EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000016708 (Gene tree)
Gene ID: 102171798
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 48876 bases
Position: chr12:50435835-50484710
Accession: 102171798
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000016458	RRM_1	PF00076.22	3.5e-32	1	2
ENSCHIP00000016458	RRM_1	PF00076.22	3.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000024265	PSPC1-201	1563	XM_018056523	ENSCHIP00000016458	520 (aa)	XP_017912012	UPI0000582E17

Gene Model

Click here to download ENSCHIG00000016708's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000016708's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000016708	PSPC1	80	53.735	ENSCHIG00000009602	-	90	54.177
ENSCHIG00000016708	PSPC1	91	59.448	ENSCHIG00000000365	-	81	69.501
ENSCHIG00000016708	PSPC1	90	58.159	ENSCHIG00000023097	SFPQ	54	68.564

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000016708	PSPC1	100	95.793	ENSG00000121390	PSPC1	100	95.793	Homo_sapiens
ENSCHIG00000016708	PSPC1	89	70.021	ENSAPOG00000015946	pspc1	96	65.451	Acanthochromis_polyacanthus
ENSCHIG00000016708	PSPC1	100	96.353	ENSAMEG00000017420	PSPC1	100	96.353	Ailuropoda_melanoleuca
ENSCHIG00000016708	PSPC1	99	57.514	ENSACIG00000018695	pspc1	100	55.288	Amphilophus_citrinellus
ENSCHIG00000016708	PSPC1	89	69.520	ENSAOCG00000005279	pspc1	96	65.318	Amphiprion_ocellaris
ENSCHIG00000016708	PSPC1	89	70.638	ENSAPEG00000015927	pspc1	87	69.409	Amphiprion_percula
ENSCHIG00000016708	PSPC1	91	57.732	ENSATEG00000004878	pspc1	96	56.814	Anabas_testudineus
ENSCHIG00000016708	PSPC1	78	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSCHIG00000016708	PSPC1	89	60.300	ENSAPLG00000003643	SFPQ	68	70.056	Anas_platyrhynchos
ENSCHIG00000016708	PSPC1	90	52.917	ENSACAG00000013307	-	56	65.470	Anolis_carolinensis
ENSCHIG00000016708	PSPC1	99	84.411	ENSACAG00000002093	PSPC1	99	84.952	Anolis_carolinensis
ENSCHIG00000016708	PSPC1	100	95.969	ENSANAG00000000059	PSPC1	100	95.969	Aotus_nancymaae
ENSCHIG00000016708	PSPC1	99	57.678	ENSACLG00000027220	pspc1	100	54.972	Astatotilapia_calliptera
ENSCHIG00000016708	PSPC1	91	67.959	ENSAMXG00000036881	pspc1	100	65.441	Astyanax_mexicanus
ENSCHIG00000016708	PSPC1	100	100.000	ENSBTAG00000003934	PSPC1	100	100.000	Bos_taurus
ENSCHIG00000016708	PSPC1	100	95.969	ENSCJAG00000004554	PSPC1	100	95.969	Callithrix_jacchus
ENSCHIG00000016708	PSPC1	100	96.353	ENSCAFG00020002009	PSPC1	100	96.353	Canis_lupus_dingo
ENSCHIG00000016708	PSPC1	77	91.791	ENSTSYG00000032882	PSPC1	93	85.511	Carlito_syrichta
ENSCHIG00000016708	PSPC1	100	96.169	ENSCPOG00000000395	PSPC1	100	96.169	Cavia_porcellus
ENSCHIG00000016708	PSPC1	100	95.969	ENSCCAG00000033498	PSPC1	100	95.969	Cebus_capucinus
