EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000016375 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 7869 bases
Position: chr15:30315565-30323433
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000015917	ResIII	PF04851.15	7.5e-11	1	1
ENSCHIP00000015923	ResIII	PF04851.15	7.8e-11	1	1
ENSCHIP00000015906	ResIII	PF04851.15	8.1e-11	1	1
ENSCHIP00000015906	DEAD	PF00270.29	4.6e-06	1	1
ENSCHIP00000015917	DEAD	PF00270.29	4.7e-06	1	1
ENSCHIP00000015923	DEAD	PF00270.29	4.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000023729	-	3126	-	ENSCHIP00000015923	1041 (aa)	-	UPI000D194F33
ENSCHIT00000023712	-	3057	-	ENSCHIP00000015906	1018 (aa)	-	UPI000D190C24
ENSCHIT00000023723	-	3090	-	ENSCHIP00000015917	1029 (aa)	-	UPI000D192C3F

Gene Model

Click here to download ENSCHIG00000016375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000016375's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000016375	-	95	84.098	ENSCHIG00000009837	SMARCA1	97	81.445
ENSCHIG00000016375	-	54	41.463	ENSCHIG00000013871	CHD1L	62	41.187
ENSCHIG00000016375	-	100	98.289	ENSCHIG00000013730	-	100	98.289

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000016375	-	100	96.958	ENSG00000153147	SMARCA5	100	96.958	Homo_sapiens
ENSCHIG00000016375	-	100	97.719	ENSAMEG00000009585	SMARCA5	100	97.719	Ailuropoda_melanoleuca
ENSCHIG00000016375	-	93	95.170	ENSAPLG00000009206	SMARCA5	100	95.175	Anas_platyrhynchos
ENSCHIG00000016375	-	99	92.539	ENSACAG00000003038	SMARCA5	99	92.539	Anolis_carolinensis
ENSCHIG00000016375	-	100	96.863	ENSANAG00000019345	SMARCA5	100	96.863	Aotus_nancymaae
ENSCHIG00000016375	-	100	97.814	ENSBTAG00000003399	SMARCA5	100	97.814	Bos_taurus
ENSCHIG00000016375	-	100	97.053	ENSCJAG00000002735	SMARCA5	100	97.053	Callithrix_jacchus
ENSCHIG00000016375	-	100	97.338	ENSCAFG00000007525	SMARCA5	100	97.338	Canis_familiaris
ENSCHIG00000016375	-	98	97.287	ENSCAFG00020025641	SMARCA5	99	97.287	Canis_lupus_dingo
ENSCHIG00000016375	-	97	96.822	ENSTSYG00000009954	SMARCA5	99	98.063	Carlito_syrichta
ENSCHIG00000016375	-	94	97.314	ENSCAPG00000013747	SMARCA5	95	97.314	Cavia_aperea
ENSCHIG00000016375	-	100	96.103	ENSCPOG00000002259	SMARCA5	100	96.103	Cavia_porcellus
ENSCHIG00000016375	-	100	97.053	ENSCCAG00000027215	SMARCA5	100	97.053	Cebus_capucinus
ENSCHIG00000016375	-	100	97.053	ENSCATG00000044917	SMARCA5	100	97.053	Cercocebus_atys
ENSCHIG00000016375	-	95	97.655	ENSCLAG00000006153	SMARCA5	100	97.583	Chinchilla_lanigera
ENSCHIG00000016375	-	94	97.730	ENSCSAG00000003448	SMARCA5	100	97.730	Chlorocebus_sabaeus
ENSCHIG00000016375	-	90	96.583	ENSCHOG00000011724	SMARCA5	90	96.583	Choloepus_hoffmanni
ENSCHIG00000016375	-	99	93.834	ENSCPBG00000027535	SMARCA5	99	93.834	Chrysemys_picta_bellii
ENSCHIG00000016375	-	100	96.863	ENSCANG00000041629	SMARCA5	100	96.863	Colobus_angolensis_palliatus
ENSCHIG00000016375	-	99	96.293	ENSCGRG00001012719	Smarca5	99	96.293	Cricetulus_griseus_chok1gshd
ENSCHIG00000016375	-	96	97.492	ENSCGRG00000001417	Smarca5	99	97.684	Cricetulus_griseus_crigri
ENSCHIG00000016375	-	100	94.106	ENSDNOG00000009158	SMARCA5	100	94.106	Dasypus_novemcinctus
ENSCHIG00000016375	-	96	91.760	ENSDORG00000003466	Smarca5	97	91.489	Dipodomys_ordii
