EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000016743 (Gene tree)
Gene ID: 102183260
Gene Symbol: POP4
Alias: RPP29
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 10502 bases
Position: chr18:41417221-41427722
Accession: 102183260
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000016525	UPF0086	PF01868.16	6.6e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000024331	POP4-201	2736	XM_005692232	ENSCHIP00000016525	220 (aa)	XP_005692289	UPI00029D7B08

Gene Model

Click here to download ENSCHIG00000016743's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03008	Ribosome biogenesis in eukaryotes	KEGG
chx03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000016743's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000016743	POP4	100	89.091	ENSG00000105171	POP4	100	94.792	Homo_sapiens
ENSCHIG00000016743	POP4	99	89.908	ENSAMEG00000018329	-	99	89.908	Ailuropoda_melanoleuca
ENSCHIG00000016743	POP4	97	78.605	ENSAMEG00000003172	-	97	78.605	Ailuropoda_melanoleuca
ENSCHIG00000016743	POP4	93	63.107	ENSACIG00000008358	pop4	93	64.615	Amphilophus_citrinellus
ENSCHIG00000016743	POP4	91	63.725	ENSAOCG00000010116	pop4	99	62.745	Amphiprion_ocellaris
ENSCHIG00000016743	POP4	90	63.366	ENSAPEG00000002829	pop4	85	62.376	Amphiprion_percula
ENSCHIG00000016743	POP4	94	60.766	ENSATEG00000013028	pop4	94	60.096	Anabas_testudineus
ENSCHIG00000016743	POP4	90	76.142	ENSAPLG00000014051	POP4	98	74.752	Anas_platyrhynchos
ENSCHIG00000016743	POP4	100	87.273	ENSANAG00000020295	POP4	100	87.273	Aotus_nancymaae
ENSCHIG00000016743	POP4	89	63.077	ENSACLG00000000526	pop4	88	63.077	Astatotilapia_calliptera
ENSCHIG00000016743	POP4	100	60.455	ENSAMXG00000002899	pop4	100	60.455	Astyanax_mexicanus
ENSCHIG00000016743	POP4	100	97.273	ENSBTAG00000002223	POP4	100	97.273	Bos_taurus
ENSCHIG00000016743	POP4	100	85.068	ENSCJAG00000046750	POP4	100	87.778	Callithrix_jacchus
ENSCHIG00000016743	POP4	83	92.857	ENSCAFG00000007630	POP4	100	92.857	Canis_familiaris
ENSCHIG00000016743	POP4	100	89.545	ENSTSYG00000003488	POP4	100	89.545	Carlito_syrichta
ENSCHIG00000016743	POP4	99	67.742	ENSCAPG00000011105	POP4	100	67.742	Cavia_aperea
ENSCHIG00000016743	POP4	100	88.182	ENSCPOG00000002992	POP4	100	88.182	Cavia_porcellus
ENSCHIG00000016743	POP4	100	76.364	ENSCCAG00000034244	-	100	76.364	Cebus_capucinus
ENSCHIG00000016743	POP4	100	88.636	ENSCCAG00000020285	-	100	88.636	Cebus_capucinus
ENSCHIG00000016743	POP4	100	90.455	ENSCATG00000036022	POP4	100	96.875	Cercocebus_atys
ENSCHIG00000016743	POP4	100	89.091	ENSCLAG00000013162	POP4	100	89.091	Chinchilla_lanigera