ENSCHIG00000016708	PSPC1	100	95.793	ENSCATG00000036434	PSPC1	100	95.793	Cercocebus_atys
ENSCHIG00000016708	PSPC1	89	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSCHIG00000016708	PSPC1	100	89.313	ENSCHOG00000008913	PSPC1	100	90.076	Choloepus_hoffmanni
ENSCHIG00000016708	PSPC1	99	86.832	ENSCPBG00000020859	PSPC1	99	86.882	Chrysemys_picta_bellii
ENSCHIG00000016708	PSPC1	59	58.442	ENSCSAVG00000003533	-	53	61.429	Ciona_savignyi
ENSCHIG00000016708	PSPC1	78	85.432	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSCHIG00000016708	PSPC1	100	95.029	ENSCGRG00001018368	Pspc1	100	95.029	Cricetulus_griseus_chok1gshd
ENSCHIG00000016708	PSPC1	100	95.029	ENSCGRG00000011724	Pspc1	100	95.029	Cricetulus_griseus_crigri
ENSCHIG00000016708	PSPC1	88	66.091	ENSCVAG00000007679	-	86	65.227	Cyprinodon_variegatus
ENSCHIG00000016708	PSPC1	99	66.229	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSCHIG00000016708	PSPC1	100	95.992	ENSDNOG00000011078	PSPC1	100	95.992	Dasypus_novemcinctus
ENSCHIG00000016708	PSPC1	100	92.352	ENSDORG00000016050	Pspc1	100	92.352	Dipodomys_ordii
ENSCHIG00000016708	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSCHIG00000016708	PSPC1	88	56.818	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSCHIG00000016708	PSPC1	57	46.933	ENSEBUG00000010133	pspc1	77	49.492	Eptatretus_burgeri
ENSCHIG00000016708	PSPC1	100	96.545	ENSEASG00005000119	PSPC1	100	96.545	Equus_asinus_asinus
ENSCHIG00000016708	PSPC1	100	96.545	ENSECAG00000017286	PSPC1	100	96.545	Equus_caballus
ENSCHIG00000016708	PSPC1	88	83.699	ENSEEUG00000011288	-	88	83.699	Erinaceus_europaeus
ENSCHIG00000016708	PSPC1	99	65.751	ENSELUG00000003746	pspc1	94	72.589	Esox_lucius
ENSCHIG00000016708	PSPC1	100	96.545	ENSFCAG00000027841	PSPC1	100	96.545	Felis_catus
ENSCHIG00000016708	PSPC1	89	94.624	ENSFALG00000008750	PSPC1	99	87.146	Ficedula_albicollis
ENSCHIG00000016708	PSPC1	100	94.808	ENSFDAG00000002617	PSPC1	100	94.808	Fukomys_damarensis
ENSCHIG00000016708	PSPC1	88	66.595	ENSGMOG00000015074	pspc1	92	63.600	Gadus_morhua
ENSCHIG00000016708	PSPC1	89	94.805	ENSGALG00000017142	PSPC1	99	87.476	Gallus_gallus
ENSCHIG00000016708	PSPC1	62	77.846	ENSGAFG00000006327	pspc1	81	68.702	Gambusia_affinis
ENSCHIG00000016708	PSPC1	88	65.517	ENSGACG00000014901	pspc1	95	71.681	Gasterosteus_aculeatus
ENSCHIG00000016708	PSPC1	99	86.692	ENSGAGG00000019164	PSPC1	99	86.692	Gopherus_agassizii
ENSCHIG00000016708	PSPC1	92	59.375	ENSGAGG00000017325	-	56	67.935	Gopherus_agassizii
ENSCHIG00000016708	PSPC1	100	95.602	ENSGGOG00000003414	PSPC1	100	95.602	Gorilla_gorilla
ENSCHIG00000016708	PSPC1	99	64.981	ENSHBUG00000001139	pspc1	100	64.607	Haplochromis_burtoni
ENSCHIG00000016708	PSPC1	100	95.785	ENSHGLG00000018811	PSPC1	100	95.785	Heterocephalus_glaber_female
