EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000014313 (Gene tree)
Gene ID: 102169823
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 11235 bases
Position: chr25:37844576-37855810
Accession: 102169823
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000012645	zf-CCCH	PF00642.24	3.8e-20	1	2
ENSCHIP00000012645	zf-CCCH	PF00642.24	3.8e-20	2	2
ENSCHIP00000012654	zf-CCCH	PF00642.24	1.6e-15	1	2
ENSCHIP00000012654	zf-CCCH	PF00642.24	1.6e-15	2	2
ENSCHIP00000012654	zf-CCHC	PF00098.23	3.6e-06	1	1
ENSCHIP00000012645	zf-CCHC	PF00098.23	4.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000020445	CPSF4-202	636	-	ENSCHIP00000012654	211 (aa)	-	UPI000D1902CE
ENSCHIT00000020437	CPSF4-201	810	XM_018040201	ENSCHIP00000012645	269 (aa)	XP_017895690	UPI0000F3069D

Gene Model

Click here to download ENSCHIG00000014313's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03015	mRNA surveillance pathway	KEGG
chx05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000014313's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000014313	CPSF4	100	99.257	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSCHIG00000014313	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSCHIG00000014313	CPSF4	100	99.257	ENSAMEG00000006252	CPSF4	100	99.257	Ailuropoda_melanoleuca
ENSCHIG00000014313	CPSF4	100	79.182	ENSACIG00000009248	cpsf4	100	77.323	Amphilophus_citrinellus
ENSCHIG00000014313	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSCHIG00000014313	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSCHIG00000014313	CPSF4	100	84.191	ENSATEG00000007010	cpsf4	100	84.191	Anabas_testudineus
ENSCHIG00000014313	CPSF4	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSCHIG00000014313	CPSF4	100	99.257	ENSANAG00000021360	CPSF4	100	99.257	Aotus_nancymaae
ENSCHIG00000014313	CPSF4	100	83.333	ENSACLG00000010374	cpsf4	100	83.333	Astatotilapia_calliptera
ENSCHIG00000014313	CPSF4	100	86.256	ENSAMXG00000031647	cpsf4	100	86.347	Astyanax_mexicanus
ENSCHIG00000014313	CPSF4	100	90.335	ENSBTAG00000002090	CPSF4	100	90.335	Bos_taurus
ENSCHIG00000014313	CPSF4	100	99.257	ENSCJAG00000015826	CPSF4	100	99.257	Callithrix_jacchus
ENSCHIG00000014313	CPSF4	100	98.885	ENSCAFG00000015036	CPSF4	100	98.885	Canis_familiaris
ENSCHIG00000014313	CPSF4	100	92.565	ENSCAFG00020014462	CPSF4	100	92.565	Canis_lupus_dingo
ENSCHIG00000014313	CPSF4	100	99.052	ENSTSYG00000005712	-	100	99.052	Carlito_syrichta
ENSCHIG00000014313	CPSF4	85	89.503	ENSTSYG00000008195	-	100	89.503	Carlito_syrichta
ENSCHIG00000014313	CPSF4	100	88.263	ENSTSYG00000014604	-	100	88.263	Carlito_syrichta
ENSCHIG00000014313	CPSF4	81	99.083	ENSCAPG00000013881	CPSF4	87	99.083	Cavia_aperea
ENSCHIG00000014313	CPSF4	100	99.052	ENSCPOG00000001783	CPSF4	100	99.052	Cavia_porcellus
ENSCHIG00000014313	CPSF4	100	99.257	ENSCCAG00000028291	CPSF4	100	99.257	Cebus_capucinus
ENSCHIG00000014313	CPSF4	100	99.257	ENSCATG00000038440	CPSF4	100	99.257	Cercocebus_atys
