EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000014146 (Gene tree)
Gene ID: 102173160
Gene Symbol: RBM28
Alias: FLJ10377
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 34787 bases
Position: chr4:27590041-27624827
Accession: 102173160
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000012345	RRM_1	PF00076.22	8e-59	1	4
ENSCHIP00000012345	RRM_1	PF00076.22	8e-59	2	4
ENSCHIP00000012345	RRM_1	PF00076.22	8e-59	3	4
ENSCHIP00000012345	RRM_1	PF00076.22	8e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000020135	RBM28-201	5855	XM_005679435	ENSCHIP00000012345	753 (aa)	XP_005679492	UPI0008476E0C

Gene Model

Click here to download ENSCHIG00000014146's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000014146's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000014146	RBM28	67	33.516	ENSCHIG00000025759	PABPC1L	53	32.447

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000014146	RBM28	100	84.363	ENSG00000106344	RBM28	100	100.000	Homo_sapiens
ENSCHIG00000014146	RBM28	57	55.708	ENSAPOG00000015512	rbm28	63	54.167	Acanthochromis_polyacanthus
ENSCHIG00000014146	RBM28	99	94.444	ENSAMEG00000004776	RBM28	92	94.444	Ailuropoda_melanoleuca
ENSCHIG00000014146	RBM28	56	55.952	ENSACIG00000023153	rbm28	99	51.915	Amphilophus_citrinellus
ENSCHIG00000014146	RBM28	57	55.708	ENSAOCG00000000462	rbm28	62	54.545	Amphiprion_ocellaris
ENSCHIG00000014146	RBM28	57	55.479	ENSAPEG00000012996	rbm28	62	54.088	Amphiprion_percula
ENSCHIG00000014146	RBM28	59	52.017	ENSATEG00000001672	rbm28	66	50.992	Anabas_testudineus
ENSCHIG00000014146	RBM28	100	84.768	ENSANAG00000033922	RBM28	100	84.106	Aotus_nancymaae
ENSCHIG00000014146	RBM28	100	51.450	ENSACLG00000025024	rbm28	100	51.588	Astatotilapia_calliptera
ENSCHIG00000014146	RBM28	58	58.124	ENSAMXG00000000763	rbm28	99	58.904	Astyanax_mexicanus
ENSCHIG00000014146	RBM28	100	95.219	ENSBTAG00000017001	RBM28	100	100.000	Bos_taurus
ENSCHIG00000014146	RBM28	100	83.071	ENSCJAG00000017731	RBM28	100	82.415	Callithrix_jacchus
ENSCHIG00000014146	RBM28	100	85.392	ENSCAFG00000001667	RBM28	100	85.525	Canis_familiaris
ENSCHIG00000014146	RBM28	100	85.392	ENSCAFG00020021648	RBM28	100	85.525	Canis_lupus_dingo
ENSCHIG00000014146	RBM28	100	81.806	ENSTSYG00000002892	RBM28	100	95.000	Carlito_syrichta
ENSCHIG00000014146	RBM28	83	59.585	ENSCAPG00000013218	RBM28	99	59.840	Cavia_aperea
ENSCHIG00000014146	RBM28	100	80.475	ENSCPOG00000006253	RBM28	100	80.475	Cavia_porcellus
ENSCHIG00000014146	RBM28	100	83.136	ENSCCAG00000035105	RBM28	100	83.004	Cebus_capucinus