ENSCHIG00000016375	-	99	79.712	ENSEBUG00000014773	SMARCA5	96	83.988	Eptatretus_burgeri
ENSCHIG00000016375	-	100	97.529	ENSEASG00005001866	SMARCA5	100	97.529	Equus_asinus_asinus
ENSCHIG00000016375	-	100	97.529	ENSECAG00000002676	SMARCA5	100	97.529	Equus_caballus
ENSCHIG00000016375	-	95	93.578	ENSEEUG00000013176	SMARCA5	100	93.454	Erinaceus_europaeus
ENSCHIG00000016375	-	94	87.526	ENSELUG00000014653	SMARCA5	99	87.526	Esox_lucius
ENSCHIG00000016375	-	100	97.814	ENSFCAG00000004544	SMARCA5	100	97.814	Felis_catus
ENSCHIG00000016375	-	94	95.773	ENSFALG00000004987	SMARCA5	100	95.773	Ficedula_albicollis
ENSCHIG00000016375	-	97	97.012	ENSFDAG00000021016	SMARCA5	100	97.784	Fukomys_damarensis
ENSCHIG00000016375	-	95	87.718	ENSGMOG00000007519	SMARCA5	98	85.054	Gadus_morhua
ENSCHIG00000016375	-	98	94.608	ENSGALG00000009913	SMARCA5	98	94.608	Gallus_gallus
ENSCHIG00000016375	-	95	88.946	ENSGACG00000017238	SMARCA5	95	88.946	Gasterosteus_aculeatus
ENSCHIG00000016375	-	99	94.461	ENSGAGG00000019882	SMARCA5	97	95.665	Gopherus_agassizii
ENSCHIG00000016375	-	100	96.958	ENSGGOG00000012595	SMARCA5	100	96.958	Gorilla_gorilla
ENSCHIG00000016375	-	97	87.861	ENSHGLG00000000317	-	97	87.081	Heterocephalus_glaber_female
ENSCHIG00000016375	-	100	96.103	ENSHGLG00000000816	-	99	96.103	Heterocephalus_glaber_female
ENSCHIG00000016375	-	97	96.142	ENSHGLG00100018421	-	100	97.684	Heterocephalus_glaber_male
ENSCHIG00000016375	-	100	97.151	ENSSTOG00000010683	SMARCA5	99	97.151	Ictidomys_tridecemlineatus
ENSCHIG00000016375	-	100	96.293	ENSJJAG00000014965	Smarca5	100	96.293	Jaculus_jaculus
ENSCHIG00000016375	-	95	94.507	ENSLACG00000007091	SMARCA5	97	94.507	Latimeria_chalumnae
ENSCHIG00000016375	-	95	90.835	ENSLOCG00000008966	SMARCA5	98	89.109	Lepisosteus_oculatus
ENSCHIG00000016375	-	100	96.958	ENSLAFG00000007795	SMARCA5	100	96.958	Loxodonta_africana
ENSCHIG00000016375	-	100	97.053	ENSMFAG00000043649	SMARCA5	100	97.053	Macaca_fascicularis
ENSCHIG00000016375	-	100	97.053	ENSMMUG00000000829	SMARCA5	100	97.053	Macaca_mulatta
ENSCHIG00000016375	-	100	97.053	ENSMNEG00000031916	SMARCA5	100	97.053	Macaca_nemestrina
ENSCHIG00000016375	-	100	97.053	ENSMLEG00000042393	SMARCA5	100	97.053	Mandrillus_leucophaeus
ENSCHIG00000016375	-	97	94.935	ENSMGAG00000003517	SMARCA5	100	94.935	Meleagris_gallopavo
ENSCHIG00000016375	-	95	97.859	ENSMAUG00000015902	Smarca5	98	97.784	Mesocricetus_auratus
ENSCHIG00000016375	-	100	97.243	ENSMICG00000003971	SMARCA5	100	97.243	Microcebus_murinus
ENSCHIG00000016375	-	99	95.913	ENSMOCG00000016986	-	99	95.913	Microtus_ochrogaster
ENSCHIG00000016375	-	100	94.502	ENSMODG00000000391	SMARCA5	100	94.502	Monodelphis_domestica
ENSCHIG00000016375	-	100	96.293	ENSMUSG00000031715	Smarca5	100	96.293	Mus_musculus
ENSCHIG00000016375	-	100	96.388	MGP_PahariEiJ_G0022862	Smarca5	100	96.388	Mus_pahari
ENSCHIG00000016375	-	100	97.433	ENSMLUG00000000468	SMARCA5	100	97.433	Myotis_lucifugus
ENSCHIG00000016375	-	100	96.198	ENSNGAG00000000441	Smarca5	100	96.198	Nannospalax_galili
ENSCHIG00000016375	-	100	97.053	ENSNLEG00000005383	SMARCA5	100	97.053	Nomascus_leucogenys
ENSCHIG00000016375	-	94	89.566	ENSMEUG00000001267	SMARCA5	100	89.566	Notamacropus_eugenii
ENSCHIG00000016375	-	86	98.429	ENSOPRG00000014427	SMARCA5	87	98.429	Ochotona_princeps