ENSCHIG00000016743	POP4	99	89.908	ENSCSAG00000004868	POP4	100	89.908	Chlorocebus_sabaeus
ENSCHIG00000016743	POP4	98	70.698	ENSCHOG00000002071	POP4	99	70.698	Choloepus_hoffmanni
ENSCHIG00000016743	POP4	100	74.091	ENSCPBG00000016132	POP4	100	74.091	Chrysemys_picta_bellii
ENSCHIG00000016743	POP4	84	33.508	ENSCING00000023871	-	94	32.984	Ciona_intestinalis
ENSCHIG00000016743	POP4	90	91.960	ENSCANG00000005924	POP4	99	91.960	Colobus_angolensis_palliatus
ENSCHIG00000016743	POP4	100	84.091	ENSCGRG00001017185	Pop4	100	84.091	Cricetulus_griseus_chok1gshd
ENSCHIG00000016743	POP4	100	84.091	ENSCGRG00000008155	Pop4	100	84.091	Cricetulus_griseus_crigri
ENSCHIG00000016743	POP4	94	53.365	ENSCSEG00000002946	pop4	94	53.365	Cynoglossus_semilaevis
ENSCHIG00000016743	POP4	93	45.146	ENSCVAG00000018602	POP4	88	44.175	Cyprinodon_variegatus
ENSCHIG00000016743	POP4	88	68.041	ENSDARG00000101472	pop4	88	68.041	Danio_rerio
ENSCHIG00000016743	POP4	100	89.545	ENSDNOG00000047663	POP4	88	89.545	Dasypus_novemcinctus
ENSCHIG00000016743	POP4	78	81.977	ENSDORG00000008577	Pop4	99	82.941	Dipodomys_ordii
ENSCHIG00000016743	POP4	67	38.065	FBgn0035831	CG8038	70	37.931	Drosophila_melanogaster
ENSCHIG00000016743	POP4	99	73.272	ENSETEG00000003607	POP4	100	73.272	Echinops_telfairi
ENSCHIG00000016743	POP4	100	42.986	ENSEBUG00000008575	pop4	100	42.986	Eptatretus_burgeri
ENSCHIG00000016743	POP4	90	47.143	ENSEBUG00000010447	pop4	82	47.143	Eptatretus_burgeri
ENSCHIG00000016743	POP4	100	40.773	ENSEBUG00000004305	pop4	100	40.773	Eptatretus_burgeri
ENSCHIG00000016743	POP4	100	90.385	ENSECAG00000020206	POP4	82	90.385	Equus_caballus
ENSCHIG00000016743	POP4	91	68.000	ENSEEUG00000013109	POP4	100	68.000	Erinaceus_europaeus
ENSCHIG00000016743	POP4	89	65.816	ENSELUG00000019812	pop4	89	65.816	Esox_lucius
ENSCHIG00000016743	POP4	100	91.818	ENSFCAG00000001619	POP4	100	91.818	Felis_catus
ENSCHIG00000016743	POP4	98	71.628	ENSFALG00000000206	POP4	96	71.628	Ficedula_albicollis
ENSCHIG00000016743	POP4	100	90.455	ENSFDAG00000017859	POP4	100	90.455	Fukomys_damarensis
ENSCHIG00000016743	POP4	90	58.000	ENSFHEG00000012745	pop4	90	57.000	Fundulus_heteroclitus
ENSCHIG00000016743	POP4	90	62.312	ENSGMOG00000000335	pop4	96	63.918	Gadus_morhua
ENSCHIG00000016743	POP4	100	70.455	ENSGALG00000041972	POP4	92	70.455	Gallus_gallus
ENSCHIG00000016743	POP4	74	52.727	ENSGAFG00000003571	pop4	91	52.727	Gambusia_affinis
ENSCHIG00000016743	POP4	94	60.287	ENSGACG00000014510	pop4	93	66.279	Gasterosteus_aculeatus
ENSCHIG00000016743	POP4	100	74.545	ENSGAGG00000024544	POP4	79	74.545	Gopherus_agassizii