ENSCHIG00000014146	RBM28	100	83.465	ENSCATG00000040497	RBM28	100	97.500	Cercocebus_atys
ENSCHIG00000014146	RBM28	100	79.150	ENSCLAG00000003707	RBM28	100	79.283	Chinchilla_lanigera
ENSCHIG00000014146	RBM28	100	83.794	ENSCSAG00000010161	RBM28	100	83.136	Chlorocebus_sabaeus
ENSCHIG00000014146	RBM28	57	90.323	ENSCHOG00000001994	-	63	90.323	Choloepus_hoffmanni
ENSCHIG00000014146	RBM28	50	61.574	ENSCPBG00000018088	RBM28	82	61.261	Chrysemys_picta_bellii
ENSCHIG00000014146	RBM28	92	84.981	ENSCANG00000038397	RBM28	100	100.000	Colobus_angolensis_palliatus
ENSCHIG00000014146	RBM28	66	81.288	ENSCGRG00001021278	Rbm28	100	77.621	Cricetulus_griseus_chok1gshd
ENSCHIG00000014146	RBM28	100	79.685	ENSCGRG00000005098	Rbm28	100	79.843	Cricetulus_griseus_crigri
ENSCHIG00000014146	RBM28	100	48.928	ENSCSEG00000004212	rbm28	100	47.940	Cynoglossus_semilaevis
ENSCHIG00000014146	RBM28	59	54.911	ENSCVAG00000010493	rbm28	62	53.556	Cyprinodon_variegatus
ENSCHIG00000014146	RBM28	88	56.757	ENSDARG00000025332	rbm28	100	51.163	Danio_rerio
ENSCHIG00000014146	RBM28	100	84.037	ENSDNOG00000001124	RBM28	100	84.565	Dasypus_novemcinctus
ENSCHIG00000014146	RBM28	65	81.048	ENSDORG00000004184	Rbm28	97	81.048	Dipodomys_ordii
ENSCHIG00000014146	RBM28	65	40.244	FBgn0260456	CG4806	66	38.900	Drosophila_melanogaster
ENSCHIG00000014146	RBM28	100	72.487	ENSETEG00000007130	RBM28	99	72.751	Echinops_telfairi
ENSCHIG00000014146	RBM28	99	40.819	ENSEBUG00000004419	rbm28	92	47.120	Eptatretus_burgeri
ENSCHIG00000014146	RBM28	100	84.876	ENSEASG00005008528	RBM28	100	85.398	Equus_asinus_asinus
ENSCHIG00000014146	RBM28	100	84.245	ENSECAG00000007745	RBM28	100	84.635	Equus_caballus
ENSCHIG00000014146	RBM28	100	75.360	ENSEEUG00000002389	RBM28	100	75.885	Erinaceus_europaeus
ENSCHIG00000014146	RBM28	100	52.351	ENSELUG00000020602	rbm28	100	51.828	Esox_lucius
ENSCHIG00000014146	RBM28	100	84.462	ENSFCAG00000000946	RBM28	100	100.000	Felis_catus
ENSCHIG00000014146	RBM28	100	82.470	ENSFDAG00000010169	RBM28	100	81.806	Fukomys_damarensis
ENSCHIG00000014146	RBM28	90	53.456	ENSGMOG00000007091	rbm28	64	51.852	Gadus_morhua
ENSCHIG00000014146	RBM28	59	54.846	ENSGAFG00000004802	rbm28	96	55.882	Gambusia_affinis
ENSCHIG00000014146	RBM28	58	55.172	ENSGACG00000012612	rbm28	100	50.590	Gasterosteus_aculeatus
ENSCHIG00000014146	RBM28	68	80.769	ENSGAGG00000008873	RBM28	93	80.769	Gopherus_agassizii
ENSCHIG00000014146	RBM28	95	83.495	ENSGGOG00000004644	RBM28	97	83.218	Gorilla_gorilla
ENSCHIG00000014146	RBM28	91	52.107	ENSHBUG00000009611	rbm28	94	53.043	Haplochromis_burtoni
