EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000015890 (Gene tree)
Gene ID: 102171331
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 3064 bases
Position: chr13:71653504-71656567
Accession: 102171331
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000015133	RRM_1	PF00076.22	8.4e-33	1	2
ENSCHIP00000015133	RRM_1	PF00076.22	8.4e-33	2	2
ENSCHIP00000015135	RRM_1	PF00076.22	2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000022935	-	1038	XM_018057890	ENSCHIP00000015133	345 (aa)	XP_017913379	UPI0006B132BF
ENSCHIT00000022937	-	408	-	ENSCHIP00000015135	135 (aa)	-	UPI00023AE22D

Gene Model

Click here to download ENSCHIG00000015890's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03040	Spliceosome	KEGG
chx05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000015890's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000015890	-	50	73.134	ENSCHIG00000016794	SRSF5	66	64.674
ENSCHIG00000015890	-	56	46.835	ENSCHIG00000019180	SRSF7	58	46.835
ENSCHIG00000015890	-	100	99.420	ENSCHIG00000009148	-	100	99.420
ENSCHIG00000015890	-	56	45.570	ENSCHIG00000009659	-	64	45.570
ENSCHIG00000015890	-	57	41.148	ENSCHIG00000010787	SRSF1	78	42.584
ENSCHIG00000015890	-	51	48.649	ENSCHIG00000025274	SRSF9	71	42.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000015890	-	100	99.259	ENSG00000124193	SRSF6	100	99.259	Homo_sapiens
ENSCHIG00000015890	-	58	94.872	ENSAPOG00000016635	-	84	83.088	Acanthochromis_polyacanthus
ENSCHIG00000015890	-	94	88.000	ENSAMEG00000003710	SRSF6	94	88.000	Ailuropoda_melanoleuca
ENSCHIG00000015890	-	63	88.235	ENSACIG00000020091	-	95	81.102	Amphilophus_citrinellus
ENSCHIG00000015890	-	65	84.091	ENSAOCG00000004309	-	57	83.696	Amphiprion_ocellaris
ENSCHIG00000015890	-	92	68.702	ENSAOCG00000019438	-	98	68.702	Amphiprion_ocellaris
ENSCHIG00000015890	-	98	62.590	ENSAPEG00000013086	-	53	88.172	Amphiprion_percula
ENSCHIG00000015890	-	63	85.882	ENSAPEG00000020746	-	66	80.319	Amphiprion_percula
ENSCHIG00000015890	-	66	84.270	ENSATEG00000007255	-	71	80.541	Anabas_testudineus
ENSCHIG00000015890	-	94	81.595	ENSACAG00000002061	SRSF6	92	82.919	Anolis_carolinensis
ENSCHIG00000015890	-	100	99.259	ENSANAG00000024080	SRSF6	100	99.259	Aotus_nancymaae
ENSCHIG00000015890	-	54	90.411	ENSACLG00000024373	-	96	80.645	Astatotilapia_calliptera
ENSCHIG00000015890	-	55	93.243	ENSAMXG00000042692	-	96	78.519	Astyanax_mexicanus
ENSCHIG00000015890	-	55	91.892	ENSAMXG00000003101	-	51	84.737	Astyanax_mexicanus
ENSCHIG00000015890	-	100	100.000	ENSBTAG00000008527	SRSF6	100	100.000	Bos_taurus
ENSCHIG00000015890	-	100	99.259	ENSCJAG00000048403	SRSF6	100	99.259	Callithrix_jacchus
ENSCHIG00000015890	-	100	100.000	ENSCAFG00000009289	SRSF6	100	100.000	Canis_familiaris
ENSCHIG00000015890	-	100	100.000	ENSCAFG00020013559	SRSF6	100	100.000	Canis_lupus_dingo
