EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000015559 (Gene tree)
Gene ID: 102176643
Gene Symbol: -
Alias: -
Full Name: survival motor neuron protein
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 23949 bases
Position: chr20:10119273-10143221
Accession: 102176643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000014554	TUDOR	PF00567.24	7.2e-05	1	1
ENSCHIP00000014554	SMN	PF06003.12	1.4e-99	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000022352	-	891	XM_018065742	ENSCHIP00000014554	295 (aa)	XP_017921231	UPI00084713C7

Gene Model

Click here to download ENSCHIG00000015559's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000015559's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000015559	-	95	84.752	ENSG00000205571	SMN2	95	85.130	Homo_sapiens
ENSCHIG00000015559	-	95	84.752	ENSG00000172062	SMN1	95	85.130	Homo_sapiens
ENSCHIG00000015559	-	91	51.087	ENSAPOG00000011324	smn1	94	52.727	Acanthochromis_polyacanthus
ENSCHIG00000015559	-	96	88.028	ENSAMEG00000003316	-	93	88.028	Ailuropoda_melanoleuca
ENSCHIG00000015559	-	87	48.315	ENSACIG00000019772	-	97	49.042	Amphilophus_citrinellus
ENSCHIG00000015559	-	91	50.725	ENSAOCG00000024444	smn1	94	52.593	Amphiprion_ocellaris
ENSCHIG00000015559	-	91	52.899	ENSAPEG00000016504	smn1	94	52.963	Amphiprion_percula
ENSCHIG00000015559	-	89	53.571	ENSATEG00000002182	smn1	80	53.532	Anabas_testudineus
ENSCHIG00000015559	-	67	60.302	ENSAPLG00000010912	-	96	60.302	Anas_platyrhynchos
ENSCHIG00000015559	-	93	58.571	ENSACAG00000010017	-	95	59.075	Anolis_carolinensis
ENSCHIG00000015559	-	99	81.081	ENSANAG00000032133	-	95	82.918	Aotus_nancymaae
ENSCHIG00000015559	-	91	50.000	ENSACLG00000007308	smn1	90	54.545	Astatotilapia_calliptera
ENSCHIG00000015559	-	98	96.875	ENSBTAG00000005743	SMN2	99	96.875	Bos_taurus
ENSCHIG00000015559	-	95	84.342	ENSCJAG00000016290	-	95	84.043	Callithrix_jacchus
ENSCHIG00000015559	-	96	86.972	ENSCAFG00000007812	SMN	97	86.972	Canis_familiaris
ENSCHIG00000015559	-	95	86.926	ENSCAFG00020019229	-	90	86.926	Canis_lupus_dingo
ENSCHIG00000015559	-	99	83.390	ENSTSYG00000012058	-	96	85.714	Carlito_syrichta
ENSCHIG00000015559	-	75	68.996	ENSCAPG00000011021	-	100	70.435	Cavia_aperea
ENSCHIG00000015559	-	97	78.305	ENSCPOG00000012328	-	97	80.345	Cavia_porcellus
ENSCHIG00000015559	-	99	77.365	ENSCPOG00000036973	-	96	80.702	Cavia_porcellus
ENSCHIG00000015559	-	95	81.915	ENSCCAG00000018127	-	95	82.624	Cebus_capucinus
ENSCHIG00000015559	-	95	84.752	ENSCATG00000037002	-	95	85.130	Cercocebus_atys
ENSCHIG00000015559	-	100	77.815	ENSCLAG00000000284	-	96	79.443	Chinchilla_lanigera
ENSCHIG00000015559	-	95	82.624	ENSCSAG00000015688	-	95	84.752	Chlorocebus_sabaeus
ENSCHIG00000015559	-	85	74.603	ENSCHOG00000007346	-	100	71.648	Choloepus_hoffmanni
