	ENSSDUG00000009021	pum1	94	91.084	Seriola_dumerili
ENSCHIG00000012952	PUM1	95	91.566	ENSSLDG00000009667	pum1	93	91.084	Seriola_lalandi_dorsalis
ENSCHIG00000012952	PUM1	97	98.094	ENSSARG00000003055	PUM1	91	100.000	Sorex_araneus
ENSCHIG00000012952	PUM1	100	98.551	ENSSPUG00000006267	PUM1	100	97.054	Sphenodon_punctatus
ENSCHIG00000012952	PUM1	90	92.010	ENSSPAG00000016636	pum1	100	79.559	Stegastes_partitus
ENSCHIG00000012952	PUM1	100	99.797	ENSSSCG00000003591	PUM1	100	100.000	Sus_scrofa
ENSCHIG00000012952	PUM1	100	91.566	ENSTRUG00000013121	pum1	94	91.084	Takifugu_rubripes
ENSCHIG00000012952	PUM1	100	91.346	ENSTNIG00000016983	pum1	93	90.865	Tetraodon_nigroviridis
ENSCHIG00000012952	PUM1	93	95.122	ENSTBEG00000013810	PUM1	89	95.122	Tupaia_belangeri
ENSCHIG00000012952	PUM1	92	99.544	ENSTTRG00000007436	PUM1	90	99.544	Tursiops_truncatus
ENSCHIG00000012952	PUM1	99	99.261	ENSUAMG00000018262	-	100	99.261	Ursus_americanus
ENSCHIG00000012952	PUM1	100	99.369	ENSUMAG00000009211	PUM1	100	99.517	Ursus_maritimus
ENSCHIG00000012952	PUM1	92	99.661	ENSVPAG00000005902	PUM1	92	99.661	Vicugna_pacos
ENSCHIG00000012952	PUM1	100	100.000	ENSVVUG00000014631	PUM1	100	99.517	Vulpes_vulpes
ENSCHIG00000012952	PUM1	100	89.130	ENSXETG00000012904	pum1	99	86.398	Xenopus_tropicalis
ENSCHIG00000012952	PUM1	100	75.783	ENSXMAG00000002945	pum1	100	78.031	Xiphophorus_maculatus