EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000014656 (Gene tree)
Gene ID: 102175909
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 27547 bases
Position: chr2:7653684-7681230
Accession: 102175909
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000013179	PWI	PF01480.17	7e-30	1	1
ENSCHIP00000013182	PWI	PF01480.17	7.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000020971	SRRM1-201	2784	-	ENSCHIP00000013179	927 (aa)	-	UPI000D18D14D
ENSCHIT00000020974	SRRM1-202	2742	XM_013974264	ENSCHIP00000013182	913 (aa)	XP_013829718	UPI000D191699

Gene Model

Click here to download ENSCHIG00000014656's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000014656's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000014656	SRRM1	100	96.507	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSCHIG00000014656	SRRM1	100	95.874	ENSAMEG00000010075	SRRM1	100	95.874	Ailuropoda_melanoleuca
ENSCHIG00000014656	SRRM1	100	96.070	ENSANAG00000035606	SRRM1	100	96.070	Aotus_nancymaae
ENSCHIG00000014656	SRRM1	100	98.138	ENSBTAG00000013772	SRRM1	100	98.138	Bos_taurus
ENSCHIG00000014656	SRRM1	91	95.078	ENSCJAG00000020822	SRRM1	100	95.078	Callithrix_jacchus
ENSCHIG00000014656	SRRM1	100	96.616	ENSCAFG00020020948	SRRM1	100	96.616	Canis_lupus_dingo
ENSCHIG00000014656	SRRM1	100	96.288	ENSTSYG00000006782	SRRM1	100	96.288	Carlito_syrichta
ENSCHIG00000014656	SRRM1	99	93.377	ENSCAPG00000011473	SRRM1	100	93.377	Cavia_aperea
ENSCHIG00000014656	SRRM1	100	94.414	ENSCPOG00000015594	SRRM1	100	94.414	Cavia_porcellus
ENSCHIG00000014656	SRRM1	100	96.070	ENSCCAG00000029474	SRRM1	100	96.070	Cebus_capucinus
ENSCHIG00000014656	SRRM1	100	95.290	ENSCLAG00000014592	SRRM1	100	95.290	Chinchilla_lanigera
ENSCHIG00000014656	SRRM1	73	96.389	ENSCHOG00000000027	SRRM1	73	96.389	Choloepus_hoffmanni
ENSCHIG00000014656	SRRM1	100	95.761	ENSEASG00005004270	SRRM1	100	95.761	Equus_asinus_asinus
ENSCHIG00000014656	SRRM1	100	96.175	ENSECAG00000026981	SRRM1	100	96.175	Equus_caballus
ENSCHIG00000014656	SRRM1	100	96.725	ENSFCAG00000000678	-	100	96.725	Felis_catus
ENSCHIG00000014656	SRRM1	100	95.619	ENSFDAG00000009903	SRRM1	100	95.619	Fukomys_damarensis
ENSCHIG00000014656	SRRM1	100	96.397	ENSGGOG00000005209	SRRM1	100	96.397	Gorilla_gorilla
ENSCHIG00000014656	SRRM1	100	95.619	ENSHGLG00000017105	SRRM1	100	95.619	Heterocephalus_glaber_female
ENSCHIG00000014656	SRRM1	99	95.160	ENSHGLG00100016772	SRRM1	99	95.160	Heterocephalus_glaber_male
ENSCHIG00000014656	SRRM1	100	96.179	ENSSTOG00000014640	SRRM1	100	96.179	Ictidomys_tridecemlineatus
ENSCHIG00000014656	SRRM1	100	93.750	ENSLAFG00000013830	SRRM1	100	93.750	Loxodonta_africana
ENSCHIG00000014656	SRRM1	61	99.595	ENSMLEG00000038030	-	92	97.405	Mandrillus_leucophaeus
ENSCHIG00000014656	SRRM1	100	96.288	ENSMICG00000006553	SRRM1	100	96.288	Microcebus_murinus
ENSCHIG00000014656	SRRM1	55	97.619	MGP_CAROLIEiJ_G0026636	Srrm1	100	85.965	Mus_caroli
ENSCHIG00000014656	SRRM1	55	97.619	ENSMUSG00000028809	Srrm1	100	85.965	Mus_musculus
ENSCHIG00000014656	SRRM1	50	97.590	MGP_PahariEiJ_G0028969	Srrm1	100	85.965	Mus_pahari
ENSCHIG00000014656	SRRM1	55	97.619	MGP_SPRETEiJ_G0027616	Srrm1	100	85.965	Mus_spretus
ENSCHIG00000014656	SRRM1	100	96.507	ENSNLEG00000008966	SRRM1	100	96.507	Nomascus_leucogenys
ENSCHIG00000014656	SRRM1	52	89.180	ENSMEUG00000014704	SRRM1	53	84.918	Notamacropus_eugenii
ENSCHIG00000014656	SRRM1	92	98.113	ENSOARG00000006453	SRRM1	99	98.113	Ovis_aries
ENSCHIG00000014656	SRRM1	100	96.397	ENSPPAG00000043918	SRRM1	100	96.397	Pan_paniscus
ENSCHIG00000014656	SRRM1	100	96.725	ENSPPRG00000002509	SRRM1	100	96.725	Panthera_pardus
ENSCHIG00000014656	SRRM1	100	96.507	ENSPTRG00000000349	SRRM1	100	96.507	Pan_troglodytes
ENSCHIG00000014656	SRRM1	100	95.548	ENSPPYG00000001716	SRRM1	100	95.548	Pongo_abelii
ENSCHIG00000014656	SRRM1	100	93.697	ENSPCOG00000021311	SRRM1	100	93.697	Propithecus_coquereli
ENSCHIG00000014656	SRRM1	100	95.548	ENSPVAG00000005836	SRRM1	100	95.548	Pteropus_vampyrus
ENSCHIG00000014656	SRRM1	100	94.137	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSCHIG00000014656	SRRM1	60	94.754	ENSSARG00000013718	SRRM1	62	94.754	Sorex_araneus
ENSCHIG00000014656	SRRM1	99	96.389	ENSSSCG00000032947	SRRM1	100	96.399	Sus_scrofa
ENSCHIG00000014656	SRRM1	100	93.891	ENSTBEG00000000100	SRRM1	100	93.891	Tupaia_belangeri
ENSCHIG00000014656	SRRM1	99	95.509	ENSTTRG00000009365	SRRM1	100	95.509	Tursiops_truncatus
ENSCHIG00000014656	SRRM1	88	96.786	ENSUMAG00000013121	SRRM1	95	96.786	Ursus_maritimus
ENSCHIG00000014656	SRRM1	96	92.325	ENSVPAG00000007698	SRRM1	100	92.325	Vicugna_pacos
ENSCHIG00000014656	SRRM1	99	93.605	ENSVVUG00000026966	SRRM1	97	93.605	Vulpes_vulpes