ENSCHIG00000014146	RBM28	100	81.939	ENSHGLG00000005409	RBM28	100	81.686	Heterocephalus_glaber_female
ENSCHIG00000014146	RBM28	100	81.939	ENSHGLG00100016458	RBM28	100	81.541	Heterocephalus_glaber_male
ENSCHIG00000014146	RBM28	99	43.215	ENSHCOG00000010597	rbm28	90	49.215	Hippocampus_comes
ENSCHIG00000014146	RBM28	56	49.173	ENSIPUG00000007103	rbm28	93	45.666	Ictalurus_punctatus
ENSCHIG00000014146	RBM28	100	81.854	ENSSTOG00000002169	RBM28	100	82.376	Ictidomys_tridecemlineatus
ENSCHIG00000014146	RBM28	100	73.464	ENSJJAG00000022400	Rbm28	100	74.474	Jaculus_jaculus
ENSCHIG00000014146	RBM28	58	55.830	ENSKMAG00000013348	rbm28	62	54.025	Kryptolebias_marmoratus
ENSCHIG00000014146	RBM28	59	56.000	ENSLBEG00000012998	rbm28	100	50.383	Labrus_bergylta
ENSCHIG00000014146	RBM28	74	58.156	ENSLACG00000010485	-	100	57.143	Latimeria_chalumnae
ENSCHIG00000014146	RBM28	91	62.371	ENSLOCG00000015541	rbm28	79	62.887	Lepisosteus_oculatus
ENSCHIG00000014146	RBM28	100	82.299	ENSLAFG00000010717	RBM28	100	81.818	Loxodonta_africana
ENSCHIG00000014146	RBM28	100	83.858	ENSMFAG00000031036	RBM28	100	97.500	Macaca_fascicularis
ENSCHIG00000014146	RBM28	100	83.617	ENSMMUG00000007250	RBM28	100	97.500	Macaca_mulatta
ENSCHIG00000014146	RBM28	100	83.487	ENSMNEG00000036970	RBM28	100	97.500	Macaca_nemestrina
ENSCHIG00000014146	RBM28	84	83.404	ENSMLEG00000037717	RBM28	100	83.191	Mandrillus_leucophaeus
ENSCHIG00000014146	RBM28	100	51.658	ENSMAMG00000008525	rbm28	100	52.078	Mastacembelus_armatus
ENSCHIG00000014146	RBM28	93	50.676	ENSMZEG00005019625	rbm28	100	49.864	Maylandia_zebra
ENSCHIG00000014146	RBM28	100	76.735	ENSMAUG00000002263	Rbm28	100	76.735	Mesocricetus_auratus
ENSCHIG00000014146	RBM28	93	80.332	ENSMICG00000000107	RBM28	100	80.886	Microcebus_murinus
ENSCHIG00000014146	RBM28	100	80.132	ENSMOCG00000014615	Rbm28	100	80.132	Microtus_ochrogaster
ENSCHIG00000014146	RBM28	58	54.943	ENSMMOG00000008600	rbm28	99	51.464	Mola_mola
ENSCHIG00000014146	RBM28	100	72.941	ENSMODG00000015151	RBM28	100	72.906	Monodelphis_domestica
ENSCHIG00000014146	RBM28	59	53.452	ENSMALG00000006419	rbm28	62	51.245	Monopterus_albus
ENSCHIG00000014146	RBM28	100	79.045	MGP_CAROLIEiJ_G0028162	Rbm28	100	79.045	Mus_caroli
ENSCHIG00000014146	RBM28	100	79.045	ENSMUSG00000029701	Rbm28	100	78.912	Mus_musculus
ENSCHIG00000014146	RBM28	100	79.841	MGP_PahariEiJ_G0021920	Rbm28	100	79.841	Mus_pahari
ENSCHIG00000014146	RBM28	100	79.310	MGP_SPRETEiJ_G0029162	Rbm28	100	79.178	Mus_spretus
ENSCHIG00000014146	RBM28	100	84.565	ENSMPUG00000006511	RBM28	100	83.905	Mustela_putorius_furo
ENSCHIG00000014146	RBM28	100	84.383	ENSMLUG00000002186	RBM28	100	84.777	Myotis_lucifugus