ENSCHIG00000015890	-	100	83.478	ENSTSYG00000026476	SRSF6	100	83.478	Carlito_syrichta
ENSCHIG00000015890	-	100	99.259	ENSCPOG00000011761	SRSF6	100	99.259	Cavia_porcellus
ENSCHIG00000015890	-	94	69.632	ENSCCAG00000018540	-	62	86.702	Cebus_capucinus
ENSCHIG00000015890	-	100	99.259	ENSCCAG00000026018	-	100	99.259	Cebus_capucinus
ENSCHIG00000015890	-	100	99.259	ENSCATG00000030794	SRSF6	100	99.259	Cercocebus_atys
ENSCHIG00000015890	-	100	99.259	ENSCLAG00000010247	SRSF6	100	99.259	Chinchilla_lanigera
ENSCHIG00000015890	-	100	97.681	ENSCSAG00000014022	SRSF6	100	97.681	Chlorocebus_sabaeus
ENSCHIG00000015890	-	100	82.899	ENSCHOG00000000561	SRSF6	100	82.899	Choloepus_hoffmanni
ENSCHIG00000015890	-	58	96.154	ENSCPBG00000018200	SRSF6	94	85.015	Chrysemys_picta_bellii
ENSCHIG00000015890	-	100	83.188	ENSCANG00000042529	-	100	83.188	Colobus_angolensis_palliatus
ENSCHIG00000015890	-	100	97.391	ENSCANG00000037774	-	100	97.391	Colobus_angolensis_palliatus
ENSCHIG00000015890	-	100	99.259	ENSCGRG00001022339	Srsf6	100	99.259	Cricetulus_griseus_chok1gshd
ENSCHIG00000015890	-	63	95.370	ENSCGRG00000006618	Srsf6	100	95.370	Cricetulus_griseus_crigri
ENSCHIG00000015890	-	58	94.872	ENSCSEG00000019778	SRSF6	90	84.252	Cynoglossus_semilaevis
ENSCHIG00000015890	-	58	93.590	ENSCVAG00000001863	SRSF6	95	85.039	Cyprinodon_variegatus
ENSCHIG00000015890	-	55	91.892	ENSDARG00000016783	srsf6b	87	90.361	Danio_rerio
ENSCHIG00000015890	-	94	96.296	ENSDNOG00000008410	SRSF6	94	96.296	Dasypus_novemcinctus
ENSCHIG00000015890	-	100	99.259	ENSDORG00000028378	Srsf6	100	99.259	Dipodomys_ordii
ENSCHIG00000015890	-	93	93.750	ENSETEG00000006221	SRSF6	94	91.358	Echinops_telfairi
ENSCHIG00000015890	-	100	99.130	ENSEASG00005023429	SRSF6	100	99.130	Equus_asinus_asinus
ENSCHIG00000015890	-	100	99.130	ENSECAG00000023932	SRSF6	100	99.130	Equus_caballus
ENSCHIG00000015890	-	57	95.385	ENSEEUG00000002324	SRSF6	90	95.431	Erinaceus_europaeus
ENSCHIG00000015890	-	73	78.788	ENSELUG00000013506	SRSF6	88	78.788	Esox_lucius
ENSCHIG00000015890	-	98	60.000	ENSELUG00000024182	SRSF6	85	88.506	Esox_lucius
ENSCHIG00000015890	-	100	99.710	ENSFCAG00000032814	SRSF6	100	99.710	Felis_catus
ENSCHIG00000015890	-	94	80.864	ENSFDAG00000012191	SRSF6	93	78.395	Fukomys_damarensis
ENSCHIG00000015890	-	87	71.053	ENSFHEG00000023065	srsf6a	55	87.500	Fundulus_heteroclitus
ENSCHIG00000015890	-	56	89.474	ENSGMOG00000014458	srsf6a	52	77.604	Gadus_morhua
ENSCHIG00000015890	-	100	96.296	ENSGALG00000000990	SRSF6	100	96.296	Gallus_gallus
ENSCHIG00000015890	-	58	93.590	ENSGAFG00000019088	-	72	82.400	Gambusia_affinis
ENSCHIG00000015890	-	98	61.940	ENSGACG00000006084	srsf6a	53	83.871	Gasterosteus_aculeatus
ENSCHIG00000015890	-	58	96.154	ENSGAGG00000003238	SRSF6	94	85.015	Gopherus_agassizii
ENSCHIG00000015890	-	100	99.259	ENSGGOG00000009808	SRSF6	100	99.259	Gorilla_gorilla
