EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000014201 (Gene tree)
Gene ID: 102168690
Gene Symbol: LSM8
Alias: YJR022W
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 6516 bases
Position: chr4:37446467-37452982
Accession: 102168690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000012446	LSM	PF01423.22	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000020236	LSM8-201	285	XM_005679353	ENSCHIP00000012446	94 (aa)	XP_005679410	UPI000D195370

Gene Model

Click here to download ENSCHIG00000014201's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03018	RNA degradation	KEGG
chx03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000014201's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000014201	LSM8	80	36.000	ENSCHIG00000013194	LSM1	56	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000014201	LSM8	90	100.000	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSCHIG00000014201	LSM8	90	95.294	ENSAPOG00000008649	lsm8	89	95.294	Acanthochromis_polyacanthus
ENSCHIG00000014201	LSM8	90	100.000	ENSAMEG00000001162	LSM8	89	100.000	Ailuropoda_melanoleuca
ENSCHIG00000014201	LSM8	80	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSCHIG00000014201	LSM8	90	95.294	ENSAOCG00000013926	lsm8	89	95.294	Amphiprion_ocellaris
ENSCHIG00000014201	LSM8	90	95.294	ENSAPEG00000023502	lsm8	89	95.294	Amphiprion_percula
ENSCHIG00000014201	LSM8	80	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSCHIG00000014201	LSM8	97	95.604	ENSAPLG00000005115	LSM8	92	95.604	Anas_platyrhynchos
ENSCHIG00000014201	LSM8	90	100.000	ENSANAG00000027771	LSM8	100	97.297	Aotus_nancymaae
ENSCHIG00000014201	LSM8	90	95.294	ENSACLG00000011253	lsm8	89	95.294	Astatotilapia_calliptera
ENSCHIG00000014201	LSM8	90	97.647	ENSAMXG00000042902	lsm8	89	97.647	Astyanax_mexicanus
ENSCHIG00000014201	LSM8	90	100.000	ENSBTAG00000012649	LSM8	89	100.000	Bos_taurus
ENSCHIG00000014201	LSM8	87	58.537	WBGene00003082	lsm-8	84	58.537	Caenorhabditis_elegans
ENSCHIG00000014201	LSM8	90	100.000	ENSCJAG00000046406	LSM8	100	97.297	Callithrix_jacchus
ENSCHIG00000014201	LSM8	89	100.000	ENSCAFG00000016459	LSM8	85	100.000	Canis_familiaris
ENSCHIG00000014201	LSM8	94	84.091	ENSCAFG00020012800	-	69	84.091	Canis_lupus_dingo
ENSCHIG00000014201	LSM8	90	100.000	ENSCAFG00020007643	-	89	100.000	Canis_lupus_dingo
ENSCHIG00000014201	LSM8	90	100.000	ENSTSYG00000032434	LSM8	89	100.000	Carlito_syrichta
ENSCHIG00000014201	LSM8	79	98.649	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
ENSCHIG00000014201	LSM8	90	100.000	ENSCPOG00000035673	LSM8	89	100.000	Cavia_porcellus
ENSCHIG00000014201	LSM8	90	100.000	ENSCCAG00000021329	LSM8	100	97.297	Cebus_capucinus
ENSCHIG00000014201	LSM8	90	100.000	ENSCATG00000045302	LSM8	100	97.297	Cercocebus_atys