ENSCHIG00000016743	POP4	99	89.450	ENSGGOG00000038346	POP4	99	89.450	Gorilla_gorilla
ENSCHIG00000016743	POP4	89	63.077	ENSHBUG00000021821	pop4	88	63.077	Haplochromis_burtoni
ENSCHIG00000016743	POP4	99	88.073	ENSHGLG00000015798	POP4	99	88.073	Heterocephalus_glaber_female
ENSCHIG00000016743	POP4	100	87.727	ENSHGLG00100009737	POP4	100	87.727	Heterocephalus_glaber_male
ENSCHIG00000016743	POP4	89	62.626	ENSHCOG00000020937	pop4	88	62.626	Hippocampus_comes
ENSCHIG00000016743	POP4	100	60.909	ENSIPUG00000013652	pop4	100	60.909	Ictalurus_punctatus
ENSCHIG00000016743	POP4	100	90.000	ENSSTOG00000011016	POP4	100	90.000	Ictidomys_tridecemlineatus
ENSCHIG00000016743	POP4	100	90.909	ENSJJAG00000013376	Pop4	100	90.909	Jaculus_jaculus
ENSCHIG00000016743	POP4	94	62.500	ENSKMAG00000012250	pop4	93	61.538	Kryptolebias_marmoratus
ENSCHIG00000016743	POP4	97	55.814	ENSLBEG00000018846	-	96	56.279	Labrus_bergylta
ENSCHIG00000016743	POP4	97	55.814	ENSLBEG00000014139	pop4	96	56.279	Labrus_bergylta
ENSCHIG00000016743	POP4	100	65.000	ENSLACG00000008581	POP4	99	65.000	Latimeria_chalumnae
ENSCHIG00000016743	POP4	100	69.545	ENSLOCG00000005597	pop4	100	69.545	Lepisosteus_oculatus
ENSCHIG00000016743	POP4	99	90.323	ENSLAFG00000000084	POP4	100	89.091	Loxodonta_africana
ENSCHIG00000016743	POP4	100	90.000	ENSMFAG00000029606	POP4	100	90.000	Macaca_fascicularis
ENSCHIG00000016743	POP4	100	87.783	ENSMMUG00000017424	POP4	100	87.783	Macaca_mulatta
ENSCHIG00000016743	POP4	100	87.783	ENSMNEG00000031374	POP4	100	87.783	Macaca_nemestrina
ENSCHIG00000016743	POP4	100	90.455	ENSMLEG00000043454	POP4	100	90.455	Mandrillus_leucophaeus
ENSCHIG00000016743	POP4	85	65.957	ENSMAMG00000011716	pop4	93	61.538	Mastacembelus_armatus
ENSCHIG00000016743	POP4	89	63.077	ENSMZEG00005002360	pop4	88	63.077	Maylandia_zebra
ENSCHIG00000016743	POP4	99	71.233	ENSMGAG00000005337	POP4	98	71.233	Meleagris_gallopavo
ENSCHIG00000016743	POP4	100	85.909	ENSMAUG00000020110	Pop4	100	85.909	Mesocricetus_auratus
ENSCHIG00000016743	POP4	99	87.156	ENSMICG00000035730	POP4	98	87.156	Microcebus_murinus
ENSCHIG00000016743	POP4	94	60.870	ENSMMOG00000015321	pop4	93	61.650	Mola_mola
ENSCHIG00000016743	POP4	98	80.465	ENSMODG00000029406	POP4	93	80.465	Monodelphis_domestica
ENSCHIG00000016743	POP4	95	62.381	ENSMALG00000012571	pop4	95	62.381	Monopterus_albus
ENSCHIG00000016743	POP4	100	83.258	MGP_CAROLIEiJ_G0029600	Pop4	100	84.163	Mus_caroli
ENSCHIG00000016743	POP4	100	83.710	ENSMUSG00000030423	Pop4	100	83.258	Mus_musculus
ENSCHIG00000016743	POP4	100	83.636	MGP_SPRETEiJ_G0030699	Pop4	100	82.727	Mus_spretus