ENSCHIG00000015890	-	56	90.789	ENSHBUG00000006386	-	58	84.239	Haplochromis_burtoni
ENSCHIG00000015890	-	100	99.259	ENSHGLG00000007348	SRSF6	100	99.259	Heterocephalus_glaber_female
ENSCHIG00000015890	-	90	76.527	ENSHGLG00000007701	-	58	78.075	Heterocephalus_glaber_female
ENSCHIG00000015890	-	94	81.173	ENSHGLG00100005043	SRSF6	93	78.704	Heterocephalus_glaber_male
ENSCHIG00000015890	-	58	88.462	ENSHCOG00000002740	srsf6a	57	82.065	Hippocampus_comes
ENSCHIG00000015890	-	58	93.590	ENSIPUG00000004776	-	72	76.233	Ictalurus_punctatus
ENSCHIG00000015890	-	100	99.259	ENSSTOG00000010866	SRSF6	100	99.259	Ictidomys_tridecemlineatus
ENSCHIG00000015890	-	56	94.301	ENSJJAG00000020690	Srsf6	91	93.333	Jaculus_jaculus
ENSCHIG00000015890	-	87	66.777	ENSKMAG00000011934	srsf6a	59	85.870	Kryptolebias_marmoratus
ENSCHIG00000015890	-	58	93.590	ENSLBEG00000007356	srsf6a	52	85.484	Labrus_bergylta
ENSCHIG00000015890	-	96	78.824	ENSLACG00000005466	SRSF6	96	73.476	Latimeria_chalumnae
ENSCHIG00000015890	-	75	95.753	ENSLAFG00000006682	SRSF6	100	95.753	Loxodonta_africana
ENSCHIG00000015890	-	100	99.259	ENSMFAG00000036925	SRSF6	100	99.259	Macaca_fascicularis
ENSCHIG00000015890	-	100	99.259	ENSMMUG00000006742	SRSF6	100	99.259	Macaca_mulatta
ENSCHIG00000015890	-	100	97.778	ENSMNEG00000027392	-	100	97.778	Macaca_nemestrina
ENSCHIG00000015890	-	100	96.232	ENSMNEG00000038270	-	100	96.232	Macaca_nemestrina
ENSCHIG00000015890	-	63	97.222	ENSMLEG00000031524	SRSF6	100	97.222	Mandrillus_leucophaeus
ENSCHIG00000015890	-	98	62.590	ENSMAMG00000017161	srsf6a	53	87.634	Mastacembelus_armatus
ENSCHIG00000015890	-	63	88.235	ENSMAMG00000023477	-	89	88.235	Mastacembelus_armatus
ENSCHIG00000015890	-	98	59.091	ENSMZEG00005020658	-	60	82.873	Maylandia_zebra
ENSCHIG00000015890	-	56	90.789	ENSMZEG00005008032	-	57	84.239	Maylandia_zebra
ENSCHIG00000015890	-	100	99.259	ENSMAUG00000019086	-	100	99.259	Mesocricetus_auratus
ENSCHIG00000015890	-	100	99.259	ENSMICG00000008537	SRSF6	100	99.259	Microcebus_murinus
ENSCHIG00000015890	-	63	95.370	ENSMOCG00000018738	Srsf6	100	95.370	Microtus_ochrogaster
ENSCHIG00000015890	-	58	93.590	ENSMMOG00000015241	-	78	91.566	Mola_mola
ENSCHIG00000015890	-	58	96.154	ENSMODG00000003107	SRSF6	95	87.077	Monodelphis_domestica
ENSCHIG00000015890	-	100	99.259	MGP_CAROLIEiJ_G0024606	Srsf6	100	99.259	Mus_caroli
ENSCHIG00000015890	-	100	99.259	ENSMUSG00000016921	Srsf6	100	99.259	Mus_musculus
ENSCHIG00000015890	-	100	99.259	MGP_PahariEiJ_G0026050	Srsf6	100	99.259	Mus_pahari
ENSCHIG00000015890	-	100	99.259	MGP_SPRETEiJ_G0025528	Srsf6	100	99.259	Mus_spretus
ENSCHIG00000015890	-	83	99.653	ENSMPUG00000017692	SRSF6	99	99.653	Mustela_putorius_furo
ENSCHIG00000015890	-	93	81.515	ENSMLUG00000016618	SRSF6	94	83.025	Myotis_lucifugus