ENSCHIG00000015559	-	98	59.727	ENSCPBG00000010968	-	96	62.500	Chrysemys_picta_bellii
ENSCHIG00000015559	-	95	79.433	ENSCANG00000033324	-	91	81.550	Colobus_angolensis_palliatus
ENSCHIG00000015559	-	95	83.688	ENSCANG00000038242	-	95	85.019	Colobus_angolensis_palliatus
ENSCHIG00000015559	-	100	79.125	ENSCGRG00001017959	-	97	81.206	Cricetulus_griseus_chok1gshd
ENSCHIG00000015559	-	100	60.473	ENSCGRG00001016998	-	96	62.278	Cricetulus_griseus_chok1gshd
ENSCHIG00000015559	-	100	79.125	ENSCGRG00000007698	Smn1	97	81.206	Cricetulus_griseus_crigri
ENSCHIG00000015559	-	92	47.163	ENSCSEG00000015227	smn1	97	51.064	Cynoglossus_semilaevis
ENSCHIG00000015559	-	92	50.352	ENSCVAG00000007498	smn1	95	50.362	Cyprinodon_variegatus
ENSCHIG00000015559	-	93	45.485	ENSDARG00000018494	smn1	96	50.181	Danio_rerio
ENSCHIG00000015559	-	76	69.469	ENSDNOG00000045949	-	86	69.756	Dasypus_novemcinctus
ENSCHIG00000015559	-	82	83.197	ENSDNOG00000007283	-	100	83.197	Dasypus_novemcinctus
ENSCHIG00000015559	-	95	74.823	ENSDORG00000007082	Smn1	95	74.823	Dipodomys_ordii
ENSCHIG00000015559	-	71	67.453	ENSETEG00000001406	-	96	70.352	Echinops_telfairi
ENSCHIG00000015559	-	91	38.732	ENSEBUG00000011902	smn1	95	36.678	Eptatretus_burgeri
ENSCHIG00000015559	-	86	80.784	ENSEASG00005018000	-	89	82.353	Equus_asinus_asinus
ENSCHIG00000015559	-	95	85.159	ENSECAG00000015215	-	97	86.572	Equus_caballus
ENSCHIG00000015559	-	85	79.447	ENSEEUG00000015777	-	100	79.842	Erinaceus_europaeus
ENSCHIG00000015559	-	91	53.791	ENSELUG00000018067	smn1	94	51.601	Esox_lucius
ENSCHIG00000015559	-	100	84.512	ENSFCAG00000028292	SMN	97	86.268	Felis_catus
ENSCHIG00000015559	-	90	61.029	ENSFALG00000012320	-	94	61.029	Ficedula_albicollis
ENSCHIG00000015559	-	99	77.333	ENSFDAG00000017683	-	96	78.547	Fukomys_damarensis
ENSCHIG00000015559	-	60	52.247	ENSFHEG00000018508	smn1	96	51.460	Fundulus_heteroclitus
ENSCHIG00000015559	-	95	50.357	ENSGMOG00000017279	smn1	92	47.601	Gadus_morhua
ENSCHIG00000015559	-	91	60.662	ENSGALG00000002430	SMN	95	60.294	Gallus_gallus
ENSCHIG00000015559	-	91	51.971	ENSGAFG00000009501	smn1	94	51.273	Gambusia_affinis
ENSCHIG00000015559	-	91	47.970	ENSGACG00000010584	smn1	91	51.838	Gasterosteus_aculeatus
ENSCHIG00000015559	-	91	37.209	ENSGAGG00000013639	-	91	37.209	Gopherus_agassizii
ENSCHIG00000015559	-	97	58.763	ENSGAGG00000011374	-	94	61.314	Gopherus_agassizii
ENSCHIG00000015559	-	62	83.696	ENSGGOG00000026704	-	94	82.673	Gorilla_gorilla
ENSCHIG00000015559	-	94	70.609	ENSGGOG00000003872	-	96	74.721	Gorilla_gorilla
ENSCHIG00000015559	-	91	51.111	ENSHBUG00000013987	smn1	94	54.839	Haplochromis_burtoni
ENSCHIG00000015559	-	99	77.333	ENSHGLG00000001018	-	96	78.201	Heterocephalus_glaber_female
ENSCHIG00000015559	-	99	75.593	ENSHGLG00000001905	-	98	77.305	Heterocephalus_glaber_female
ENSCHIG00000015559	-	99	77.333	ENSHGLG00100011252	-	96	78.201	Heterocephalus_glaber_male
