EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000016026 (Gene tree)
Gene ID: 102183221
Gene Symbol: -
Alias: -
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 6466 bases
Position: chr6:15899962-15906427
Accession: 102183221
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000015341	Gar1	PF04410.14	5e-39	1	1
ENSCHIP00000015336	Gar1	PF04410.14	5.3e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000023143	-	630	XM_005681312	ENSCHIP00000015341	209 (aa)	XP_005681369	UPI000D18E655
ENSCHIT00000023138	-	645	-	ENSCHIP00000015336	214 (aa)	-	UPI000D1913AE

Gene Model

Click here to download ENSCHIG00000016026's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000016026's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000016026	-	52	99.083	ENSG00000109534	GAR1	51	99.091	Homo_sapiens
ENSCHIG00000016026	-	51	94.393	ENSAPOG00000019754	gar1	52	92.727	Acanthochromis_polyacanthus
ENSCHIG00000016026	-	97	96.154	ENSAMEG00000004605	GAR1	54	98.182	Ailuropoda_melanoleuca
ENSCHIG00000016026	-	68	85.517	ENSAOCG00000020947	gar1	50	94.393	Amphiprion_ocellaris
ENSCHIG00000016026	-	68	85.517	ENSAPEG00000001676	gar1	50	94.393	Amphiprion_percula
ENSCHIG00000016026	-	51	94.393	ENSATEG00000003733	gar1	50	94.393	Anabas_testudineus
ENSCHIG00000016026	-	51	89.623	ENSAPLG00000010926	GAR1	60	88.889	Anas_platyrhynchos
ENSCHIG00000016026	-	51	91.509	ENSACAG00000010031	GAR1	51	90.741	Anolis_carolinensis
ENSCHIG00000016026	-	52	99.083	ENSANAG00000021608	GAR1	99	90.741	Aotus_nancymaae
ENSCHIG00000016026	-	53	87.273	ENSAMXG00000015752	gar1	74	83.688	Astyanax_mexicanus
ENSCHIG00000016026	-	100	98.131	ENSBTAG00000000748	GAR1	99	99.038	Bos_taurus
ENSCHIG00000016026	-	52	99.083	ENSCJAG00000004041	GAR1	50	99.091	Callithrix_jacchus
ENSCHIG00000016026	-	70	91.275	ENSCAFG00000011503	GAR1	60	91.275	Canis_familiaris
ENSCHIG00000016026	-	87	96.774	ENSCAFG00020015566	GAR1	96	96.774	Canis_lupus_dingo
ENSCHIG00000016026	-	97	93.333	ENSTSYG00000013668	-	99	93.333	Carlito_syrichta
ENSCHIG00000016026	-	76	79.747	ENSTSYG00000026632	-	56	90.909	Carlito_syrichta
ENSCHIG00000016026	-	53	100.000	ENSCPOG00000004216	GAR1	51	100.000	Cavia_porcellus
ENSCHIG00000016026	-	52	99.083	ENSCCAG00000029372	GAR1	99	90.741	Cebus_capucinus
ENSCHIG00000016026	-	53	99.091	ENSCATG00000021854	GAR1	56	99.091	Cercocebus_atys
ENSCHIG00000016026	-	53	98.182	ENSCLAG00000005335	GAR1	96	91.358	Chinchilla_lanigera
ENSCHIG00000016026	-	51	99.065	ENSCSAG00000003922	GAR1	56	99.091	Chlorocebus_sabaeus
ENSCHIG00000016026	-	55	96.552	ENSCHOG00000007484	-	51	96.552	Choloepus_hoffmanni
ENSCHIG00000016026	-	51	92.453	ENSCPBG00000004310	GAR1	76	77.333	Chrysemys_picta_bellii
ENSCHIG00000016026	-	53	98.182	ENSCANG00000039262	GAR1	51	98.182	Colobus_angolensis_palliatus
ENSCHIG00000016026	-	52	95.413	ENSCGRG00001003919	Gar1	50	95.455	Cricetulus_griseus_chok1gshd
ENSCHIG00000016026	-	57	83.193	ENSCGRG00000010165	-	83	92.453	Cricetulus_griseus_crigri
ENSCHIG00000016026	-	51	93.458	ENSCSEG00000003525	gar1	50	91.818	Cynoglossus_semilaevis
ENSCHIG00000016026	-	51	93.458	ENSCVAG00000002103	gar1	53	91.818	Cyprinodon_variegatus
ENSCHIG00000016026	-	51	91.589	ENSDARG00000076526	gar1	52	88.793	Danio_rerio
ENSCHIG00000016026	-	52	98.165	ENSDNOG00000037632	GAR1	56	98.182	Dasypus_novemcinctus