ENSCHIG00000015890	-	100	99.259	ENSNGAG00000017560	Srsf6	100	99.259	Nannospalax_galili
ENSCHIG00000015890	-	58	94.872	ENSNBRG00000001846	-	52	87.634	Neolamprologus_brichardi
ENSCHIG00000015890	-	56	90.789	ENSNBRG00000014709	-	58	84.239	Neolamprologus_brichardi
ENSCHIG00000015890	-	100	99.259	ENSNLEG00000006524	SRSF6	100	99.259	Nomascus_leucogenys
ENSCHIG00000015890	-	58	96.154	ENSMEUG00000014615	SRSF6	62	95.745	Notamacropus_eugenii
ENSCHIG00000015890	-	75	97.297	ENSOPRG00000002017	-	100	97.297	Ochotona_princeps
ENSCHIG00000015890	-	100	99.259	ENSODEG00000016510	-	100	99.259	Octodon_degus
ENSCHIG00000015890	-	61	87.805	ENSONIG00000020247	-	53	84.783	Oreochromis_niloticus
ENSCHIG00000015890	-	74	57.480	ENSOCUG00000023999	-	70	62.570	Oryctolagus_cuniculus
ENSCHIG00000015890	-	84	81.046	ENSOCUG00000009785	-	98	84.459	Oryctolagus_cuniculus
ENSCHIG00000015890	-	58	93.590	ENSORLG00020017506	srsf6a	90	69.032	Oryzias_latipes_hni
ENSCHIG00000015890	-	94	96.923	ENSOGAG00000014468	SRSF6	94	97.222	Otolemur_garnettii
ENSCHIG00000015890	-	100	95.942	ENSOARG00000003117	SRSF6	100	95.942	Ovis_aries
ENSCHIG00000015890	-	100	97.399	ENSPPAG00000034327	-	100	97.399	Pan_paniscus
ENSCHIG00000015890	-	90	84.244	ENSPPAG00000043131	-	100	86.495	Pan_paniscus
ENSCHIG00000015890	-	100	99.710	ENSPPRG00000008917	SRSF6	100	99.710	Panthera_pardus
ENSCHIG00000015890	-	63	99.537	ENSPTIG00000019153	SRSF6	100	99.537	Panthera_tigris_altaica
ENSCHIG00000015890	-	90	84.244	ENSPTRG00000046274	-	100	86.495	Pan_troglodytes
ENSCHIG00000015890	-	100	99.259	ENSPTRG00000044686	-	100	99.259	Pan_troglodytes
ENSCHIG00000015890	-	100	99.259	ENSPANG00000035224	SRSF6	100	99.259	Papio_anubis
ENSCHIG00000015890	-	59	76.250	ENSPKIG00000015703	-	95	60.403	Paramormyrops_kingsleyae
ENSCHIG00000015890	-	100	66.857	ENSPKIG00000018463	-	83	90.476	Paramormyrops_kingsleyae
ENSCHIG00000015890	-	58	94.872	ENSPKIG00000015603	-	88	84.252	Paramormyrops_kingsleyae
ENSCHIG00000015890	-	89	71.935	ENSPMGG00000014963	srsf6a	55	89.130	Periophthalmus_magnuspinnatus
ENSCHIG00000015890	-	85	87.931	ENSPEMG00000022405	-	96	87.931	Peromyscus_maniculatus_bairdii
ENSCHIG00000015890	-	100	97.778	ENSPCIG00000003820	SRSF6	100	97.778	Phascolarctos_cinereus
ENSCHIG00000015890	-	58	93.590	ENSPFOG00000006437	srsf6a	50	83.158	Poecilia_formosa
ENSCHIG00000015890	-	87	65.409	ENSPLAG00000009243	srsf6a	80	82.677	Poecilia_latipinna
ENSCHIG00000015890	-	58	93.590	ENSPMEG00000006042	SRSF6	54	87.027	Poecilia_mexicana
ENSCHIG00000015890	-	59	92.405	ENSPREG00000001040	srsf6a	87	83.846	Poecilia_reticulata
ENSCHIG00000015890	-	100	97.688	ENSPPYG00000011019	SRSF6	100	97.688	Pongo_abelii
ENSCHIG00000015890	-	58	97.436	ENSPCAG00000010954	SRSF6	56	97.861	Procavia_capensis
ENSCHIG00000015890	-	100	99.259	ENSPCOG00000026364	SRSF6	100	99.259	Propithecus_coquereli