ENSCHIG00000014146	RBM28	100	77.291	ENSNGAG00000017946	-	100	76.627	Nannospalax_galili
ENSCHIG00000014146	RBM28	100	79.283	ENSNGAG00000006480	-	100	78.884	Nannospalax_galili
ENSCHIG00000014146	RBM28	100	82.614	ENSNLEG00000012307	RBM28	100	100.000	Nomascus_leucogenys
ENSCHIG00000014146	RBM28	80	83.436	ENSMEUG00000009611	RBM28	83	83.436	Notamacropus_eugenii
ENSCHIG00000014146	RBM28	90	76.493	ENSOPRG00000015140	RBM28	90	76.879	Ochotona_princeps
ENSCHIG00000014146	RBM28	77	84.887	ENSODEG00000013217	-	82	85.751	Octodon_degus
ENSCHIG00000014146	RBM28	100	77.556	ENSODEG00000003213	-	100	77.556	Octodon_degus
ENSCHIG00000014146	RBM28	59	53.796	ENSONIG00000014924	rbm28	62	54.545	Oreochromis_niloticus
ENSCHIG00000014146	RBM28	100	64.129	ENSOANG00000000815	-	100	63.707	Ornithorhynchus_anatinus
ENSCHIG00000014146	RBM28	100	79.922	ENSOCUG00000003009	RBM28	100	80.052	Oryctolagus_cuniculus
ENSCHIG00000014146	RBM28	59	55.357	ENSORLG00000009636	rbm28	63	53.556	Oryzias_latipes
ENSCHIG00000014146	RBM28	59	55.804	ENSORLG00020002123	rbm28	65	53.390	Oryzias_latipes_hni
ENSCHIG00000014146	RBM28	86	60.766	ENSORLG00015015030	rbm28	97	60.680	Oryzias_latipes_hsok
ENSCHIG00000014146	RBM28	59	57.395	ENSOMEG00000007801	rbm28	63	55.833	Oryzias_melastigma
ENSCHIG00000014146	RBM28	90	92.500	ENSOGAG00000006011	RBM28	100	92.500	Otolemur_garnettii
ENSCHIG00000014146	RBM28	100	97.751	ENSOARG00000002547	RBM28	100	97.751	Ovis_aries
ENSCHIG00000014146	RBM28	100	84.010	ENSPPAG00000041730	RBM28	100	100.000	Pan_paniscus
ENSCHIG00000014146	RBM28	100	84.218	ENSPPRG00000004420	RBM28	100	100.000	Panthera_pardus
ENSCHIG00000014146	RBM28	100	84.728	ENSPTIG00000008550	RBM28	100	100.000	Panthera_tigris_altaica
ENSCHIG00000014146	RBM28	100	84.142	ENSPTRG00000019659	RBM28	100	100.000	Pan_troglodytes
ENSCHIG00000014146	RBM28	100	83.617	ENSPANG00000022295	RBM28	100	97.500	Papio_anubis
ENSCHIG00000014146	RBM28	99	51.617	ENSPKIG00000023453	rbm28	99	51.189	Paramormyrops_kingsleyae
ENSCHIG00000014146	RBM28	83	58.911	ENSPMGG00000012840	rbm28	97	58.911	Periophthalmus_magnuspinnatus
ENSCHIG00000014146	RBM28	100	78.117	ENSPEMG00000020673	Rbm28	100	78.117	Peromyscus_maniculatus_bairdii
ENSCHIG00000014146	RBM28	100	71.579	ENSPCIG00000012810	RBM28	100	71.711	Phascolarctos_cinereus
ENSCHIG00000014146	RBM28	59	55.876	ENSPFOG00000018209	rbm28	62	54.927	Poecilia_formosa
ENSCHIG00000014146	RBM28	58	54.688	ENSPLAG00000016078	rbm28	60	53.459	Poecilia_latipinna
ENSCHIG00000014146	RBM28	59	55.629	ENSPMEG00000004292	rbm28	62	54.697	Poecilia_mexicana