ENSCHIG00000014313	CPSF4	100	98.885	ENSCLAG00000007050	CPSF4	100	98.885	Chinchilla_lanigera
ENSCHIG00000014313	CPSF4	100	99.257	ENSCSAG00000017795	CPSF4	100	99.257	Chlorocebus_sabaeus
ENSCHIG00000014313	CPSF4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSCHIG00000014313	CPSF4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSCHIG00000014313	CPSF4	97	56.489	ENSCING00000021080	-	97	56.489	Ciona_intestinalis
ENSCHIG00000014313	CPSF4	96	53.357	ENSCSAVG00000011469	-	97	53.546	Ciona_savignyi
ENSCHIG00000014313	CPSF4	100	99.257	ENSCANG00000019384	CPSF4	100	99.257	Colobus_angolensis_palliatus
ENSCHIG00000014313	CPSF4	100	99.052	ENSCGRG00001024184	Cpsf4	100	99.052	Cricetulus_griseus_chok1gshd
ENSCHIG00000014313	CPSF4	100	99.257	ENSCGRG00000013892	Cpsf4	100	99.257	Cricetulus_griseus_crigri
ENSCHIG00000014313	CPSF4	100	84.834	ENSCSEG00000019055	cpsf4	100	84.834	Cynoglossus_semilaevis
ENSCHIG00000014313	CPSF4	100	82.963	ENSCVAG00000016528	cpsf4	100	82.963	Cyprinodon_variegatus
ENSCHIG00000014313	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSCHIG00000014313	CPSF4	100	99.628	ENSDNOG00000006344	CPSF4	100	99.628	Dasypus_novemcinctus
ENSCHIG00000014313	CPSF4	81	98.618	ENSDORG00000000742	Cpsf4	100	98.618	Dipodomys_ordii
ENSCHIG00000014313	CPSF4	100	54.452	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSCHIG00000014313	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSCHIG00000014313	CPSF4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSCHIG00000014313	CPSF4	100	89.963	ENSEASG00005002487	CPSF4	100	89.963	Equus_asinus_asinus
ENSCHIG00000014313	CPSF4	100	99.257	ENSECAG00000007525	CPSF4	100	99.257	Equus_caballus
ENSCHIG00000014313	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSCHIG00000014313	CPSF4	100	83.212	ENSELUG00000011481	cpsf4	100	81.022	Esox_lucius
ENSCHIG00000014313	CPSF4	100	99.257	ENSFCAG00000015070	CPSF4	100	99.257	Felis_catus
ENSCHIG00000014313	CPSF4	100	85.874	ENSFALG00000013799	CPSF4	100	84.387	Ficedula_albicollis
ENSCHIG00000014313	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSCHIG00000014313	CPSF4	90	98.354	ENSFDAG00000014092	CPSF4	100	98.354	Fukomys_damarensis
ENSCHIG00000014313	CPSF4	100	82.963	ENSFHEG00000010880	cpsf4	100	82.963	Fundulus_heteroclitus
ENSCHIG00000014313	CPSF4	100	77.122	ENSGMOG00000002330	cpsf4	100	75.646	Gadus_morhua
ENSCHIG00000014313	CPSF4	100	85.874	ENSGALG00000004714	CPSF4	100	84.758	Gallus_gallus
ENSCHIG00000014313	CPSF4	99	37.895	ENSGALG00000004441	-	98	31.304	Gallus_gallus
ENSCHIG00000014313	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSCHIG00000014313	CPSF4	100	77.122	ENSGACG00000007792	cpsf4	100	76.015	Gasterosteus_aculeatus
ENSCHIG00000014313	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSCHIG00000014313	CPSF4	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSCHIG00000014313	CPSF4	100	99.257	ENSGGOG00000015131	CPSF4	100	99.257	Gorilla_gorilla