ENSCHIG00000016743	POP4	100	77.828	ENSMPUG00000008063	-	100	77.828	Mustela_putorius_furo
ENSCHIG00000016743	POP4	100	90.000	ENSMPUG00000008041	-	100	90.000	Mustela_putorius_furo
ENSCHIG00000016743	POP4	99	69.406	ENSMLUG00000010774	POP4	99	69.406	Myotis_lucifugus
ENSCHIG00000016743	POP4	57	83.200	ENSMEUG00000003636	-	100	83.200	Notamacropus_eugenii
ENSCHIG00000016743	POP4	91	90.500	ENSOPRG00000004736	POP4	100	90.500	Ochotona_princeps
ENSCHIG00000016743	POP4	99	88.018	ENSODEG00000013025	POP4	100	88.679	Octodon_degus
ENSCHIG00000016743	POP4	89	62.564	ENSONIG00000003458	pop4	87	62.564	Oreochromis_niloticus
ENSCHIG00000016743	POP4	100	88.636	ENSOCUG00000015974	POP4	100	88.636	Oryctolagus_cuniculus
ENSCHIG00000016743	POP4	90	60.804	ENSORLG00000020317	pop4	90	59.799	Oryzias_latipes
ENSCHIG00000016743	POP4	94	59.135	ENSORLG00015011624	pop4	93	58.173	Oryzias_latipes_hsok
ENSCHIG00000016743	POP4	90	62.312	ENSOMEG00000002538	pop4	93	59.615	Oryzias_melastigma
ENSCHIG00000016743	POP4	99	87.671	ENSOGAG00000011168	POP4	99	87.671	Otolemur_garnettii
ENSCHIG00000016743	POP4	100	99.548	ENSOARG00000004041	POP4	100	99.548	Ovis_aries
ENSCHIG00000016743	POP4	100	89.545	ENSPPAG00000040372	POP4	100	89.545	Pan_paniscus
ENSCHIG00000016743	POP4	100	91.818	ENSPPRG00000010502	POP4	100	91.818	Panthera_pardus
ENSCHIG00000016743	POP4	100	91.818	ENSPTIG00000016598	POP4	100	91.818	Panthera_tigris_altaica
ENSCHIG00000016743	POP4	100	89.545	ENSPTRG00000010779	POP4	100	89.545	Pan_troglodytes
ENSCHIG00000016743	POP4	100	90.000	ENSPANG00000008546	POP4	100	90.000	Papio_anubis
ENSCHIG00000016743	POP4	89	69.347	ENSPKIG00000004468	pop4	87	69.347	Paramormyrops_kingsleyae
ENSCHIG00000016743	POP4	100	74.545	ENSPSIG00000015690	POP4	98	79.798	Pelodiscus_sinensis
ENSCHIG00000016743	POP4	92	58.173	ENSPMGG00000008608	pop4	99	57.692	Periophthalmus_magnuspinnatus
ENSCHIG00000016743	POP4	100	84.545	ENSPEMG00000014034	-	96	84.545	Peromyscus_maniculatus_bairdii
ENSCHIG00000016743	POP4	99	72.477	ENSPEMG00000019982	-	100	72.477	Peromyscus_maniculatus_bairdii
ENSCHIG00000016743	POP4	83	56.061	ENSPMAG00000006265	pop4	100	56.061	Petromyzon_marinus
ENSCHIG00000016743	POP4	100	80.909	ENSPCIG00000024738	POP4	95	80.909	Phascolarctos_cinereus
ENSCHIG00000016743	POP4	92	58.173	ENSPFOG00000000925	pop4	94	58.173	Poecilia_formosa
ENSCHIG00000016743	POP4	92	58.173	ENSPLAG00000003161	pop4	94	58.173	Poecilia_latipinna
ENSCHIG00000016743	POP4	92	58.173	ENSPMEG00000002475	pop4	94	58.173	Poecilia_mexicana
ENSCHIG00000016743	POP4	92	59.113	ENSPREG00000022403	pop4	88	59.113	Poecilia_reticulata