ENSCHIG00000015559	-	95	75.265	ENSHGLG00100018676	-	97	77.037	Heterocephalus_glaber_male
ENSCHIG00000015559	-	88	49.071	ENSHCOG00000017136	smn1	87	47.037	Hippocampus_comes
ENSCHIG00000015559	-	93	49.097	ENSIPUG00000012580	smn1	86	51.079	Ictalurus_punctatus
ENSCHIG00000015559	-	90	85.768	ENSSTOG00000012288	-	96	85.502	Ictidomys_tridecemlineatus
ENSCHIG00000015559	-	58	64.162	ENSJJAG00000014853	-	100	64.737	Jaculus_jaculus
ENSCHIG00000015559	-	91	53.214	ENSKMAG00000007239	smn1	96	51.923	Kryptolebias_marmoratus
ENSCHIG00000015559	-	91	53.214	ENSLBEG00000022550	smn1	94	54.212	Labrus_bergylta
ENSCHIG00000015559	-	91	35.959	ENSLACG00000009808	-	90	37.201	Latimeria_chalumnae
ENSCHIG00000015559	-	90	31.724	ENSLOCG00000000801	-	85	30.496	Lepisosteus_oculatus
ENSCHIG00000015559	-	91	50.185	ENSLOCG00000011339	smn1	94	51.418	Lepisosteus_oculatus
ENSCHIG00000015559	-	100	81.063	ENSLAFG00000003425	-	93	82.292	Loxodonta_africana
ENSCHIG00000015559	-	95	85.106	ENSMFAG00000031523	SMN1	96	85.075	Macaca_fascicularis
ENSCHIG00000015559	-	94	81.071	ENSMFAG00000008812	-	95	81.071	Macaca_fascicularis
ENSCHIG00000015559	-	94	80.357	ENSMMUG00000030594	-	95	80.357	Macaca_mulatta
ENSCHIG00000015559	-	95	85.106	ENSMMUG00000020214	SMN1	95	85.502	Macaca_mulatta
ENSCHIG00000015559	-	77	71.053	ENSMNEG00000036423	-	86	72.072	Macaca_nemestrina
ENSCHIG00000015559	-	95	84.752	ENSMNEG00000035094	-	95	85.502	Macaca_nemestrina
ENSCHIG00000015559	-	94	85.612	ENSMLEG00000041902	-	94	86.038	Mandrillus_leucophaeus
ENSCHIG00000015559	-	91	50.365	ENSMAMG00000011034	smn1	94	52.381	Mastacembelus_armatus
ENSCHIG00000015559	-	91	52.045	ENSMZEG00005013634	smn1	94	52.593	Maylandia_zebra
ENSCHIG00000015559	-	67	57.868	ENSMGAG00000008889	-	94	57.360	Meleagris_gallopavo
ENSCHIG00000015559	-	100	77.441	ENSMAUG00000010262	Smn1	97	80.496	Mesocricetus_auratus
ENSCHIG00000015559	-	77	83.843	ENSMICG00000034708	-	93	82.895	Microcebus_murinus
ENSCHIG00000015559	-	100	75.338	ENSMOCG00000017833	Smn1	97	78.292	Microtus_ochrogaster
ENSCHIG00000015559	-	92	45.714	ENSMMOG00000005504	smn1	96	50.903	Mola_mola
ENSCHIG00000015559	-	97	68.403	ENSMODG00000001436	-	95	68.551	Monodelphis_domestica
ENSCHIG00000015559	-	91	51.449	ENSMALG00000008025	smn1	94	52.708	Monopterus_albus
ENSCHIG00000015559	-	100	78.114	MGP_CAROLIEiJ_G0018836	Smn1	97	80.142	Mus_caroli
ENSCHIG00000015559	-	100	77.778	ENSMUSG00000021645	Smn1	97	79.787	Mus_musculus
ENSCHIG00000015559	-	100	76.094	MGP_PahariEiJ_G0015911	Smn1	97	78.014	Mus_pahari
ENSCHIG00000015559	-	100	77.778	MGP_SPRETEiJ_G0019718	Smn1	97	79.787	Mus_spretus
ENSCHIG00000015559	-	95	87.279	ENSMPUG00000014470	-	95	88.519	Mustela_putorius_furo
ENSCHIG00000015559	-	95	87.805	ENSMLUG00000010603	-	92	87.805	Myotis_lucifugus