ENSCHIG00000014313	CPSF4	100	83.333	ENSHBUG00000013699	cpsf4	100	83.333	Haplochromis_burtoni
ENSCHIG00000014313	CPSF4	100	98.578	ENSHGLG00000017150	CPSF4	100	98.578	Heterocephalus_glaber_female
ENSCHIG00000014313	CPSF4	100	71.090	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSCHIG00000014313	CPSF4	87	95.339	ENSHGLG00100009215	-	100	96.023	Heterocephalus_glaber_male
ENSCHIG00000014313	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	78.148	Hippocampus_comes
ENSCHIG00000014313	CPSF4	100	84.502	ENSIPUG00000017147	cpsf4	100	85.662	Ictalurus_punctatus
ENSCHIG00000014313	CPSF4	100	99.257	ENSSTOG00000001688	CPSF4	100	99.257	Ictidomys_tridecemlineatus
ENSCHIG00000014313	CPSF4	100	98.885	ENSJJAG00000019426	Cpsf4	100	98.885	Jaculus_jaculus
ENSCHIG00000014313	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSCHIG00000014313	CPSF4	100	89.259	ENSLACG00000010938	CPSF4	100	89.259	Latimeria_chalumnae
ENSCHIG00000014313	CPSF4	100	61.111	ENSLACG00000018470	-	100	61.111	Latimeria_chalumnae
ENSCHIG00000014313	CPSF4	100	88.848	ENSLOCG00000004814	cpsf4	100	88.848	Lepisosteus_oculatus
ENSCHIG00000014313	CPSF4	100	98.885	ENSLAFG00000000159	CPSF4	100	98.885	Loxodonta_africana
ENSCHIG00000014313	CPSF4	100	99.257	ENSMFAG00000001462	CPSF4	100	99.257	Macaca_fascicularis
ENSCHIG00000014313	CPSF4	100	99.257	ENSMMUG00000019191	CPSF4	100	99.257	Macaca_mulatta
ENSCHIG00000014313	CPSF4	100	99.257	ENSMNEG00000032306	CPSF4	100	99.257	Macaca_nemestrina
ENSCHIG00000014313	CPSF4	100	99.257	ENSMLEG00000034721	CPSF4	100	99.257	Mandrillus_leucophaeus
ENSCHIG00000014313	CPSF4	100	83.704	ENSMAMG00000006244	cpsf4	100	83.150	Mastacembelus_armatus
ENSCHIG00000014313	CPSF4	100	83.333	ENSMZEG00005007515	cpsf4	100	83.333	Maylandia_zebra
ENSCHIG00000014313	CPSF4	87	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSCHIG00000014313	CPSF4	100	99.257	ENSMAUG00000021253	Cpsf4	100	99.257	Mesocricetus_auratus
ENSCHIG00000014313	CPSF4	100	98.885	ENSMICG00000017429	CPSF4	100	98.885	Microcebus_murinus
ENSCHIG00000014313	CPSF4	100	99.257	ENSMOCG00000014901	Cpsf4	100	99.257	Microtus_ochrogaster
ENSCHIG00000014313	CPSF4	100	85.308	ENSMMOG00000001813	cpsf4	100	85.308	Mola_mola
ENSCHIG00000014313	CPSF4	100	97.026	ENSMODG00000001367	CPSF4	100	97.026	Monodelphis_domestica
ENSCHIG00000014313	CPSF4	100	82.593	ENSMALG00000012611	cpsf4	100	82.593	Monopterus_albus
ENSCHIG00000014313	CPSF4	100	99.257	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.257	Mus_caroli
ENSCHIG00000014313	CPSF4	100	99.257	ENSMUSG00000029625	Cpsf4	100	99.257	Mus_musculus
ENSCHIG00000014313	CPSF4	100	99.257	MGP_PahariEiJ_G0024581	Cpsf4	100	99.257	Mus_pahari
ENSCHIG00000014313	CPSF4	100	98.885	MGP_SPRETEiJ_G0029013	Cpsf4	100	98.885	Mus_spretus
ENSCHIG00000014313	CPSF4	100	99.257	ENSMPUG00000016508	CPSF4	100	99.257	Mustela_putorius_furo