ENSCHIG00000014201	LSM8	90	100.000	ENSCLAG00000003726	LSM8	89	100.000	Chinchilla_lanigera
ENSCHIG00000014201	LSM8	90	97.647	ENSCSAG00000019007	-	89	97.647	Chlorocebus_sabaeus
ENSCHIG00000014201	LSM8	90	100.000	ENSCSAG00000010802	-	89	100.000	Chlorocebus_sabaeus
ENSCHIG00000014201	LSM8	98	96.739	ENSCPBG00000008154	LSM8	94	96.739	Chrysemys_picta_bellii
ENSCHIG00000014201	LSM8	89	77.381	ENSCING00000024877	-	88	77.381	Ciona_intestinalis
ENSCHIG00000014201	LSM8	90	100.000	ENSCANG00000040728	LSM8	100	97.297	Colobus_angolensis_palliatus
ENSCHIG00000014201	LSM8	90	100.000	ENSCGRG00001000450	Lsm8	89	100.000	Cricetulus_griseus_chok1gshd
ENSCHIG00000014201	LSM8	90	100.000	ENSCGRG00000005587	Lsm8	100	100.000	Cricetulus_griseus_crigri
ENSCHIG00000014201	LSM8	77	95.833	ENSCSEG00000004164	lsm8	79	95.833	Cynoglossus_semilaevis
ENSCHIG00000014201	LSM8	90	94.118	ENSCVAG00000020547	lsm8	89	94.118	Cyprinodon_variegatus
ENSCHIG00000014201	LSM8	90	95.294	ENSDARG00000091656	lsm8	89	95.294	Danio_rerio
ENSCHIG00000014201	LSM8	90	100.000	ENSDNOG00000034613	LSM8	89	100.000	Dasypus_novemcinctus
ENSCHIG00000014201	LSM8	90	100.000	ENSDORG00000027868	Lsm8	89	100.000	Dipodomys_ordii
ENSCHIG00000014201	LSM8	94	67.045	FBgn0035271	CG2021	93	67.045	Drosophila_melanogaster
ENSCHIG00000014201	LSM8	90	98.824	ENSETEG00000011594	LSM8	89	98.824	Echinops_telfairi
ENSCHIG00000014201	LSM8	79	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSCHIG00000014201	LSM8	90	100.000	ENSEASG00005008932	LSM8	55	100.000	Equus_asinus_asinus
ENSCHIG00000014201	LSM8	100	98.936	ENSECAG00000024025	LSM8	85	98.936	Equus_caballus
ENSCHIG00000014201	LSM8	90	94.118	ENSELUG00000010138	lsm8	89	94.118	Esox_lucius
ENSCHIG00000014201	LSM8	90	100.000	ENSFCAG00000036620	-	89	100.000	Felis_catus
ENSCHIG00000014201	LSM8	82	72.727	ENSFCAG00000044794	-	78	72.727	Felis_catus
ENSCHIG00000014201	LSM8	90	98.824	ENSFALG00000010023	LSM8	89	98.824	Ficedula_albicollis
ENSCHIG00000014201	LSM8	90	100.000	ENSFDAG00000019530	LSM8	89	100.000	Fukomys_damarensis
ENSCHIG00000014201	LSM8	90	95.294	ENSFHEG00000013729	lsm8	89	95.294	Fundulus_heteroclitus
ENSCHIG00000014201	LSM8	90	98.824	ENSGALG00000009110	LSM8	89	98.824	Gallus_gallus
ENSCHIG00000014201	LSM8	90	94.118	ENSGAFG00000001135	lsm8	89	94.118	Gambusia_affinis
ENSCHIG00000014201	LSM8	98	96.739	ENSGAGG00000017366	LSM8	94	96.739	Gopherus_agassizii
ENSCHIG00000014201	LSM8	90	100.000	ENSGGOG00000041883	LSM8	89	100.000	Gorilla_gorilla
ENSCHIG00000014201	LSM8	90	95.294	ENSHBUG00000003646	lsm8	89	95.294	Haplochromis_burtoni
ENSCHIG00000014201	LSM8	61	100.000	ENSHGLG00000001988	-	83	100.000	Heterocephalus_glaber_female
ENSCHIG00000014201	LSM8	94	90.909	ENSHGLG00000019782	-	92	90.909	Heterocephalus_glaber_female
ENSCHIG00000014201	LSM8	89	96.429	ENSHGLG00100003934	-	84	96.429	Heterocephalus_glaber_male
