EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000015833 (Gene tree)
Gene ID: 102177177
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 14156 bases
Position: chr14:81386353-81400508
Accession: 102177177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000015170	CPSF_A	PF03178.15	1.6e-79	1	2
ENSCHIP00000015170	CPSF_A	PF03178.15	1.6e-79	2	2
ENSCHIP00000015181	CPSF_A	PF03178.15	1.9e-79	1	2
ENSCHIP00000015181	CPSF_A	PF03178.15	1.9e-79	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000022971	CPSF1-201	4248	XM_018058736	ENSCHIP00000015170	1415 (aa)	XP_017914225	UPI000D192BF4
ENSCHIT00000022983	CPSF1-202	4197	-	ENSCHIP00000015181	1398 (aa)	-	UPI000D191033

Gene Model

Click here to download ENSCHIG00000015833's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000015833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000015833	CPSF1	100	90.771	ENSG00000071894	CPSF1	100	90.771	Homo_sapiens
ENSCHIG00000015833	CPSF1	100	73.851	ENSAPOG00000019621	cpsf1	100	74.257	Acanthochromis_polyacanthus
ENSCHIG00000015833	CPSF1	97	89.822	ENSAMEG00000005557	CPSF1	100	89.822	Ailuropoda_melanoleuca
ENSCHIG00000015833	CPSF1	100	76.022	ENSACIG00000006112	cpsf1	100	76.299	Amphilophus_citrinellus
ENSCHIG00000015833	CPSF1	100	75.190	ENSAOCG00000007120	cpsf1	100	75.465	Amphiprion_ocellaris
ENSCHIG00000015833	CPSF1	100	75.413	ENSAPEG00000005755	cpsf1	100	75.860	Amphiprion_percula
ENSCHIG00000015833	CPSF1	100	74.072	ENSATEG00000011097	cpsf1	100	74.497	Anabas_testudineus
ENSCHIG00000015833	CPSF1	91	80.623	ENSACAG00000009655	CPSF1	96	80.623	Anolis_carolinensis
ENSCHIG00000015833	CPSF1	100	90.972	ENSANAG00000036514	CPSF1	100	90.972	Aotus_nancymaae
ENSCHIG00000015833	CPSF1	100	73.940	ENSACLG00000012231	cpsf1	99	75.300	Astatotilapia_calliptera
ENSCHIG00000015833	CPSF1	100	69.577	ENSAMXG00000008485	cpsf1	100	69.854	Astyanax_mexicanus
ENSCHIG00000015833	CPSF1	100	92.610	ENSBTAG00000008355	CPSF1	100	92.610	Bos_taurus
ENSCHIG00000015833	CPSF1	100	30.901	WBGene00022301	cpsf-1	99	35.511	Caenorhabditis_elegans
ENSCHIG00000015833	CPSF1	100	92.771	ENSCJAG00000021421	CPSF1	100	92.771	Callithrix_jacchus
ENSCHIG00000015833	CPSF1	97	91.382	ENSCAFG00000001600	CPSF1	100	91.382	Canis_familiaris
ENSCHIG00000015833	CPSF1	100	91.655	ENSCAFG00020020821	CPSF1	100	91.655	Canis_lupus_dingo
ENSCHIG00000015833	CPSF1	100	91.110	ENSTSYG00000028560	CPSF1	99	96.522	Carlito_syrichta
ENSCHIG00000015833	CPSF1	97	89.451	ENSCAPG00000014921	CPSF1	99	89.451	Cavia_aperea
ENSCHIG00000015833	CPSF1	100	89.390	ENSCPOG00000011448	CPSF1	100	89.390	Cavia_porcellus
ENSCHIG00000015833	CPSF1	100	91.041	ENSCCAG00000037658	CPSF1	100	91.041	Cebus_capucinus
ENSCHIG00000015833	CPSF1	100	90.696	ENSCATG00000037234	CPSF1	99	95.858	Cercocebus_atys
ENSCHIG00000015833	CPSF1	100	91.117	ENSCLAG00000012166	CPSF1	100	91.117	Chinchilla_lanigera
ENSCHIG00000015833	CPSF1	100	90.852	ENSCSAG00000008502	CPSF1	100	90.852	Chlorocebus_sabaeus
ENSCHIG00000015833	CPSF1	99	82.925	ENSCPBG00000018910	CPSF1	96	82.925	Chrysemys_picta_bellii