ENSCHIG00000014313	CPSF4	87	87.234	ENSMLUG00000010980	CPSF4	100	87.234	Myotis_lucifugus
ENSCHIG00000014313	CPSF4	100	98.885	ENSNGAG00000001567	Cpsf4	100	98.885	Nannospalax_galili
ENSCHIG00000014313	CPSF4	91	82.927	ENSNBRG00000003943	cpsf4	98	82.927	Neolamprologus_brichardi
ENSCHIG00000014313	CPSF4	100	99.052	ENSNLEG00000011074	CPSF4	100	99.052	Nomascus_leucogenys
ENSCHIG00000014313	CPSF4	100	97.026	ENSMEUG00000006955	CPSF4	100	97.026	Notamacropus_eugenii
ENSCHIG00000014313	CPSF4	100	98.513	ENSOPRG00000013663	CPSF4	100	98.513	Ochotona_princeps
ENSCHIG00000014313	CPSF4	100	74.725	ENSODEG00000009779	-	100	74.725	Octodon_degus
ENSCHIG00000014313	CPSF4	98	77.830	ENSODEG00000018283	-	89	77.830	Octodon_degus
ENSCHIG00000014313	CPSF4	100	99.257	ENSODEG00000011181	-	100	99.257	Octodon_degus
ENSCHIG00000014313	CPSF4	100	83.333	ENSONIG00000008495	cpsf4	100	83.333	Oreochromis_niloticus
ENSCHIG00000014313	CPSF4	100	54.676	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSCHIG00000014313	CPSF4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSCHIG00000014313	CPSF4	100	98.513	ENSOCUG00000002437	CPSF4	70	98.513	Oryctolagus_cuniculus
ENSCHIG00000014313	CPSF4	100	82.900	ENSORLG00000022798	cpsf4	100	82.900	Oryzias_latipes
ENSCHIG00000014313	CPSF4	100	82.900	ENSORLG00020008548	cpsf4	100	82.900	Oryzias_latipes_hni
ENSCHIG00000014313	CPSF4	100	82.528	ENSORLG00015019575	cpsf4	100	82.528	Oryzias_latipes_hsok
ENSCHIG00000014313	CPSF4	100	83.412	ENSOMEG00000005176	cpsf4	100	83.412	Oryzias_melastigma
ENSCHIG00000014313	CPSF4	100	98.885	ENSOGAG00000010884	CPSF4	100	98.885	Otolemur_garnettii
ENSCHIG00000014313	CPSF4	100	88.645	ENSOARG00000018668	CPSF4	100	88.278	Ovis_aries
ENSCHIG00000014313	CPSF4	100	98.885	ENSPPAG00000043355	CPSF4	100	98.885	Pan_paniscus
ENSCHIG00000014313	CPSF4	100	99.257	ENSPPRG00000003134	CPSF4	100	99.257	Panthera_pardus
ENSCHIG00000014313	CPSF4	90	98.760	ENSPTIG00000005604	CPSF4	90	98.760	Panthera_tigris_altaica
ENSCHIG00000014313	CPSF4	100	98.885	ENSPTRG00000019453	CPSF4	100	98.885	Pan_troglodytes
ENSCHIG00000014313	CPSF4	100	99.257	ENSPANG00000023123	CPSF4	100	99.257	Papio_anubis
ENSCHIG00000014313	CPSF4	100	84.307	ENSPKIG00000014278	cpsf4	100	84.307	Paramormyrops_kingsleyae
ENSCHIG00000014313	CPSF4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSCHIG00000014313	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSCHIG00000014313	CPSF4	100	72.862	ENSPMGG00000017735	cpsf4	100	71.747	Periophthalmus_magnuspinnatus
ENSCHIG00000014313	CPSF4	100	99.257	ENSPEMG00000004508	Cpsf4	100	99.257	Peromyscus_maniculatus_bairdii
ENSCHIG00000014313	CPSF4	100	97.026	ENSPCIG00000024776	CPSF4	100	97.026	Phascolarctos_cinereus
ENSCHIG00000014313	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSCHIG00000014313	CPSF4	100	74.721	ENSPLAG00000009599	cpsf4	100	74.721	Poecilia_latipinna