ENSCHIG00000016743	POP4	100	90.000	ENSPPYG00000009805	POP4	100	90.000	Pongo_abelii
ENSCHIG00000016743	POP4	99	80.275	ENSPCAG00000007737	POP4	99	80.275	Procavia_capensis
ENSCHIG00000016743	POP4	100	90.909	ENSPCOG00000018055	POP4	100	90.909	Propithecus_coquereli
ENSCHIG00000016743	POP4	100	87.273	ENSPVAG00000006069	POP4	100	87.273	Pteropus_vampyrus
ENSCHIG00000016743	POP4	89	63.590	ENSPNYG00000020038	pop4	88	63.590	Pundamilia_nyererei
ENSCHIG00000016743	POP4	100	63.182	ENSPNAG00000005591	pop4	100	63.182	Pygocentrus_nattereri
ENSCHIG00000016743	POP4	100	85.520	ENSRNOG00000027646	Pop4	100	86.425	Rattus_norvegicus
ENSCHIG00000016743	POP4	80	85.714	ENSRBIG00000044769	POP4	89	88.406	Rhinopithecus_bieti
ENSCHIG00000016743	POP4	100	89.545	ENSRROG00000028903	POP4	100	89.545	Rhinopithecus_roxellana
ENSCHIG00000016743	POP4	57	35.252	YBR257W	-	50	35.252	Saccharomyces_cerevisiae
ENSCHIG00000016743	POP4	100	88.182	ENSSBOG00000032445	POP4	100	88.182	Saimiri_boliviensis_boliviensis
ENSCHIG00000016743	POP4	99	80.734	ENSSHAG00000016888	POP4	99	80.734	Sarcophilus_harrisii
ENSCHIG00000016743	POP4	93	68.293	ENSSFOG00015014556	pop4	91	67.647	Scleropages_formosus
ENSCHIG00000016743	POP4	93	62.559	ENSSMAG00000016611	pop4	99	61.611	Scophthalmus_maximus
ENSCHIG00000016743	POP4	94	61.244	ENSSDUG00000019865	pop4	84	60.577	Seriola_dumerili
ENSCHIG00000016743	POP4	94	61.538	ENSSLDG00000001763	pop4	93	60.577	Seriola_lalandi_dorsalis
ENSCHIG00000016743	POP4	98	90.233	ENSSARG00000004748	POP4	99	90.233	Sorex_araneus
ENSCHIG00000016743	POP4	94	63.462	ENSSPAG00000014364	pop4	93	62.500	Stegastes_partitus
ENSCHIG00000016743	POP4	100	94.091	ENSSSCG00000002854	POP4	100	94.091	Sus_scrofa
ENSCHIG00000016743	POP4	90	76.263	ENSTGUG00000008953	POP4	99	76.263	Taeniopygia_guttata
ENSCHIG00000016743	POP4	92	61.951	ENSTNIG00000006401	pop4	100	60.591	Tetraodon_nigroviridis
ENSCHIG00000016743	POP4	100	88.235	ENSTBEG00000002194	POP4	100	90.498	Tupaia_belangeri
ENSCHIG00000016743	POP4	100	92.727	ENSTTRG00000005882	POP4	100	92.727	Tursiops_truncatus
ENSCHIG00000016743	POP4	100	90.455	ENSUAMG00000003049	-	100	90.455	Ursus_americanus
ENSCHIG00000016743	POP4	100	90.455	ENSUMAG00000007522	-	100	90.455	Ursus_maritimus
ENSCHIG00000016743	POP4	92	91.089	ENSVVUG00000016876	-	71	91.089	Vulpes_vulpes
ENSCHIG00000016743	POP4	98	67.442	ENSXETG00000017598	pop4	98	67.442	Xenopus_tropicalis
ENSCHIG00000016743	POP4	92	58.049	ENSXCOG00000017695	pop4	88	57.561	Xiphophorus_couchianus
ENSCHIG00000016743	POP4	92	58.049	ENSXMAG00000013862	pop4	88	57.561	Xiphophorus_maculatus