ENSCHIG00000014201	LSM8	90	95.294	ENSHGLG00100012166	-	88	95.294	Heterocephalus_glaber_male
ENSCHIG00000014201	LSM8	90	94.118	ENSHCOG00000005037	lsm8	89	94.118	Hippocampus_comes
ENSCHIG00000014201	LSM8	90	97.647	ENSIPUG00000019811	NAA38	89	97.647	Ictalurus_punctatus
ENSCHIG00000014201	LSM8	90	100.000	ENSSTOG00000009039	LSM8	89	100.000	Ictidomys_tridecemlineatus
ENSCHIG00000014201	LSM8	94	85.227	ENSSTOG00000034801	-	81	85.227	Ictidomys_tridecemlineatus
ENSCHIG00000014201	LSM8	90	100.000	ENSJJAG00000009031	Lsm8	88	100.000	Jaculus_jaculus
ENSCHIG00000014201	LSM8	90	95.294	ENSKMAG00000018983	lsm8	89	95.294	Kryptolebias_marmoratus
ENSCHIG00000014201	LSM8	94	93.182	ENSLACG00000010231	LSM8	92	93.182	Latimeria_chalumnae
ENSCHIG00000014201	LSM8	90	96.471	ENSLOCG00000015580	lsm8	89	96.471	Lepisosteus_oculatus
ENSCHIG00000014201	LSM8	90	100.000	ENSLAFG00000011242	LSM8	88	100.000	Loxodonta_africana
ENSCHIG00000014201	LSM8	90	96.471	ENSMFAG00000013044	-	89	96.471	Macaca_fascicularis
ENSCHIG00000014201	LSM8	90	100.000	ENSMFAG00000035798	LSM8	100	97.297	Macaca_fascicularis
ENSCHIG00000014201	LSM8	90	100.000	ENSMMUG00000046401	LSM8	100	97.297	Macaca_mulatta
ENSCHIG00000014201	LSM8	80	96.000	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
ENSCHIG00000014201	LSM8	90	100.000	ENSMNEG00000036764	-	100	97.297	Macaca_nemestrina
ENSCHIG00000014201	LSM8	90	83.529	ENSMLEG00000039324	-	88	83.529	Mandrillus_leucophaeus
ENSCHIG00000014201	LSM8	90	100.000	ENSMLEG00000035828	-	100	97.297	Mandrillus_leucophaeus
ENSCHIG00000014201	LSM8	80	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSCHIG00000014201	LSM8	90	95.294	ENSMZEG00005019138	lsm8	89	95.294	Maylandia_zebra
ENSCHIG00000014201	LSM8	90	98.824	ENSMGAG00000008808	LSM8	89	98.824	Meleagris_gallopavo
ENSCHIG00000014201	LSM8	90	91.765	ENSMAUG00000015721	-	88	91.765	Mesocricetus_auratus
ENSCHIG00000014201	LSM8	94	78.409	ENSMAUG00000015356	-	91	78.409	Mesocricetus_auratus
ENSCHIG00000014201	LSM8	77	93.056	ENSMAUG00000020287	-	100	90.541	Mesocricetus_auratus
ENSCHIG00000014201	LSM8	90	100.000	ENSMICG00000042730	LSM8	89	100.000	Microcebus_murinus
ENSCHIG00000014201	LSM8	90	100.000	ENSMOCG00000001688	Lsm8	89	100.000	Microtus_ochrogaster
ENSCHIG00000014201	LSM8	80	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSCHIG00000014201	LSM8	78	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSCHIG00000014201	LSM8	90	96.471	ENSMALG00000000405	lsm8	89	96.471	Monopterus_albus
ENSCHIG00000014201	LSM8	90	100.000	MGP_CAROLIEiJ_G0028125	-	89	100.000	Mus_caroli
ENSCHIG00000014201	LSM8	90	100.000	ENSMUSG00000044155	Lsm8	89	100.000	Mus_musculus
ENSCHIG00000014201	LSM8	90	100.000	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
ENSCHIG00000014201	LSM8	90	100.000	MGP_SPRETEiJ_G0029125	-	89	100.000	Mus_spretus