ENSCHIG00000015833	CPSF1	96	45.973	ENSCING00000000514	-	100	45.973	Ciona_intestinalis
ENSCHIG00000015833	CPSF1	99	46.254	ENSCSAVG00000002293	-	99	46.254	Ciona_savignyi
ENSCHIG00000015833	CPSF1	99	85.605	ENSCANG00000032760	CPSF1	99	85.605	Colobus_angolensis_palliatus
ENSCHIG00000015833	CPSF1	100	90.361	ENSCGRG00001016344	Cpsf1	100	90.361	Cricetulus_griseus_chok1gshd
ENSCHIG00000015833	CPSF1	100	88.072	ENSCGRG00000003118	Cpsf1	100	88.280	Cricetulus_griseus_crigri
ENSCHIG00000015833	CPSF1	100	73.666	ENSCSEG00000013464	cpsf1	100	73.666	Cynoglossus_semilaevis
ENSCHIG00000015833	CPSF1	85	72.032	ENSCVAG00000014059	cpsf1	100	61.574	Cyprinodon_variegatus
ENSCHIG00000015833	CPSF1	100	75.496	ENSDARG00000034178	cpsf1	100	75.620	Danio_rerio
ENSCHIG00000015833	CPSF1	58	93.357	ENSDNOG00000043654	CPSF1	94	88.728	Dasypus_novemcinctus
ENSCHIG00000015833	CPSF1	96	90.555	ENSDORG00000006278	Cpsf1	99	90.555	Dipodomys_ordii
ENSCHIG00000015833	CPSF1	100	43.050	FBgn0024698	Cpsf160	100	42.992	Drosophila_melanogaster
ENSCHIG00000015833	CPSF1	80	88.549	ENSETEG00000006022	CPSF1	83	88.549	Echinops_telfairi
ENSCHIG00000015833	CPSF1	100	92.138	ENSEASG00005010774	CPSF1	100	92.138	Equus_asinus_asinus
ENSCHIG00000015833	CPSF1	100	92.138	ENSECAG00000022209	CPSF1	100	92.138	Equus_caballus
ENSCHIG00000015833	CPSF1	100	89.772	ENSEEUG00000000471	CPSF1	100	89.772	Erinaceus_europaeus
ENSCHIG00000015833	CPSF1	100	74.572	ENSELUG00000012271	cpsf1	100	74.914	Esox_lucius
ENSCHIG00000015833	CPSF1	100	91.250	ENSFDAG00000016060	CPSF1	100	91.250	Fukomys_damarensis
ENSCHIG00000015833	CPSF1	100	73.329	ENSFHEG00000016801	cpsf1	100	73.535	Fundulus_heteroclitus
ENSCHIG00000015833	CPSF1	100	74.294	ENSGMOG00000000796	cpsf1	100	74.431	Gadus_morhua
ENSCHIG00000015833	CPSF1	100	72.277	ENSGAFG00000018890	cpsf1	100	72.702	Gambusia_affinis
ENSCHIG00000015833	CPSF1	100	74.672	ENSGACG00000008703	cpsf1	100	74.811	Gasterosteus_aculeatus
ENSCHIG00000015833	CPSF1	100	82.424	ENSGAGG00000004276	CPSF1	98	85.726	Gopherus_agassizii
ENSCHIG00000015833	CPSF1	100	90.828	ENSGGOG00000016185	CPSF1	100	90.828	Gorilla_gorilla
ENSCHIG00000015833	CPSF1	100	75.623	ENSHBUG00000018900	cpsf1	100	75.986	Haplochromis_burtoni
ENSCHIG00000015833	CPSF1	100	91.187	ENSHGLG00000016139	CPSF1	100	91.187	Heterocephalus_glaber_female
ENSCHIG00000015833	CPSF1	100	91.117	ENSHGLG00100009750	CPSF1	100	91.117	Heterocephalus_glaber_male
ENSCHIG00000015833	CPSF1	100	73.040	ENSHCOG00000018509	cpsf1	100	73.177	Hippocampus_comes
ENSCHIG00000015833	CPSF1	100	72.180	ENSIPUG00000011259	cpsf1	100	72.180	Ictalurus_punctatus
ENSCHIG00000015833	CPSF1	97	90.128	ENSSTOG00000009957	CPSF1	99	90.128	Ictidomys_tridecemlineatus
ENSCHIG00000015833	CPSF1	100	90.625	ENSJJAG00000023002	Cpsf1	100	90.675	Jaculus_jaculus
ENSCHIG00000015833	CPSF1	91	75.235	ENSKMAG00000001940	cpsf1	99	74.922	Kryptolebias_marmoratus
ENSCHIG00000015833	CPSF1	100	73.772	ENSLBEG00000003601	cpsf1	100	74.204	Labrus_bergylta
ENSCHIG00000015833	CPSF1	87	73.741	ENSLACG00000000233	CPSF1	100	64.540	Latimeria_chalumnae