ENSCHIG00000016375	-	94	97.420	ENSOANG00000013921	SMARCA5	100	97.420	Ornithorhynchus_anatinus
ENSCHIG00000016375	-	94	97.936	ENSOCUG00000013042	SMARCA5	100	97.936	Oryctolagus_cuniculus
ENSCHIG00000016375	-	100	97.243	ENSOGAG00000009702	SMARCA5	100	97.243	Otolemur_garnettii
ENSCHIG00000016375	-	99	98.002	ENSOARG00000010589	SMARCA5	99	98.002	Ovis_aries
ENSCHIG00000016375	-	100	96.768	ENSPPAG00000028523	SMARCA5	100	96.768	Pan_paniscus
ENSCHIG00000016375	-	100	92.205	ENSPPRG00000004925	SMARCA5	100	93.061	Panthera_pardus
ENSCHIG00000016375	-	97	97.921	ENSPTIG00000020959	SMARCA5	97	97.921	Panthera_tigris_altaica
ENSCHIG00000016375	-	100	96.863	ENSPTRG00000016472	SMARCA5	100	96.863	Pan_troglodytes
ENSCHIG00000016375	-	100	97.053	ENSPANG00000001175	SMARCA5	100	97.053	Papio_anubis
ENSCHIG00000016375	-	95	89.447	ENSPKIG00000015699	SMARCA5	98	88.298	Paramormyrops_kingsleyae
ENSCHIG00000016375	-	95	89.468	ENSPKIG00000015885	SMARCA5	100	89.691	Paramormyrops_kingsleyae
ENSCHIG00000016375	-	96	94.483	ENSPSIG00000004177	SMARCA5	100	94.483	Pelodiscus_sinensis
ENSCHIG00000016375	-	94	88.374	ENSPMGG00000012316	SMARCA5	100	88.374	Periophthalmus_magnuspinnatus
ENSCHIG00000016375	-	98	96.071	ENSPEMG00000008060	Smarca5	99	96.071	Peromyscus_maniculatus_bairdii
ENSCHIG00000016375	-	97	68.499	ENSPMAG00000006011	SMARCA5	83	81.977	Petromyzon_marinus
ENSCHIG00000016375	-	62	84.867	ENSPMAG00000008026	SMARCA5	99	84.867	Petromyzon_marinus
ENSCHIG00000016375	-	100	94.418	ENSPCIG00000003926	SMARCA5	100	94.418	Phascolarctos_cinereus
ENSCHIG00000016375	-	100	96.958	ENSPPYG00000015091	SMARCA5	100	96.958	Pongo_abelii
ENSCHIG00000016375	-	87	88.596	ENSPCAG00000014230	SMARCA5	92	88.596	Procavia_capensis
ENSCHIG00000016375	-	100	94.677	ENSPCOG00000026744	SMARCA5	100	94.677	Propithecus_coquereli
ENSCHIG00000016375	-	99	97.241	ENSPVAG00000006482	SMARCA5	100	97.241	Pteropus_vampyrus
ENSCHIG00000016375	-	98	86.569	ENSPNAG00000027824	SMARCA5	97	88.797	Pygocentrus_nattereri
ENSCHIG00000016375	-	96	97.588	ENSRNOG00000018149	Smarca5	100	97.588	Rattus_norvegicus
ENSCHIG00000016375	-	100	96.866	ENSRBIG00000044644	SMARCA5	100	96.866	Rhinopithecus_bieti
ENSCHIG00000016375	-	98	96.709	ENSRROG00000029591	SMARCA5	99	97.586	Rhinopithecus_roxellana
ENSCHIG00000016375	-	100	96.958	ENSSBOG00000036257	SMARCA5	100	96.958	Saimiri_boliviensis_boliviensis
ENSCHIG00000016375	-	95	97.554	ENSSHAG00000008464	SMARCA5	100	97.382	Sarcophilus_harrisii
ENSCHIG00000016375	-	95	89.775	ENSSFOG00015013252	SMARCA5	97	88.744	Scleropages_formosus
ENSCHIG00000016375	-	97	93.948	ENSSPUG00000007604	SMARCA5	97	97.449	Sphenodon_punctatus
ENSCHIG00000016375	-	100	97.243	ENSSSCG00000009047	SMARCA5	100	97.243	Sus_scrofa
ENSCHIG00000016375	-	97	94.345	ENSTGUG00000002408	SMARCA5	100	94.345	Taeniopygia_guttata
ENSCHIG00000016375	-	98	97.481	ENSUAMG00000023495	SMARCA5	99	97.481	Ursus_americanus
ENSCHIG00000016375	-	96	98.006	ENSUMAG00000015324	SMARCA5	97	98.006	Ursus_maritimus
ENSCHIG00000016375	-	100	97.338	ENSVPAG00000008982	SMARCA5	100	97.338	Vicugna_pacos
ENSCHIG00000016375	-	100	97.529	ENSVVUG00000017473	SMARCA5	100	97.529	Vulpes_vulpes
ENSCHIG00000016375	-	93	89.855	ENSXETG00000017566	smarca5	97	89.855	Xenopus_tropicalis