ENSCHIG00000014201	LSM8	90	98.824	ENSMLUG00000027762	-	89	98.824	Myotis_lucifugus
ENSCHIG00000014201	LSM8	90	100.000	ENSMLUG00000006837	-	89	100.000	Myotis_lucifugus
ENSCHIG00000014201	LSM8	90	100.000	ENSNGAG00000016554	Lsm8	89	100.000	Nannospalax_galili
ENSCHIG00000014201	LSM8	90	95.294	ENSNBRG00000014441	lsm8	89	95.294	Neolamprologus_brichardi
ENSCHIG00000014201	LSM8	90	100.000	ENSNLEG00000011768	LSM8	89	100.000	Nomascus_leucogenys
ENSCHIG00000014201	LSM8	94	84.091	ENSMEUG00000007801	LSM8	92	84.091	Notamacropus_eugenii
ENSCHIG00000014201	LSM8	90	100.000	ENSOPRG00000014809	LSM8	100	100.000	Ochotona_princeps
ENSCHIG00000014201	LSM8	90	100.000	ENSODEG00000000418	-	89	100.000	Octodon_degus
ENSCHIG00000014201	LSM8	89	76.744	ENSODEG00000020290	-	100	76.744	Octodon_degus
ENSCHIG00000014201	LSM8	90	100.000	ENSOANG00000014536	LSM8	89	100.000	Ornithorhynchus_anatinus
ENSCHIG00000014201	LSM8	90	100.000	ENSOCUG00000017359	LSM8	88	100.000	Oryctolagus_cuniculus
ENSCHIG00000014201	LSM8	77	97.222	ENSORLG00000017432	lsm8	77	97.222	Oryzias_latipes
ENSCHIG00000014201	LSM8	77	97.222	ENSORLG00020004376	lsm8	77	97.222	Oryzias_latipes_hni
ENSCHIG00000014201	LSM8	90	95.294	ENSORLG00015003757	lsm8	89	95.294	Oryzias_latipes_hsok
ENSCHIG00000014201	LSM8	73	97.101	ENSOMEG00000022509	lsm8	83	93.333	Oryzias_melastigma
ENSCHIG00000014201	LSM8	90	100.000	ENSOGAG00000013377	LSM8	89	100.000	Otolemur_garnettii
ENSCHIG00000014201	LSM8	90	100.000	ENSOARG00000017974	LSM8	89	100.000	Ovis_aries
ENSCHIG00000014201	LSM8	80	100.000	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
ENSCHIG00000014201	LSM8	90	100.000	ENSPPRG00000006444	LSM8	89	100.000	Panthera_pardus
ENSCHIG00000014201	LSM8	90	100.000	ENSPTIG00000004722	LSM8	89	100.000	Panthera_tigris_altaica
ENSCHIG00000014201	LSM8	80	100.000	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
ENSCHIG00000014201	LSM8	90	100.000	ENSPANG00000035470	-	100	97.297	Papio_anubis
ENSCHIG00000014201	LSM8	90	95.294	ENSPANG00000019395	-	89	95.294	Papio_anubis
ENSCHIG00000014201	LSM8	98	92.391	ENSPKIG00000006092	lsm8	93	92.391	Paramormyrops_kingsleyae
ENSCHIG00000014201	LSM8	80	100.000	ENSPSIG00000017054	LSM8	100	100.000	Pelodiscus_sinensis
ENSCHIG00000014201	LSM8	80	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSCHIG00000014201	LSM8	79	97.297	ENSPEMG00000009153	Lsm8	100	97.297	Peromyscus_maniculatus_bairdii
ENSCHIG00000014201	LSM8	87	100.000	ENSPCIG00000021467	LSM8	86	100.000	Phascolarctos_cinereus
ENSCHIG00000014201	LSM8	90	94.118	ENSPFOG00000012340	lsm8	89	94.118	Poecilia_formosa
ENSCHIG00000014201	LSM8	93	94.253	ENSPLAG00000000516	lsm8	91	94.253	Poecilia_latipinna
ENSCHIG00000014201	LSM8	90	94.118	ENSPMEG00000022567	lsm8	89	94.118	Poecilia_mexicana