ENSCHIG00000015559	-	97	79.094	ENSNGAG00000019833	Smn1	97	81.915	Nannospalax_galili
ENSCHIG00000015559	-	91	52.045	ENSNBRG00000023000	smn1	94	53.137	Neolamprologus_brichardi
ENSCHIG00000015559	-	99	83.618	ENSNLEG00000004454	-	95	85.130	Nomascus_leucogenys
ENSCHIG00000015559	-	77	63.755	ENSMEUG00000011393	-	99	64.783	Notamacropus_eugenii
ENSCHIG00000015559	-	85	78.346	ENSOPRG00000002015	-	100	79.528	Ochotona_princeps
ENSCHIG00000015559	-	93	80.505	ENSODEG00000015976	-	94	81.413	Octodon_degus
ENSCHIG00000015559	-	53	60.510	ENSONIG00000011799	smn1	95	52.747	Oreochromis_niloticus
ENSCHIG00000015559	-	93	63.309	ENSOANG00000001626	-	96	64.413	Ornithorhynchus_anatinus
ENSCHIG00000015559	-	100	80.808	ENSOCUG00000017097	-	95	83.688	Oryctolagus_cuniculus
ENSCHIG00000015559	-	99	75.503	ENSOCUG00000025183	-	96	78.521	Oryctolagus_cuniculus
ENSCHIG00000015559	-	99	79.070	ENSOCUG00000026649	-	95	81.818	Oryctolagus_cuniculus
ENSCHIG00000015559	-	91	50.735	ENSORLG00000010552	smn1	94	52.206	Oryzias_latipes
ENSCHIG00000015559	-	91	51.852	ENSORLG00020007936	smn1	93	51.838	Oryzias_latipes_hni
ENSCHIG00000015559	-	91	50.554	ENSORLG00015022425	smn1	94	51.471	Oryzias_latipes_hsok
ENSCHIG00000015559	-	91	48.519	ENSOMEG00000007824	smn1	94	53.846	Oryzias_melastigma
ENSCHIG00000015559	-	90	77.206	ENSOGAG00000031414	-	94	76.103	Otolemur_garnettii
ENSCHIG00000015559	-	93	95.636	ENSOARG00000005425	-	100	95.636	Ovis_aries
ENSCHIG00000015559	-	95	84.752	ENSPPAG00000036640	-	95	85.130	Pan_paniscus
ENSCHIG00000015559	-	100	84.848	ENSPPRG00000005575	-	97	86.620	Panthera_pardus
ENSCHIG00000015559	-	100	85.185	ENSPTIG00000007745	-	97	86.972	Panthera_tigris_altaica
ENSCHIG00000015559	-	95	84.155	ENSPTRG00000016955	-	95	84.871	Pan_troglodytes
ENSCHIG00000015559	-	93	80.866	ENSPANG00000000253	-	93	81.227	Papio_anubis
ENSCHIG00000015559	-	99	83.959	ENSPANG00000013601	-	95	85.106	Papio_anubis
ENSCHIG00000015559	-	91	50.719	ENSPKIG00000011096	smn1	94	50.719	Paramormyrops_kingsleyae
ENSCHIG00000015559	-	91	58.781	ENSPSIG00000014787	-	87	60.215	Pelodiscus_sinensis
ENSCHIG00000015559	-	93	46.099	ENSPMGG00000012285	smn1	97	47.766	Periophthalmus_magnuspinnatus
ENSCHIG00000015559	-	88	42.164	ENSPMAG00000005004	smn1	91	40.590	Petromyzon_marinus
ENSCHIG00000015559	-	97	69.097	ENSPCIG00000025764	-	97	69.258	Phascolarctos_cinereus
ENSCHIG00000015559	-	91	52.364	ENSPFOG00000007786	smn1	94	52.206	Poecilia_formosa
ENSCHIG00000015559	-	91	52.727	ENSPLAG00000012071	smn1	94	52.574	Poecilia_latipinna
ENSCHIG00000015559	-	91	52.364	ENSPMEG00000017085	smn1	94	52.206	Poecilia_mexicana
ENSCHIG00000015559	-	91	52.899	ENSPREG00000005824	smn1	94	52.364	Poecilia_reticulata
ENSCHIG00000015559	-	85	52.590	ENSPPYG00000019189	-	99	52.988	Pongo_abelii
ENSCHIG00000015559	-	90	83.955	ENSPPYG00000015533	-	96	84.328	Pongo_abelii
ENSCHIG00000015559	-	90	75.458	ENSPCAG00000004187	-	100	76.557	Procavia_capensis
ENSCHIG00000015559	-	68	81.683	ENSPCOG00000022307	-	100	69.582	Propithecus_coquereli
ENSCHIG00000015559	-	95	87.986	ENSPVAG00000005977	-	96	87.676	Pteropus_vampyrus
ENSCHIG00000015559	-	91	52.045	ENSPNYG00000014148	smn1	94	53.137	Pundamilia_nyererei
ENSCHIG00000015559	-	91	45.926	ENSPNAG00000014007	smn1	83	49.291	Pygocentrus_nattereri
ENSCHIG00000015559	-	100	75.168	ENSRNOG00000018067	Smn1	97	76.678	Rattus_norvegicus
ENSCHIG00000015559	-	94	71.731	ENSRBIG00000036775	-	93	72.924	Rhinopithecus_bieti
ENSCHIG00000015559	-	94	85.357	ENSRBIG00000037052	-	95	85.357	Rhinopithecus_bieti
ENSCHIG00000015559	-	97	71.626	ENSRROG00000031088	-	95	72.438	Rhinopithecus_roxellana
ENSCHIG00000015559	-	94	85.357	ENSRROG00000039399	-	95	85.357	Rhinopithecus_roxellana
ENSCHIG00000015559	-	82	77.291	ENSSBOG00000020112	-	94	72.794	Saimiri_boliviensis_boliviensis
ENSCHIG00000015559	-	95	81.851	ENSSBOG00000011665	-	95	81.915	Saimiri_boliviensis_boliviensis
ENSCHIG00000015559	-	97	69.097	ENSSHAG00000001499	-	100	66.906	Sarcophilus_harrisii
ENSCHIG00000015559	-	91	50.903	ENSSFOG00015015507	smn1	94	50.530	Scleropages_formosus
ENSCHIG00000015559	-	91	48.754	ENSSMAG00000007922	smn1	94	51.648	Scophthalmus_maximus
ENSCHIG00000015559	-	91	51.264	ENSSDUG00000018533	smn1	94	53.676	Seriola_dumerili
ENSCHIG00000015559	-	91	51.625	ENSSLDG00000021135	smn1	94	54.044	Seriola_lalandi_dorsalis
ENSCHIG00000015559	-	91	62.362	ENSSPUG00000000373	-	93	63.469	Sphenodon_punctatus
ENSCHIG00000015559	-	91	52.518	ENSSPAG00000004345	smn1	94	52.158	Stegastes_partitus
ENSCHIG00000015559	-	95	83.392	ENSSSCG00000016970	-	96	87.324	Sus_scrofa
ENSCHIG00000015559	-	96	62.676	ENSSSCG00000029127	-	94	64.085	Sus_scrofa
ENSCHIG00000015559	-	73	58.605	ENSSSCG00000033865	-	95	58.605	Sus_scrofa
ENSCHIG00000015559	-	92	59.431	ENSTGUG00000001548	-	96	61.049	Taeniopygia_guttata
ENSCHIG00000015559	-	56	54.819	ENSTRUG00000000736	smn	95	48.014	Takifugu_rubripes
ENSCHIG00000015559	-	92	50.704	ENSTNIG00000009892	smn1	95	51.220	Tetraodon_nigroviridis
ENSCHIG00000015559	-	62	83.696	ENSTBEG00000002399	-	95	85.279	Tupaia_belangeri
ENSCHIG00000015559	-	100	85.859	ENSTTRG00000005080	-	100	86.869	Tursiops_truncatus
ENSCHIG00000015559	-	62	87.500	ENSUAMG00000024947	-	74	86.829	Ursus_americanus
ENSCHIG00000015559	-	96	88.732	ENSUMAG00000007842	-	72	88.732	Ursus_maritimus
ENSCHIG00000015559	-	91	74.349	ENSVPAG00000009887	-	96	74.721	Vicugna_pacos
ENSCHIG00000015559	-	96	86.972	ENSVVUG00000006934	-	97	86.972	Vulpes_vulpes
ENSCHIG00000015559	-	92	55.357	ENSXETG00000018189	smn2	92	55.674	Xenopus_tropicalis
ENSCHIG00000015559	-	90	36.299	ENSXETG00000004912	-	79	60.317	Xenopus_tropicalis
ENSCHIG00000015559	-	92	52.313	ENSXMAG00000001521	smn1	95	51.439	Xiphophorus_maculatus