ENSCHIG00000016708	PSPC1	67	92.219	ENSHGLG00100007962	PSPC1	100	92.219	Heterocephalus_glaber_male
ENSCHIG00000016708	PSPC1	77	67.633	ENSHCOG00000013251	pspc1	93	65.796	Hippocampus_comes
ENSCHIG00000016708	PSPC1	89	73.885	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSCHIG00000016708	PSPC1	100	94.857	ENSSTOG00000026833	PSPC1	100	95.619	Ictidomys_tridecemlineatus
ENSCHIG00000016708	PSPC1	100	94.264	ENSJJAG00000018334	Pspc1	100	95.220	Jaculus_jaculus
ENSCHIG00000016708	PSPC1	89	55.292	ENSKMAG00000013525	-	96	52.039	Kryptolebias_marmoratus
ENSCHIG00000016708	PSPC1	92	65.669	ENSLBEG00000004474	pspc1	78	70.737	Labrus_bergylta
ENSCHIG00000016708	PSPC1	99	77.256	ENSLACG00000010762	PSPC1	99	78.030	Latimeria_chalumnae
ENSCHIG00000016708	PSPC1	99	77.885	ENSLOCG00000010832	pspc1	99	77.885	Lepisosteus_oculatus
ENSCHIG00000016708	PSPC1	100	95.029	ENSLAFG00000010968	PSPC1	100	95.985	Loxodonta_africana
ENSCHIG00000016708	PSPC1	100	95.985	ENSMFAG00000032728	PSPC1	100	95.985	Macaca_fascicularis
ENSCHIG00000016708	PSPC1	100	95.985	ENSMMUG00000020262	PSPC1	100	95.985	Macaca_mulatta
ENSCHIG00000016708	PSPC1	100	95.985	ENSMNEG00000027401	PSPC1	100	95.985	Macaca_nemestrina
ENSCHIG00000016708	PSPC1	84	98.997	ENSMLEG00000039043	PSPC1	100	98.997	Mandrillus_leucophaeus
ENSCHIG00000016708	PSPC1	91	66.331	ENSMAMG00000004333	pspc1	90	61.491	Mastacembelus_armatus
ENSCHIG00000016708	PSPC1	99	57.678	ENSMZEG00005005726	pspc1	100	54.972	Maylandia_zebra
ENSCHIG00000016708	PSPC1	78	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSCHIG00000016708	PSPC1	88	89.394	ENSMAUG00000021067	Pspc1	99	89.394	Mesocricetus_auratus
ENSCHIG00000016708	PSPC1	100	95.777	ENSMICG00000013970	PSPC1	100	96.367	Microcebus_murinus
ENSCHIG00000016708	PSPC1	100	94.455	ENSMOCG00000006060	Pspc1	100	95.029	Microtus_ochrogaster
ENSCHIG00000016708	PSPC1	93	43.487	ENSMMOG00000004352	pspc1	64	51.275	Mola_mola
ENSCHIG00000016708	PSPC1	93	93.004	ENSMODG00000008029	PSPC1	78	94.033	Monodelphis_domestica
ENSCHIG00000016708	PSPC1	89	69.313	ENSMALG00000008914	pspc1	90	66.806	Monopterus_albus
ENSCHIG00000016708	PSPC1	100	94.275	MGP_CAROLIEiJ_G0019341	Pspc1	100	94.847	Mus_caroli
ENSCHIG00000016708	PSPC1	100	94.466	ENSMUSG00000021938	Pspc1	100	95.038	Mus_musculus
ENSCHIG00000016708	PSPC1	100	94.466	MGP_PahariEiJ_G0030359	Pspc1	100	95.038	Mus_pahari
ENSCHIG00000016708	PSPC1	100	94.466	MGP_SPRETEiJ_G0020232	Pspc1	100	95.038	Mus_spretus
ENSCHIG00000016708	PSPC1	100	96.545	ENSMPUG00000013347	PSPC1	100	96.545	Mustela_putorius_furo
ENSCHIG00000016708	PSPC1	100	95.229	ENSMLUG00000017663	PSPC1	100	95.229	Myotis_lucifugus
ENSCHIG00000016708	PSPC1	100	94.455	ENSNGAG00000011271	Pspc1	100	95.220	Nannospalax_galili
ENSCHIG00000016708	PSPC1	73	65.641	ENSNBRG00000014059	pspc1	92	62.690	Neolamprologus_brichardi