ENSCHIG00000014201	LSM8	78	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSCHIG00000014201	LSM8	90	100.000	ENSPPYG00000017942	LSM8	89	100.000	Pongo_abelii
ENSCHIG00000014201	LSM8	89	77.381	ENSPCOG00000017982	-	86	77.381	Propithecus_coquereli
ENSCHIG00000014201	LSM8	90	100.000	ENSPCOG00000003309	-	89	100.000	Propithecus_coquereli
ENSCHIG00000014201	LSM8	90	98.824	ENSPVAG00000000990	LSM8	100	98.824	Pteropus_vampyrus
ENSCHIG00000014201	LSM8	90	95.294	ENSPNYG00000011448	lsm8	89	95.294	Pundamilia_nyererei
ENSCHIG00000014201	LSM8	90	97.647	ENSPNAG00000010252	lsm8	89	97.647	Pygocentrus_nattereri
ENSCHIG00000014201	LSM8	90	100.000	ENSRNOG00000058677	Lsm8	89	100.000	Rattus_norvegicus
ENSCHIG00000014201	LSM8	90	100.000	ENSRBIG00000032851	LSM8	100	97.297	Rhinopithecus_bieti
ENSCHIG00000014201	LSM8	90	100.000	ENSRROG00000039618	LSM8	100	97.297	Rhinopithecus_roxellana
ENSCHIG00000014201	LSM8	90	100.000	ENSSBOG00000023223	LSM8	100	97.297	Saimiri_boliviensis_boliviensis
ENSCHIG00000014201	LSM8	90	100.000	ENSSHAG00000018435	-	89	100.000	Sarcophilus_harrisii
ENSCHIG00000014201	LSM8	90	94.118	ENSSFOG00015004412	lsm8	89	94.118	Scleropages_formosus
ENSCHIG00000014201	LSM8	80	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSCHIG00000014201	LSM8	90	95.294	ENSSDUG00000014702	lsm8	89	95.294	Seriola_dumerili
ENSCHIG00000014201	LSM8	80	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSCHIG00000014201	LSM8	77	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
ENSCHIG00000014201	LSM8	90	100.000	ENSSPUG00000017419	LSM8	89	100.000	Sphenodon_punctatus
ENSCHIG00000014201	LSM8	90	95.294	ENSSPAG00000021422	lsm8	89	95.294	Stegastes_partitus
ENSCHIG00000014201	LSM8	90	100.000	ENSSSCG00000021652	LSM8	89	100.000	Sus_scrofa
ENSCHIG00000014201	LSM8	90	97.647	ENSTGUG00000016823	-	89	97.647	Taeniopygia_guttata
ENSCHIG00000014201	LSM8	90	98.824	ENSTGUG00000004730	-	89	98.824	Taeniopygia_guttata
ENSCHIG00000014201	LSM8	90	95.294	ENSTRUG00000025192	lsm8	89	95.294	Takifugu_rubripes
ENSCHIG00000014201	LSM8	90	95.294	ENSTNIG00000002864	lsm8	89	95.294	Tetraodon_nigroviridis
ENSCHIG00000014201	LSM8	90	100.000	ENSTTRG00000001023	LSM8	89	100.000	Tursiops_truncatus
ENSCHIG00000014201	LSM8	100	97.872	ENSUAMG00000006943	-	98	97.872	Ursus_americanus
ENSCHIG00000014201	LSM8	100	97.872	ENSUMAG00000003073	LSM8	100	97.872	Ursus_maritimus
ENSCHIG00000014201	LSM8	90	100.000	ENSVPAG00000001530	LSM8	89	100.000	Vicugna_pacos
ENSCHIG00000014201	LSM8	80	97.333	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
ENSCHIG00000014201	LSM8	99	89.247	ENSXETG00000021829	lsm8	96	89.247	Xenopus_tropicalis
ENSCHIG00000014201	LSM8	90	92.941	ENSXCOG00000012938	lsm8	89	92.941	Xiphophorus_couchianus
ENSCHIG00000014201	LSM8	90	94.118	ENSXMAG00000025919	lsm8	89	94.118	Xiphophorus_maculatus