ENSCHIG00000015833	CPSF1	100	73.637	ENSLOCG00000008484	cpsf1	100	73.913	Lepisosteus_oculatus
ENSCHIG00000015833	CPSF1	97	89.950	ENSLAFG00000022601	CPSF1	100	89.950	Loxodonta_africana
ENSCHIG00000015833	CPSF1	100	90.696	ENSMFAG00000037013	CPSF1	99	95.562	Macaca_fascicularis
ENSCHIG00000015833	CPSF1	100	90.765	ENSMMUG00000007380	CPSF1	98	95.886	Macaca_mulatta
ENSCHIG00000015833	CPSF1	97	90.663	ENSMNEG00000043564	CPSF1	100	90.663	Macaca_nemestrina
ENSCHIG00000015833	CPSF1	100	90.852	ENSMLEG00000043010	CPSF1	99	95.562	Mandrillus_leucophaeus
ENSCHIG00000015833	CPSF1	100	74.459	ENSMAMG00000003803	cpsf1	100	74.731	Mastacembelus_armatus
ENSCHIG00000015833	CPSF1	100	74.079	ENSMZEG00005001168	cpsf1	100	74.427	Maylandia_zebra
ENSCHIG00000015833	CPSF1	100	90.499	ENSMAUG00000003601	Cpsf1	100	90.499	Mesocricetus_auratus
ENSCHIG00000015833	CPSF1	100	91.331	ENSMICG00000015767	CPSF1	100	91.331	Microcebus_murinus
ENSCHIG00000015833	CPSF1	100	90.569	ENSMOCG00000022758	Cpsf1	100	90.569	Microtus_ochrogaster
ENSCHIG00000015833	CPSF1	100	75.017	ENSMMOG00000021245	cpsf1	100	75.363	Mola_mola
ENSCHIG00000015833	CPSF1	100	88.522	ENSMODG00000010755	CPSF1	100	88.522	Monodelphis_domestica
ENSCHIG00000015833	CPSF1	100	74.001	ENSMALG00000020545	cpsf1	100	74.290	Monopterus_albus
ENSCHIG00000015833	CPSF1	100	90.707	MGP_CAROLIEiJ_G0019936	Cpsf1	100	90.707	Mus_caroli
ENSCHIG00000015833	CPSF1	100	90.638	ENSMUSG00000034022	Cpsf1	100	90.638	Mus_musculus
ENSCHIG00000015833	CPSF1	100	90.707	MGP_PahariEiJ_G0019946	Cpsf1	100	90.707	Mus_pahari
ENSCHIG00000015833	CPSF1	100	90.638	MGP_SPRETEiJ_G0020839	Cpsf1	100	90.638	Mus_spretus
ENSCHIG00000015833	CPSF1	94	90.667	ENSMPUG00000006419	CPSF1	93	90.667	Mustela_putorius_furo
ENSCHIG00000015833	CPSF1	100	90.361	ENSNGAG00000022460	Cpsf1	100	90.361	Nannospalax_galili
ENSCHIG00000015833	CPSF1	100	71.528	ENSNBRG00000000813	cpsf1	100	71.409	Neolamprologus_brichardi
ENSCHIG00000015833	CPSF1	87	82.788	ENSNLEG00000010633	-	99	83.028	Nomascus_leucogenys
ENSCHIG00000015833	CPSF1	79	89.969	ENSMEUG00000014922	CPSF1	83	90.111	Notamacropus_eugenii
ENSCHIG00000015833	CPSF1	62	86.408	ENSOPRG00000004693	-	71	86.408	Ochotona_princeps
ENSCHIG00000015833	CPSF1	100	91.187	ENSODEG00000013995	CPSF1	100	91.187	Octodon_degus
ENSCHIG00000015833	CPSF1	100	76.039	ENSONIG00000007676	cpsf1	100	76.332	Oreochromis_niloticus
ENSCHIG00000015833	CPSF1	57	89.583	ENSOANG00000010716	CPSF1	84	89.583	Ornithorhynchus_anatinus
ENSCHIG00000015833	CPSF1	100	73.469	ENSORLG00000013544	cpsf1	100	73.810	Oryzias_latipes
ENSCHIG00000015833	CPSF1	100	73.537	ENSORLG00020021693	cpsf1	100	73.878	Oryzias_latipes_hni
ENSCHIG00000015833	CPSF1	100	73.623	ENSORLG00015009979	cpsf1	100	73.963	Oryzias_latipes_hsok
ENSCHIG00000015833	CPSF1	100	73.338	ENSOMEG00000011849	cpsf1	100	73.860	Oryzias_melastigma
ENSCHIG00000015833	CPSF1	100	91.407	ENSOGAG00000000315	CPSF1	100	91.407	Otolemur_garnettii
ENSCHIG00000015833	CPSF1	100	90.834	ENSPPAG00000019280	CPSF1	100	90.834	Pan_paniscus