ENSCHIG00000016026	-	66	88.194	ENSDORG00000000482	Gar1	51	96.364	Dipodomys_ordii
ENSCHIG00000016026	-	50	59.615	FBgn0011824	CG4038	79	53.543	Drosophila_melanogaster
ENSCHIG00000016026	-	53	98.182	ENSEASG00005004658	GAR1	66	97.887	Equus_asinus_asinus
ENSCHIG00000016026	-	100	95.370	ENSECAG00000013624	GAR1	100	95.370	Equus_caballus
ENSCHIG00000016026	-	97	97.115	ENSFCAG00000040791	-	99	97.115	Felis_catus
ENSCHIG00000016026	-	61	60.769	ENSFCAG00000025841	-	57	63.866	Felis_catus
ENSCHIG00000016026	-	51	92.453	ENSFALG00000006445	GAR1	56	89.344	Ficedula_albicollis
ENSCHIG00000016026	-	53	90.991	ENSFHEG00000008068	gar1	70	83.893	Fundulus_heteroclitus
ENSCHIG00000016026	-	50	93.269	ENSGAGG00000004393	GAR1	56	90.826	Gopherus_agassizii
ENSCHIG00000016026	-	52	98.165	ENSGGOG00000008681	GAR1	51	98.182	Gorilla_gorilla
ENSCHIG00000016026	-	53	80.180	ENSGGOG00000036205	-	54	80.734	Gorilla_gorilla
ENSCHIG00000016026	-	51	98.131	ENSHGLG00000000493	GAR1	72	100.000	Heterocephalus_glaber_female
ENSCHIG00000016026	-	53	90.000	ENSIPUG00000003194	gar1	63	85.714	Ictalurus_punctatus
ENSCHIG00000016026	-	52	96.330	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
ENSCHIG00000016026	-	53	89.189	ENSKMAG00000010402	gar1	51	91.589	Kryptolebias_marmoratus
ENSCHIG00000016026	-	63	86.607	ENSLACG00000003306	GAR1	65	87.037	Latimeria_chalumnae
ENSCHIG00000016026	-	53	99.091	ENSMFAG00000024592	GAR1	51	99.091	Macaca_fascicularis
ENSCHIG00000016026	-	52	83.333	ENSMFAG00000003572	-	54	81.818	Macaca_fascicularis
ENSCHIG00000016026	-	53	99.091	ENSMMUG00000021225	GAR1	51	99.091	Macaca_mulatta
ENSCHIG00000016026	-	53	99.091	ENSMNEG00000042594	GAR1	51	99.091	Macaca_nemestrina
ENSCHIG00000016026	-	53	99.091	ENSMLEG00000002496	GAR1	50	99.091	Mandrillus_leucophaeus
ENSCHIG00000016026	-	52	95.413	ENSMAUG00000016788	Gar1	90	85.380	Mesocricetus_auratus
ENSCHIG00000016026	-	54	97.321	ENSMICG00000003326	GAR1	51	98.182	Microcebus_murinus
ENSCHIG00000016026	-	52	95.413	ENSMOCG00000001340	Gar1	70	100.000	Microtus_ochrogaster
ENSCHIG00000016026	-	51	95.327	ENSMMOG00000004156	gar1	52	95.327	Mola_mola
ENSCHIG00000016026	-	55	89.474	ENSMODG00000005897	GAR1	54	79.845	Monodelphis_domestica
ENSCHIG00000016026	-	51	92.523	ENSMALG00000009672	gar1	50	92.523	Monopterus_albus
ENSCHIG00000016026	-	52	95.413	MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	Mus_caroli
ENSCHIG00000016026	-	53	95.455	ENSMUSG00000028010	Gar1	70	100.000	Mus_musculus
ENSCHIG00000016026	-	53	97.273	MGP_PahariEiJ_G0027076	Gar1	76	94.366	Mus_pahari
ENSCHIG00000016026	-	53	95.455	MGP_SPRETEiJ_G0026580	Gar1	70	100.000	Mus_spretus
ENSCHIG00000016026	-	97	97.115	ENSMPUG00000008615	GAR1	99	97.115	Mustela_putorius_furo
ENSCHIG00000016026	-	52	99.083	ENSMLUG00000003776	GAR1	99	92.760	Myotis_lucifugus
ENSCHIG00000016026	-	97	92.891	ENSNGAG00000008268	Gar1	99	92.891	Nannospalax_galili
ENSCHIG00000016026	-	53	99.091	ENSNLEG00000016578	GAR1	51	99.091	Nomascus_leucogenys
ENSCHIG00000016026	-	64	74.453	ENSNLEG00000034282	-	56	82.727	Nomascus_leucogenys
ENSCHIG00000016026	-	51	99.065	ENSODEG00000011083	GAR1	57	98.182	Octodon_degus
ENSCHIG00000016026	-	51	94.393	ENSONIG00000001085	gar1	50	92.727	Oreochromis_niloticus
ENSCHIG00000016026	-	51	95.283	ENSOANG00000003665	GAR1	78	74.713	Ornithorhynchus_anatinus