ENSCHIG00000016708	PSPC1	100	96.000	ENSNLEG00000001294	PSPC1	100	96.000	Nomascus_leucogenys
ENSCHIG00000016708	PSPC1	84	89.883	ENSMEUG00000000476	PSPC1	84	91.829	Notamacropus_eugenii
ENSCHIG00000016708	PSPC1	100	84.615	ENSODEG00000007817	-	100	81.061	Octodon_degus
ENSCHIG00000016708	PSPC1	100	84.645	ENSODEG00000019012	-	100	85.795	Octodon_degus
ENSCHIG00000016708	PSPC1	99	64.981	ENSONIG00000012010	pspc1	99	63.889	Oreochromis_niloticus
ENSCHIG00000016708	PSPC1	77	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSCHIG00000016708	PSPC1	99	66.027	ENSOANG00000011381	-	99	65.643	Ornithorhynchus_anatinus
ENSCHIG00000016708	PSPC1	100	95.411	ENSOCUG00000006153	PSPC1	100	95.411	Oryctolagus_cuniculus
ENSCHIG00000016708	PSPC1	89	70.000	ENSORLG00000004232	-	93	62.089	Oryzias_latipes
ENSCHIG00000016708	PSPC1	89	68.723	ENSORLG00020000578	PSPC1	93	65.139	Oryzias_latipes_hni
ENSCHIG00000016708	PSPC1	89	70.426	ENSORLG00015017480	pspc1	88	66.030	Oryzias_latipes_hsok
ENSCHIG00000016708	PSPC1	100	95.985	ENSOGAG00000012643	PSPC1	100	95.985	Otolemur_garnettii
ENSCHIG00000016708	PSPC1	100	92.529	ENSOARG00000014163	PSPC1	100	92.529	Ovis_aries
ENSCHIG00000016708	PSPC1	89	92.241	ENSPPAG00000009836	PSPC1	95	95.906	Pan_paniscus
ENSCHIG00000016708	PSPC1	100	96.545	ENSPPRG00000008833	PSPC1	100	96.545	Panthera_pardus
ENSCHIG00000016708	PSPC1	100	83.077	ENSPTIG00000016917	PSPC1	100	83.077	Panthera_tigris_altaica
ENSCHIG00000016708	PSPC1	93	95.679	ENSPTRG00000005677	PSPC1	99	95.679	Pan_troglodytes
ENSCHIG00000016708	PSPC1	100	95.985	ENSPANG00000001992	PSPC1	100	95.985	Papio_anubis
ENSCHIG00000016708	PSPC1	82	78.588	ENSPKIG00000003578	pspc1	95	70.059	Paramormyrops_kingsleyae
ENSCHIG00000016708	PSPC1	99	86.553	ENSPSIG00000005168	PSPC1	99	87.476	Pelodiscus_sinensis
ENSCHIG00000016708	PSPC1	58	72.093	ENSPMGG00000015135	pspc1	83	72.000	Periophthalmus_magnuspinnatus
ENSCHIG00000016708	PSPC1	100	94.837	ENSPEMG00000015214	Pspc1	100	95.411	Peromyscus_maniculatus_bairdii
ENSCHIG00000016708	PSPC1	57	44.805	ENSPMAG00000004618	pspc1	92	44.805	Petromyzon_marinus
ENSCHIG00000016708	PSPC1	99	93.499	ENSPCIG00000017680	PSPC1	100	94.455	Phascolarctos_cinereus
ENSCHIG00000016708	PSPC1	92	66.935	ENSPFOG00000003362	pspc1	97	65.192	Poecilia_formosa
ENSCHIG00000016708	PSPC1	70	63.757	ENSPLAG00000004407	-	55	59.487	Poecilia_latipinna
ENSCHIG00000016708	PSPC1	99	63.315	ENSPLAG00000011540	pspc1	99	64.045	Poecilia_latipinna
ENSCHIG00000016708	PSPC1	99	63.315	ENSPMEG00000008322	pspc1	99	63.670	Poecilia_mexicana
ENSCHIG00000016708	PSPC1	70	63.926	ENSPMEG00000001025	-	54	59.640	Poecilia_mexicana
ENSCHIG00000016708	PSPC1	99	63.602	ENSPREG00000007786	pspc1	99	63.246	Poecilia_reticulata