ENSCHIG00000015833	CPSF1	100	90.834	ENSPTRG00000049288	-	100	90.834	Pan_troglodytes
ENSCHIG00000015833	CPSF1	100	89.295	ENSPTRG00000051253	-	100	89.295	Pan_troglodytes
ENSCHIG00000015833	CPSF1	97	90.520	ENSPANG00000015005	CPSF1	100	90.520	Papio_anubis
ENSCHIG00000015833	CPSF1	100	76.401	ENSPKIG00000002582	cpsf1	100	76.783	Paramormyrops_kingsleyae
ENSCHIG00000015833	CPSF1	100	88.454	ENSPCIG00000009035	CPSF1	100	88.454	Phascolarctos_cinereus
ENSCHIG00000015833	CPSF1	100	73.189	ENSPFOG00000012870	cpsf1	100	73.460	Poecilia_formosa
ENSCHIG00000015833	CPSF1	100	72.684	ENSPREG00000016307	cpsf1	100	72.869	Poecilia_reticulata
ENSCHIG00000015833	CPSF1	100	83.776	ENSPPYG00000018973	CPSF1	100	83.776	Pongo_abelii
ENSCHIG00000015833	CPSF1	91	89.834	ENSPCAG00000011541	CPSF1	94	89.834	Procavia_capensis
ENSCHIG00000015833	CPSF1	95	100.000	ENSPCOG00000020001	CPSF1	94	100.000	Propithecus_coquereli
ENSCHIG00000015833	CPSF1	91	90.729	ENSPVAG00000006761	CPSF1	91	91.667	Pteropus_vampyrus
ENSCHIG00000015833	CPSF1	100	74.778	ENSPNYG00000004906	cpsf1	100	74.983	Pundamilia_nyererei
ENSCHIG00000015833	CPSF1	100	72.125	ENSPNAG00000024395	cpsf1	100	72.125	Pygocentrus_nattereri
ENSCHIG00000015833	CPSF1	100	90.707	ENSRNOG00000030705	Cpsf1	100	90.707	Rattus_norvegicus
ENSCHIG00000015833	CPSF1	100	90.834	ENSRBIG00000044907	CPSF1	98	95.858	Rhinopithecus_bieti
ENSCHIG00000015833	CPSF1	100	90.765	ENSRROG00000044861	CPSF1	98	95.858	Rhinopithecus_roxellana
ENSCHIG00000015833	CPSF1	97	90.592	ENSSBOG00000027177	CPSF1	100	90.592	Saimiri_boliviensis_boliviensis
ENSCHIG00000015833	CPSF1	100	88.316	ENSSHAG00000006500	CPSF1	100	88.316	Sarcophilus_harrisii
ENSCHIG00000015833	CPSF1	100	74.414	ENSSFOG00015004606	cpsf1	100	76.962	Scleropages_formosus
ENSCHIG00000015833	CPSF1	100	73.866	ENSSMAG00000020547	cpsf1	100	74.001	Scophthalmus_maximus
ENSCHIG00000015833	CPSF1	100	75.850	ENSSDUG00000001100	cpsf1	100	76.075	Seriola_dumerili
ENSCHIG00000015833	CPSF1	100	75.833	ENSSLDG00000003619	cpsf1	100	76.197	Seriola_lalandi_dorsalis
ENSCHIG00000015833	CPSF1	89	95.833	ENSSARG00000003643	CPSF1	92	95.833	Sorex_araneus
ENSCHIG00000015833	CPSF1	96	82.841	ENSSPUG00000014396	CPSF1	100	82.674	Sphenodon_punctatus
ENSCHIG00000015833	CPSF1	100	74.104	ENSSPAG00000005349	cpsf1	100	74.442	Stegastes_partitus
ENSCHIG00000015833	CPSF1	100	91.310	ENSSSCG00000005906	CPSF1	100	91.310	Sus_scrofa
ENSCHIG00000015833	CPSF1	96	74.508	ENSTRUG00000013134	cpsf1	99	74.649	Takifugu_rubripes
ENSCHIG00000015833	CPSF1	100	74.264	ENSTNIG00000014027	cpsf1	100	74.470	Tetraodon_nigroviridis
ENSCHIG00000015833	CPSF1	79	89.391	ENSTBEG00000001756	CPSF1	91	89.391	Tupaia_belangeri
ENSCHIG00000015833	CPSF1	90	92.500	ENSTTRG00000001937	CPSF1	90	92.500	Tursiops_truncatus
ENSCHIG00000015833	CPSF1	97	91.738	ENSUAMG00000006476	CPSF1	98	91.738	Ursus_americanus
ENSCHIG00000015833	CPSF1	100	74.133	ENSXCOG00000003608	cpsf1	100	74.411	Xiphophorus_couchianus
ENSCHIG00000015833	CPSF1	100	73.615	ENSXMAG00000005798	cpsf1	100	74.030	Xiphophorus_maculatus