ENSCHIG00000016026	-	52	98.165	ENSOCUG00000003901	GAR1	51	98.182	Oryctolagus_cuniculus
ENSCHIG00000016026	-	51	94.393	ENSORLG00000020583	gar1	50	92.727	Oryzias_latipes
ENSCHIG00000016026	-	51	94.393	ENSORLG00020008602	gar1	50	92.727	Oryzias_latipes_hni
ENSCHIG00000016026	-	51	94.393	ENSORLG00015017643	gar1	50	92.727	Oryzias_latipes_hsok
ENSCHIG00000016026	-	97	93.810	ENSOGAG00000004693	GAR1	99	93.810	Otolemur_garnettii
ENSCHIG00000016026	-	97	100.000	ENSOARG00000004910	GAR1	99	100.000	Ovis_aries
ENSCHIG00000016026	-	52	99.083	ENSPPAG00000014081	GAR1	55	99.091	Pan_paniscus
ENSCHIG00000016026	-	97	97.115	ENSPPRG00000023697	GAR1	99	97.115	Panthera_pardus
ENSCHIG00000016026	-	97	97.115	ENSPTIG00000021565	GAR1	99	97.115	Panthera_tigris_altaica
ENSCHIG00000016026	-	53	99.091	ENSPTRG00000016364	GAR1	56	99.091	Pan_troglodytes
ENSCHIG00000016026	-	79	81.651	ENSPTRG00000049340	-	51	80.556	Pan_troglodytes
ENSCHIG00000016026	-	53	99.091	ENSPANG00000000639	GAR1	51	99.091	Papio_anubis
ENSCHIG00000016026	-	51	93.396	ENSPKIG00000018991	gar1	63	85.000	Paramormyrops_kingsleyae
ENSCHIG00000016026	-	51	92.453	ENSPSIG00000002970	GAR1	50	90.909	Pelodiscus_sinensis
ENSCHIG00000016026	-	52	95.413	ENSPEMG00000015838	Gar1	70	98.182	Peromyscus_maniculatus_bairdii
ENSCHIG00000016026	-	52	92.593	ENSPCIG00000018912	GAR1	67	73.125	Phascolarctos_cinereus
ENSCHIG00000016026	-	51	92.523	ENSPFOG00000024155	gar1	51	92.523	Poecilia_formosa
ENSCHIG00000016026	-	51	92.523	ENSPLAG00000015056	gar1	51	92.523	Poecilia_latipinna
ENSCHIG00000016026	-	51	93.458	ENSPMEG00000009320	gar1	53	91.818	Poecilia_mexicana
ENSCHIG00000016026	-	52	99.083	ENSPPYG00000014996	GAR1	51	99.091	Pongo_abelii
ENSCHIG00000016026	-	65	97.857	ENSPCOG00000027049	GAR1	72	98.592	Propithecus_coquereli
ENSCHIG00000016026	-	53	90.909	ENSPNAG00000019686	gar1	61	84.000	Pygocentrus_nattereri
ENSCHIG00000016026	-	53	96.364	ENSRNOG00000061146	Gar1	64	96.364	Rattus_norvegicus
ENSCHIG00000016026	-	54	81.250	ENSRBIG00000042411	-	53	80.909	Rhinopithecus_bieti
ENSCHIG00000016026	-	51	99.065	ENSRBIG00000019547	GAR1	56	99.091	Rhinopithecus_bieti
ENSCHIG00000016026	-	53	99.091	ENSRROG00000028454	GAR1	56	99.091	Rhinopithecus_roxellana
ENSCHIG00000016026	-	54	81.250	ENSRROG00000044348	-	53	80.909	Rhinopithecus_roxellana
ENSCHIG00000016026	-	52	99.083	ENSSBOG00000024785	GAR1	51	99.091	Saimiri_boliviensis_boliviensis
ENSCHIG00000016026	-	51	93.396	ENSSHAG00000002161	GAR1	55	83.465	Sarcophilus_harrisii
ENSCHIG00000016026	-	51	91.589	ENSSMAG00000009976	gar1	50	90.000	Scophthalmus_maximus
ENSCHIG00000016026	-	51	93.458	ENSSLDG00000023264	gar1	52	91.818	Seriola_lalandi_dorsalis
ENSCHIG00000016026	-	51	93.396	ENSSPUG00000008707	GAR1	61	91.818	Sphenodon_punctatus
ENSCHIG00000016026	-	98	97.608	ENSSSCG00000009137	GAR1	100	97.608	Sus_scrofa
ENSCHIG00000016026	-	51	90.654	ENSTRUG00000020580	gar1	53	89.091	Takifugu_rubripes
ENSCHIG00000016026	-	50	93.269	ENSTNIG00000013023	gar1	63	91.818	Tetraodon_nigroviridis
ENSCHIG00000016026	-	51	99.057	ENSUAMG00000005652	GAR1	57	99.091	Ursus_americanus
ENSCHIG00000016026	-	97	95.673	ENSUMAG00000000776	GAR1	53	99.091	Ursus_maritimus
ENSCHIG00000016026	-	97	98.077	ENSVPAG00000009844	GAR1	87	98.077	Vicugna_pacos
ENSCHIG00000016026	-	88	96.825	ENSVVUG00000017612	GAR1	99	95.714	Vulpes_vulpes