ENSCHIG00000015890	-	100	96.812	ENSPVAG00000015232	SRSF6	100	96.812	Pteropus_vampyrus
ENSCHIG00000015890	-	56	90.789	ENSPNYG00000004944	-	58	84.239	Pundamilia_nyererei
ENSCHIG00000015890	-	58	94.872	ENSPNYG00000011272	-	51	87.634	Pundamilia_nyererei
ENSCHIG00000015890	-	59	93.750	ENSPNAG00000023179	-	94	82.677	Pygocentrus_nattereri
ENSCHIG00000015890	-	99	96.471	ENSRNOG00000006380	Srsf6	99	96.471	Rattus_norvegicus
ENSCHIG00000015890	-	100	95.942	ENSRBIG00000041414	SRSF6	100	95.942	Rhinopithecus_bieti
ENSCHIG00000015890	-	100	99.259	ENSRROG00000029989	SRSF6	100	99.259	Rhinopithecus_roxellana
ENSCHIG00000015890	-	93	69.782	ENSSBOG00000034078	-	54	76.243	Saimiri_boliviensis_boliviensis
ENSCHIG00000015890	-	100	99.259	ENSSBOG00000033708	-	100	99.259	Saimiri_boliviensis_boliviensis
ENSCHIG00000015890	-	58	96.154	ENSSHAG00000012805	SRSF6	95	87.077	Sarcophilus_harrisii
ENSCHIG00000015890	-	55	94.595	ENSSFOG00015015169	SRSF6	60	89.130	Scleropages_formosus
ENSCHIG00000015890	-	89	64.985	ENSSFOG00015019681	-	53	81.959	Scleropages_formosus
ENSCHIG00000015890	-	56	89.474	ENSSMAG00000017447	-	55	80.435	Scophthalmus_maximus
ENSCHIG00000015890	-	59	91.250	ENSSMAG00000014861	-	95	67.188	Scophthalmus_maximus
ENSCHIG00000015890	-	63	88.235	ENSSDUG00000011036	-	90	88.235	Seriola_dumerili
ENSCHIG00000015890	-	98	61.871	ENSSDUG00000016097	srsf6a	53	87.634	Seriola_dumerili
ENSCHIG00000015890	-	98	62.590	ENSSLDG00000022841	srsf6a	54	87.634	Seriola_lalandi_dorsalis
ENSCHIG00000015890	-	63	88.235	ENSSLDG00000014858	-	90	88.235	Seriola_lalandi_dorsalis
ENSCHIG00000015890	-	75	97.683	ENSSARG00000001602	SRSF6	100	97.683	Sorex_araneus
ENSCHIG00000015890	-	100	96.296	ENSSPUG00000004967	SRSF6	100	96.296	Sphenodon_punctatus
ENSCHIG00000015890	-	98	62.590	ENSSPAG00000002362	srsf6a	67	86.243	Stegastes_partitus
ENSCHIG00000015890	-	63	85.882	ENSSPAG00000021913	-	86	85.882	Stegastes_partitus
ENSCHIG00000015890	-	100	99.130	ENSSSCG00000007362	SRSF6	100	99.130	Sus_scrofa
ENSCHIG00000015890	-	93	84.923	ENSTGUG00000003455	SRSF6	94	84.709	Taeniopygia_guttata
ENSCHIG00000015890	-	59	93.750	ENSTRUG00000021397	-	87	93.750	Takifugu_rubripes
ENSCHIG00000015890	-	87	70.627	ENSTNIG00000001692	srsf6a	57	86.022	Tetraodon_nigroviridis
ENSCHIG00000015890	-	85	93.493	ENSTBEG00000013448	SRSF6	92	93.814	Tupaia_belangeri
ENSCHIG00000015890	-	75	98.842	ENSTTRG00000015410	SRSF6	100	98.842	Tursiops_truncatus
ENSCHIG00000015890	-	100	100.000	ENSUAMG00000003559	SRSF6	100	100.000	Ursus_americanus
ENSCHIG00000015890	-	63	99.537	ENSUMAG00000001154	SRSF6	100	99.537	Ursus_maritimus
ENSCHIG00000015890	-	83	100.000	ENSVPAG00000003016	SRSF6	83	100.000	Vicugna_pacos
ENSCHIG00000015890	-	100	79.259	ENSVVUG00000019276	-	100	79.259	Vulpes_vulpes
ENSCHIG00000015890	-	58	93.590	ENSXMAG00000021849	srsf6a	55	86.413	Xiphophorus_maculatus