ENSCHIG00000014146	RBM28	57	54.670	ENSPREG00000014287	rbm28	78	53.205	Poecilia_reticulata
ENSCHIG00000014146	RBM28	100	83.926	ENSPPYG00000017975	RBM28	100	84.321	Pongo_abelii
ENSCHIG00000014146	RBM28	74	74.085	ENSPCAG00000008223	RBM28	82	74.085	Procavia_capensis
ENSCHIG00000014146	RBM28	90	100.000	ENSPCOG00000016797	RBM28	100	100.000	Propithecus_coquereli
ENSCHIG00000014146	RBM28	78	92.627	ENSPVAG00000005443	RBM28	77	91.705	Pteropus_vampyrus
ENSCHIG00000014146	RBM28	100	49.874	ENSPNYG00000014003	rbm28	100	51.605	Pundamilia_nyererei
ENSCHIG00000014146	RBM28	100	76.852	ENSRNOG00000005468	Rbm28	100	77.249	Rattus_norvegicus
ENSCHIG00000014146	RBM28	100	83.377	ENSRBIG00000033990	RBM28	100	100.000	Rhinopithecus_bieti
ENSCHIG00000014146	RBM28	100	83.355	ENSRROG00000040747	RBM28	100	100.000	Rhinopithecus_roxellana
ENSCHIG00000014146	RBM28	91	78.796	ENSSBOG00000012308	RBM28	100	78.272	Saimiri_boliviensis_boliviensis
ENSCHIG00000014146	RBM28	96	68.356	ENSSHAG00000017017	RBM28	99	67.483	Sarcophilus_harrisii
ENSCHIG00000014146	RBM28	59	54.260	ENSSMAG00000003885	rbm28	96	52.866	Scophthalmus_maximus
ENSCHIG00000014146	RBM28	59	55.361	ENSSDUG00000014270	rbm28	94	53.593	Seriola_dumerili
ENSCHIG00000014146	RBM28	59	55.580	ENSSLDG00000020099	rbm28	62	53.799	Seriola_lalandi_dorsalis
ENSCHIG00000014146	RBM28	76	85.570	ENSSARG00000008303	RBM28	80	85.604	Sorex_araneus
ENSCHIG00000014146	RBM28	67	73.529	ENSSPUG00000000838	RBM28	78	73.529	Sphenodon_punctatus
ENSCHIG00000014146	RBM28	100	88.757	ENSSSCG00000031847	RBM28	100	88.889	Sus_scrofa
ENSCHIG00000014146	RBM28	59	53.478	ENSTRUG00000013311	rbm28	62	52.292	Takifugu_rubripes
ENSCHIG00000014146	RBM28	99	51.662	ENSTNIG00000017962	rbm28	99	51.102	Tetraodon_nigroviridis
ENSCHIG00000014146	RBM28	86	83.728	ENSTBEG00000012749	RBM28	86	83.728	Tupaia_belangeri
ENSCHIG00000014146	RBM28	100	86.316	ENSTTRG00000013647	RBM28	100	86.053	Tursiops_truncatus
ENSCHIG00000014146	RBM28	100	78.656	ENSUAMG00000006949	RBM28	100	79.315	Ursus_americanus
ENSCHIG00000014146	RBM28	100	85.979	ENSUMAG00000005997	RBM28	100	85.714	Ursus_maritimus
ENSCHIG00000014146	RBM28	85	79.186	ENSVPAG00000008304	RBM28	85	78.717	Vicugna_pacos
ENSCHIG00000014146	RBM28	100	85.259	ENSVVUG00000007270	RBM28	100	85.392	Vulpes_vulpes
ENSCHIG00000014146	RBM28	99	56.868	ENSXETG00000009271	rbm28	88	68.317	Xenopus_tropicalis
ENSCHIG00000014146	RBM28	59	52.667	ENSXCOG00000020357	rbm28	98	51.357	Xiphophorus_couchianus
ENSCHIG00000014146	RBM28	58	53.761	ENSXMAG00000004415	rbm28	62	53.027	Xiphophorus_maculatus