ENSCHIG00000016708	PSPC1	100	94.242	ENSPPYG00000005186	PSPC1	100	95.602	Pongo_abelii
ENSCHIG00000016708	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSCHIG00000016708	PSPC1	100	91.587	ENSPCOG00000014364	PSPC1	100	91.587	Propithecus_coquereli
ENSCHIG00000016708	PSPC1	100	92.500	ENSPVAG00000005036	PSPC1	100	93.858	Pteropus_vampyrus
ENSCHIG00000016708	PSPC1	99	57.836	ENSPNYG00000008893	pspc1	100	55.140	Pundamilia_nyererei
ENSCHIG00000016708	PSPC1	99	67.603	ENSPNAG00000016511	pspc1	100	67.790	Pygocentrus_nattereri
ENSCHIG00000016708	PSPC1	100	94.646	ENSRNOG00000020782	Pspc1	100	95.220	Rattus_norvegicus
ENSCHIG00000016708	PSPC1	94	96.715	ENSRBIG00000036057	PSPC1	100	96.715	Rhinopithecus_bieti
ENSCHIG00000016708	PSPC1	100	95.985	ENSRROG00000036334	PSPC1	100	95.985	Rhinopithecus_roxellana
ENSCHIG00000016708	PSPC1	79	88.378	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSCHIG00000016708	PSPC1	100	88.213	ENSSHAG00000004696	PSPC1	100	89.163	Sarcophilus_harrisii
ENSCHIG00000016708	PSPC1	82	79.294	ENSSFOG00015001395	pspc1	89	78.738	Scleropages_formosus
ENSCHIG00000016708	PSPC1	88	66.946	ENSSMAG00000001761	pspc1	86	74.212	Scophthalmus_maximus
ENSCHIG00000016708	PSPC1	89	68.763	ENSSDUG00000010651	pspc1	76	74.186	Seriola_dumerili
ENSCHIG00000016708	PSPC1	88	64.286	ENSSLDG00000004284	pspc1	100	54.982	Seriola_lalandi_dorsalis
ENSCHIG00000016708	PSPC1	100	88.654	ENSSARG00000000888	PSPC1	100	89.101	Sorex_araneus
ENSCHIG00000016708	PSPC1	90	53.878	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSCHIG00000016708	PSPC1	99	75.094	ENSSPUG00000008550	PSPC1	99	75.283	Sphenodon_punctatus
ENSCHIG00000016708	PSPC1	92	67.400	ENSSPAG00000001921	pspc1	95	63.415	Stegastes_partitus
ENSCHIG00000016708	PSPC1	100	98.084	ENSSSCG00000009569	PSPC1	100	98.084	Sus_scrofa
ENSCHIG00000016708	PSPC1	89	94.624	ENSTGUG00000011295	PSPC1	99	94.624	Taeniopygia_guttata
ENSCHIG00000016708	PSPC1	89	62.845	ENSTRUG00000011335	pspc1	87	62.017	Takifugu_rubripes
ENSCHIG00000016708	PSPC1	89	64.807	ENSTNIG00000010358	pspc1	94	60.692	Tetraodon_nigroviridis
ENSCHIG00000016708	PSPC1	100	75.769	ENSTBEG00000002361	PSPC1	100	74.379	Tupaia_belangeri
ENSCHIG00000016708	PSPC1	100	98.269	ENSTTRG00000003343	PSPC1	100	98.269	Tursiops_truncatus
ENSCHIG00000016708	PSPC1	67	94.269	ENSUAMG00000012309	PSPC1	99	95.402	Ursus_americanus
ENSCHIG00000016708	PSPC1	94	96.509	ENSUMAG00000013993	PSPC1	100	96.509	Ursus_maritimus
ENSCHIG00000016708	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSCHIG00000016708	PSPC1	100	96.353	ENSVVUG00000006414	PSPC1	100	96.353	Vulpes_vulpes
ENSCHIG00000016708	PSPC1	73	68.193	ENSXCOG00000017438	pspc1	86	71.585	Xiphophorus_couchianus
ENSCHIG00000016708	PSPC1	73	68.448	ENSXMAG00000007929	pspc1	86	71.858	Xiphophorus_maculatus