ENSCHIG00000014313	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSCHIG00000014313	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	78.519	Poecilia_reticulata
ENSCHIG00000014313	CPSF4	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSCHIG00000014313	CPSF4	100	98.141	ENSPCAG00000001892	CPSF4	100	98.141	Procavia_capensis
ENSCHIG00000014313	CPSF4	100	99.257	ENSPCOG00000012771	CPSF4	100	99.257	Propithecus_coquereli
ENSCHIG00000014313	CPSF4	100	92.565	ENSPVAG00000007531	CPSF4	100	92.565	Pteropus_vampyrus
ENSCHIG00000014313	CPSF4	100	83.333	ENSPNYG00000018559	cpsf4	100	83.333	Pundamilia_nyererei
ENSCHIG00000014313	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSCHIG00000014313	CPSF4	100	99.052	ENSRNOG00000000985	Cpsf4	100	99.052	Rattus_norvegicus
ENSCHIG00000014313	CPSF4	87	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSCHIG00000014313	CPSF4	100	99.052	ENSRROG00000040431	CPSF4	100	99.052	Rhinopithecus_roxellana
ENSCHIG00000014313	CPSF4	100	99.257	ENSSBOG00000020493	CPSF4	100	99.257	Saimiri_boliviensis_boliviensis
ENSCHIG00000014313	CPSF4	100	97.026	ENSSHAG00000011533	CPSF4	100	97.026	Sarcophilus_harrisii
ENSCHIG00000014313	CPSF4	100	85.507	ENSSFOG00015007883	cpsf4	100	86.232	Scleropages_formosus
ENSCHIG00000014313	CPSF4	100	79.182	ENSSMAG00000006374	cpsf4	100	77.323	Scophthalmus_maximus
ENSCHIG00000014313	CPSF4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSCHIG00000014313	CPSF4	100	84.074	ENSSLDG00000019078	cpsf4	100	84.074	Seriola_lalandi_dorsalis
ENSCHIG00000014313	CPSF4	87	98.718	ENSSARG00000012416	CPSF4	100	98.718	Sorex_araneus
ENSCHIG00000014313	CPSF4	96	58.915	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSCHIG00000014313	CPSF4	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSCHIG00000014313	CPSF4	100	79.554	ENSSPAG00000006174	cpsf4	100	76.580	Stegastes_partitus
ENSCHIG00000014313	CPSF4	100	89.591	ENSSSCG00000026896	CPSF4	100	89.591	Sus_scrofa
ENSCHIG00000014313	CPSF4	100	84.871	ENSTGUG00000007552	CPSF4	100	83.395	Taeniopygia_guttata
ENSCHIG00000014313	CPSF4	100	80.741	ENSTRUG00000024220	cpsf4	100	80.741	Takifugu_rubripes
ENSCHIG00000014313	CPSF4	100	79.630	ENSTNIG00000006265	cpsf4	100	81.111	Tetraodon_nigroviridis
ENSCHIG00000014313	CPSF4	87	89.316	ENSTBEG00000011406	CPSF4	100	89.316	Tupaia_belangeri
ENSCHIG00000014313	CPSF4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSCHIG00000014313	CPSF4	92	88.664	ENSUAMG00000008051	CPSF4	85	88.664	Ursus_americanus
ENSCHIG00000014313	CPSF4	100	89.591	ENSUMAG00000009474	CPSF4	100	89.591	Ursus_maritimus
ENSCHIG00000014313	CPSF4	100	89.591	ENSVVUG00000008824	CPSF4	100	89.591	Vulpes_vulpes
ENSCHIG00000014313	CPSF4	99	60.526	ENSXETG00000004641	cpsf4l	99	60.526	Xenopus_tropicalis
ENSCHIG00000014313	CPSF4	100	87.814	ENSXETG00000009892	cpsf4	100	87.814	Xenopus_tropicalis
ENSCHIG00000014313	CPSF4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSCHIG00000014313	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus