EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000015769 (Gene tree)
Gene ID: 102183105
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 26447 bases
Position: chr1:72614016-72640462
Accession: 102183105
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000015009	MMR_HSR1	PF01926.23	6.1e-14	1	1
ENSCHIP00000014990	MMR_HSR1	PF01926.23	6.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000022791	LSG1-201	2675	XM_018046507	ENSCHIP00000014990	653 (aa)	XP_017901996	UPI000846D7AD
ENSCHIT00000022810	LSG1-202	1941	-	ENSCHIP00000015009	646 (aa)	-	UPI000D190E2D

Gene Model

Click here to download ENSCHIG00000015769's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000015769's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000015769	LSG1	99	83.891	ENSG00000041802	LSG1	98	92.529	Homo_sapiens
ENSCHIG00000015769	LSG1	100	65.031	ENSAPOG00000009694	lsg1	100	65.184	Acanthochromis_polyacanthus
ENSCHIG00000015769	LSG1	100	82.424	ENSAMEG00000009343	LSG1	100	82.424	Ailuropoda_melanoleuca
ENSCHIG00000015769	LSG1	98	66.038	ENSACIG00000012406	lsg1	100	66.254	Amphilophus_citrinellus
ENSCHIG00000015769	LSG1	100	64.319	ENSAOCG00000016066	lsg1	100	64.472	Amphiprion_ocellaris
ENSCHIG00000015769	LSG1	100	64.715	ENSAPEG00000003252	lsg1	100	64.715	Amphiprion_percula
ENSCHIG00000015769	LSG1	98	65.197	ENSATEG00000011794	lsg1	100	63.444	Anabas_testudineus
ENSCHIG00000015769	LSG1	95	66.188	ENSACAG00000004222	LSG1	99	65.342	Anolis_carolinensis
ENSCHIG00000015769	LSG1	99	85.562	ENSANAG00000021153	LSG1	99	85.562	Aotus_nancymaae
ENSCHIG00000015769	LSG1	100	64.350	ENSACLG00000000520	lsg1	100	63.910	Astatotilapia_calliptera
ENSCHIG00000015769	LSG1	100	64.536	ENSAMXG00000008271	lsg1	100	64.536	Astyanax_mexicanus
ENSCHIG00000015769	LSG1	99	96.319	ENSBTAG00000008461	LSG1	99	96.319	Bos_taurus
ENSCHIG00000015769	LSG1	75	51.020	WBGene00016907	C53H9.2	95	52.414	Caenorhabditis_elegans
ENSCHIG00000015769	LSG1	99	84.954	ENSCJAG00000013962	LSG1	99	84.954	Callithrix_jacchus
ENSCHIG00000015769	LSG1	95	82.588	ENSCAFG00000013445	LSG1	100	82.588	Canis_familiaris
ENSCHIG00000015769	LSG1	100	81.571	ENSCAFG00020002216	LSG1	100	81.571	Canis_lupus_dingo
ENSCHIG00000015769	LSG1	99	85.410	ENSTSYG00000001447	LSG1	99	85.410	Carlito_syrichta
ENSCHIG00000015769	LSG1	95	76.849	ENSCAPG00000009856	LSG1	99	76.509	Cavia_aperea
ENSCHIG00000015769	LSG1	99	84.043	ENSCCAG00000035744	LSG1	99	84.043	Cebus_capucinus
ENSCHIG00000015769	LSG1	99	84.347	ENSCATG00000042060	LSG1	99	82.827	Cercocebus_atys
ENSCHIG00000015769	LSG1	99	84.347	ENSCSAG00000008796	LSG1	92	84.347	Chlorocebus_sabaeus
ENSCHIG00000015769	LSG1	100	69.894	ENSCPBG00000015941	LSG1	83	69.440	Chrysemys_picta_bellii
ENSCHIG00000015769	LSG1	78	54.585	ENSCING00000007079	-	99	61.579	Ciona_intestinalis
ENSCHIG00000015769	LSG1	78	54.365	ENSCSAVG00000002514	-	100	54.365	Ciona_savignyi
ENSCHIG00000015769	LSG1	99	84.043	ENSCANG00000030709	LSG1	99	84.043	Colobus_angolensis_palliatus
ENSCHIG00000015769	LSG1	99	82.236	ENSCGRG00001019846	Lsg1	99	82.236	Cricetulus_griseus_chok1gshd
ENSCHIG00000015769	LSG1	99	82.236	ENSCGRG00000014617	Lsg1	99	82.236	Cricetulus_griseus_crigri
ENSCHIG00000015769	LSG1	98	64.798	ENSCSEG00000008522	lsg1	100	62.946	Cynoglossus_semilaevis
ENSCHIG00000015769	LSG1	98	66.190	ENSCVAG00000002484	lsg1	100	66.254	Cyprinodon_variegatus
ENSCHIG00000015769	LSG1	100	66.309	ENSDARG00000015352	lsg1	100	65.408	Danio_rerio
ENSCHIG00000015769	LSG1	99	82.317	ENSDNOG00000006224	LSG1	99	82.012	Dasypus_novemcinctus
ENSCHIG00000015769	LSG1	99	47.086	FBgn0266284	Ns3	99	46.933	Drosophila_melanogaster
ENSCHIG00000015769	LSG1	88	85.333	ENSETEG00000003888	LSG1	89	85.333	Echinops_telfairi
ENSCHIG00000015769	LSG1	89	57.238	ENSEBUG00000003119	lsg1	85	57.095	Eptatretus_burgeri
ENSCHIG00000015769	LSG1	99	84.498	ENSEASG00005000678	LSG1	99	84.498	Equus_asinus_asinus
ENSCHIG00000015769	LSG1	99	84.802	ENSECAG00000017659	LSG1	99	84.802	Equus_caballus
ENSCHIG00000015769	LSG1	87	79.487	ENSEEUG00000015217	LSG1	87	79.487	Erinaceus_europaeus
ENSCHIG00000015769	LSG1	100	62.308	ENSELUG00000023973	lsg1	100	62.308	Esox_lucius
ENSCHIG00000015769	LSG1	100	85.736	ENSFCAG00000024957	LSG1	100	85.736	Felis_catus
ENSCHIG00000015769	LSG1	92	66.775	ENSFALG00000007210	LSG1	94	66.775	Ficedula_albicollis
ENSCHIG00000015769	LSG1	99	77.984	ENSFDAG00000017373	LSG1	99	77.054	Fukomys_damarensis
ENSCHIG00000015769	LSG1	97	65.039	ENSFHEG00000003680	lsg1	99	63.528	Fundulus_heteroclitus
ENSCHIG00000015769	LSG1	98	61.025	ENSGMOG00000015834	lsg1	88	71.032	Gadus_morhua
ENSCHIG00000015769	LSG1	99	64.565	ENSGALG00000007058	LSG1	87	64.750	Gallus_gallus
ENSCHIG00000015769	LSG1	97	65.342	ENSGAFG00000015831	lsg1	99	65.581	Gambusia_affinis
ENSCHIG00000015769	LSG1	98	63.158	ENSGACG00000009323	lsg1	100	63.497	Gasterosteus_aculeatus
ENSCHIG00000015769	LSG1	99	84.347	ENSGGOG00000000520	LSG1	99	84.347	Gorilla_gorilla
ENSCHIG00000015769	LSG1	100	64.536	ENSHBUG00000005659	lsg1	100	64.688	Haplochromis_burtoni
ENSCHIG00000015769	LSG1	99	77.231	ENSHGLG00000017390	LSG1	99	77.846	Heterocephalus_glaber_female
ENSCHIG00000015769	LSG1	99	77.231	ENSHGLG00100018587	LSG1	99	77.846	Heterocephalus_glaber_male
ENSCHIG00000015769	LSG1	98	64.252	ENSHCOG00000016848	lsg1	100	63.190	Hippocampus_comes
ENSCHIG00000015769	LSG1	100	64.715	ENSIPUG00000008631	lsg1	100	64.561	Ictalurus_punctatus
ENSCHIG00000015769	LSG1	81	78.800	ENSSTOG00000010234	LSG1	99	78.800	Ictidomys_tridecemlineatus
ENSCHIG00000015769	LSG1	99	79.268	ENSJJAG00000015513	Lsg1	99	79.268	Jaculus_jaculus
ENSCHIG00000015769	LSG1	98	63.722	ENSKMAG00000009681	lsg1	100	63.134	Kryptolebias_marmoratus
ENSCHIG00000015769	LSG1	98	64.669	ENSLBEG00000024261	lsg1	100	63.988	Labrus_bergylta
ENSCHIG00000015769	LSG1	100	66.466	ENSLACG00000013399	LSG1	100	66.165	Latimeria_chalumnae
ENSCHIG00000015769	LSG1	98	66.615	ENSLOCG00000004918	lsg1	100	65.113	Lepisosteus_oculatus
ENSCHIG00000015769	LSG1	99	81.442	ENSLAFG00000012919	-	99	81.442	Loxodonta_africana
ENSCHIG00000015769	LSG1	99	84.347	ENSMFAG00000039903	LSG1	99	82.827	Macaca_fascicularis
ENSCHIG00000015769	LSG1	99	84.498	ENSMMUG00000010708	LSG1	99	84.498	Macaca_mulatta
ENSCHIG00000015769	LSG1	99	84.498	ENSMNEG00000031538	LSG1	99	82.979	Macaca_nemestrina
ENSCHIG00000015769	LSG1	99	84.498	ENSMLEG00000041184	LSG1	99	84.498	Mandrillus_leucophaeus
ENSCHIG00000015769	LSG1	100	64.012	ENSMAMG00000000470	lsg1	100	64.012	Mastacembelus_armatus
ENSCHIG00000015769	LSG1	100	64.536	ENSMZEG00005017865	lsg1	100	64.688	Maylandia_zebra
ENSCHIG00000015769	LSG1	89	65.878	ENSMGAG00000007050	LSG1	99	66.440	Meleagris_gallopavo
ENSCHIG00000015769	LSG1	91	81.072	ENSMAUG00000016976	Lsg1	93	80.905	Mesocricetus_auratus
ENSCHIG00000015769	LSG1	99	83.359	ENSMICG00000049087	LSG1	99	83.359	Microcebus_murinus
ENSCHIG00000015769	LSG1	99	80.458	ENSMOCG00000022136	Lsg1	99	79.847	Microtus_ochrogaster
ENSCHIG00000015769	LSG1	85	72.131	ENSMMOG00000008884	lsg1	98	71.206	Mola_mola
ENSCHIG00000015769	LSG1	99	59.187	ENSMODG00000019828	LSG1	99	59.140	Monodelphis_domestica
ENSCHIG00000015769	LSG1	100	81.579	MGP_CAROLIEiJ_G0020648	Lsg1	100	81.579	Mus_caroli
ENSCHIG00000015769	LSG1	100	81.889	ENSMUSG00000022538	Lsg1	100	81.889	Mus_musculus
ENSCHIG00000015769	LSG1	98	81.406	MGP_PahariEiJ_G0016352	Lsg1	100	81.957	Mus_pahari
ENSCHIG00000015769	LSG1	100	81.889	MGP_SPRETEiJ_G0021544	Lsg1	100	81.889	Mus_spretus
ENSCHIG00000015769	LSG1	100	83.005	ENSMPUG00000003734	LSG1	100	83.005	Mustela_putorius_furo
ENSCHIG00000015769	LSG1	100	85.321	ENSMLUG00000012548	LSG1	100	85.321	Myotis_lucifugus
ENSCHIG00000015769	LSG1	99	80.982	ENSNGAG00000021872	Lsg1	99	80.368	Nannospalax_galili
ENSCHIG00000015769	LSG1	99	84.498	ENSNLEG00000008293	LSG1	99	84.498	Nomascus_leucogenys
ENSCHIG00000015769	LSG1	70	72.165	ENSMEUG00000009041	-	84	72.165	Notamacropus_eugenii
ENSCHIG00000015769	LSG1	100	64.134	ENSONIG00000002635	lsg1	100	64.848	Oreochromis_niloticus
ENSCHIG00000015769	LSG1	95	73.151	ENSOANG00000012742	LSG1	99	71.865	Ornithorhynchus_anatinus
ENSCHIG00000015769	LSG1	99	83.283	ENSOCUG00000004817	LSG1	99	83.283	Oryctolagus_cuniculus
ENSCHIG00000015769	LSG1	98	65.245	ENSORLG00000007695	lsg1	100	65.170	Oryzias_latipes
ENSCHIG00000015769	LSG1	98	64.455	ENSORLG00020016286	lsg1	100	63.817	Oryzias_latipes_hni
ENSCHIG00000015769	LSG1	98	64.613	ENSORLG00015012025	lsg1	100	64.241	Oryzias_latipes_hsok
ENSCHIG00000015769	LSG1	98	64.826	ENSOMEG00000022379	lsg1	100	64.352	Oryzias_melastigma
ENSCHIG00000015769	LSG1	99	82.477	ENSOGAG00000003475	LSG1	99	82.477	Otolemur_garnettii
ENSCHIG00000015769	LSG1	100	98.777	ENSOARG00000020403	LSG1	100	98.777	Ovis_aries
ENSCHIG00000015769	LSG1	99	84.498	ENSPPAG00000029271	LSG1	99	84.498	Pan_paniscus
ENSCHIG00000015769	LSG1	100	84.384	ENSPPRG00000010281	LSG1	100	84.384	Panthera_pardus
ENSCHIG00000015769	LSG1	100	85.432	ENSPTIG00000010789	LSG1	100	85.432	Panthera_tigris_altaica
ENSCHIG00000015769	LSG1	99	84.347	ENSPTRG00000015760	LSG1	99	84.347	Pan_troglodytes
ENSCHIG00000015769	LSG1	99	84.347	ENSPANG00000018249	LSG1	99	82.827	Papio_anubis
ENSCHIG00000015769	LSG1	97	65.669	ENSPKIG00000002895	lsg1	99	65.438	Paramormyrops_kingsleyae
ENSCHIG00000015769	LSG1	96	66.091	ENSPSIG00000009821	LSG1	100	65.109	Pelodiscus_sinensis
ENSCHIG00000015769	LSG1	95	66.288	ENSPMGG00000000931	lsg1	100	66.126	Periophthalmus_magnuspinnatus
ENSCHIG00000015769	LSG1	99	81.221	ENSPEMG00000012082	-	99	80.092	Peromyscus_maniculatus_bairdii
ENSCHIG00000015769	LSG1	99	60.209	ENSPMAG00000007451	lsg1	99	58.926	Petromyzon_marinus
ENSCHIG00000015769	LSG1	100	67.358	ENSPCIG00000013890	LSG1	82	67.358	Phascolarctos_cinereus
ENSCHIG00000015769	LSG1	97	66.456	ENSPFOG00000021882	lsg1	99	66.156	Poecilia_formosa
ENSCHIG00000015769	LSG1	97	65.665	ENSPLAG00000019536	lsg1	99	65.850	Poecilia_latipinna
ENSCHIG00000015769	LSG1	97	65.773	ENSPMEG00000017281	lsg1	99	65.496	Poecilia_mexicana
ENSCHIG00000015769	LSG1	97	55.470	ENSPREG00000006048	lsg1	99	54.315	Poecilia_reticulata
ENSCHIG00000015769	LSG1	92	83.224	ENSPPYG00000014425	LSG1	100	81.908	Pongo_abelii
ENSCHIG00000015769	LSG1	90	85.333	ENSPCAG00000005511	LSG1	90	85.333	Procavia_capensis
ENSCHIG00000015769	LSG1	99	83.283	ENSPCOG00000012360	LSG1	99	83.283	Propithecus_coquereli
ENSCHIG00000015769	LSG1	100	64.199	ENSPNYG00000021994	lsg1	100	63.759	Pundamilia_nyererei
ENSCHIG00000015769	LSG1	100	65.396	ENSPNAG00000015533	lsg1	100	65.291	Pygocentrus_nattereri
ENSCHIG00000015769	LSG1	100	81.887	ENSRNOG00000001727	Lsg1	100	81.887	Rattus_norvegicus
ENSCHIG00000015769	LSG1	99	83.435	ENSRBIG00000029053	LSG1	99	83.435	Rhinopithecus_bieti
ENSCHIG00000015769	LSG1	99	83.435	ENSRROG00000037702	LSG1	99	83.435	Rhinopithecus_roxellana
ENSCHIG00000015769	LSG1	63	56.287	YGL099W	LSG1	65	56.886	Saccharomyces_cerevisiae
ENSCHIG00000015769	LSG1	99	85.106	ENSSBOG00000034938	LSG1	99	85.106	Saimiri_boliviensis_boliviensis
ENSCHIG00000015769	LSG1	78	66.479	ENSSHAG00000003487	LSG1	100	66.160	Sarcophilus_harrisii
ENSCHIG00000015769	LSG1	98	64.561	ENSSFOG00015008955	lsg1	100	64.145	Scleropages_formosus
ENSCHIG00000015769	LSG1	98	66.304	ENSSDUG00000004622	lsg1	100	66.003	Seriola_dumerili
ENSCHIG00000015769	LSG1	98	66.876	ENSSLDG00000010869	lsg1	100	65.244	Seriola_lalandi_dorsalis
ENSCHIG00000015769	LSG1	82	80.702	ENSSARG00000012981	LSG1	81	80.702	Sorex_araneus
ENSCHIG00000015769	LSG1	100	67.879	ENSSPUG00000016347	LSG1	100	67.825	Sphenodon_punctatus
ENSCHIG00000015769	LSG1	100	63.790	ENSSPAG00000005508	lsg1	100	64.407	Stegastes_partitus
ENSCHIG00000015769	LSG1	100	87.616	ENSSSCG00000011827	LSG1	100	86.533	Sus_scrofa
ENSCHIG00000015769	LSG1	89	65.159	ENSTGUG00000009068	LSG1	100	65.159	Taeniopygia_guttata
ENSCHIG00000015769	LSG1	98	62.303	ENSTRUG00000017380	lsg1	100	62.191	Takifugu_rubripes
ENSCHIG00000015769	LSG1	98	65.039	ENSTNIG00000015570	lsg1	100	64.297	Tetraodon_nigroviridis
ENSCHIG00000015769	LSG1	100	83.639	ENSTTRG00000000559	LSG1	100	82.263	Tursiops_truncatus
ENSCHIG00000015769	LSG1	100	83.308	ENSUAMG00000012454	LSG1	100	83.308	Ursus_americanus
ENSCHIG00000015769	LSG1	100	83.308	ENSUMAG00000000855	LSG1	100	83.308	Ursus_maritimus
ENSCHIG00000015769	LSG1	95	82.907	ENSVPAG00000012400	LSG1	100	82.907	Vicugna_pacos
ENSCHIG00000015769	LSG1	95	81.789	ENSVVUG00000008956	LSG1	97	81.789	Vulpes_vulpes
ENSCHIG00000015769	LSG1	100	67.325	ENSXETG00000003451	lsg1	100	68.085	Xenopus_tropicalis
ENSCHIG00000015769	LSG1	97	65.719	ENSXCOG00000003239	lsg1	99	64.861	Xiphophorus_couchianus
ENSCHIG00000015769	LSG1	97	65.142	ENSXMAG00000005536	lsg1	99	64.861	Xiphophorus_maculatus