EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000017477 (Gene tree)
Gene ID: 102176219
Gene Symbol: SNRPN
Alias: HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN
Full Name: small nuclear ribonucleoprotein polypeptide N
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 16826 bases
Position: chr21:1101330-1118155
Accession: 102176219
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000017778	LSM	PF01423.22	7.5e-20	1	1
ENSCHIP00000017774	LSM	PF01423.22	8.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000025586	SNRPN-201	992	XM_013976773	ENSCHIP00000017774	240 (aa)	XP_013832227	UPI000057E9A0
ENSCHIT00000025590	SNRPN-202	4026	-	ENSCHIP00000017778	230 (aa)	-	UPI000D1934F6

Gene Model

Click here to download ENSCHIG00000017477's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000017477's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000017477	SNRPN	96	91.403	ENSCHIG00000025449	-	99	91.266

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000017477	SNRPN	100	98.750	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
ENSCHIG00000017477	SNRPN	99	99.163	ENSAMEG00000007034	SNRPN	98	99.163	Ailuropoda_melanoleuca
ENSCHIG00000017477	SNRPN	100	98.750	ENSANAG00000034241	SNRPN	100	98.750	Aotus_nancymaae
ENSCHIG00000017477	SNRPN	100	100.000	ENSBTAG00000008251	SNRPN	100	100.000	Bos_taurus
ENSCHIG00000017477	SNRPN	100	98.750	ENSCJAG00000003759	-	100	98.750	Callithrix_jacchus
ENSCHIG00000017477	SNRPN	100	97.391	ENSCJAG00000042622	-	96	97.391	Callithrix_jacchus
ENSCHIG00000017477	SNRPN	100	99.167	ENSCAFG00000010127	SNRPN	100	99.167	Canis_familiaris
ENSCHIG00000017477	SNRPN	100	99.167	ENSCAFG00020024075	SNRPN	100	99.167	Canis_lupus_dingo
ENSCHIG00000017477	SNRPN	100	98.750	ENSTSYG00000005248	SNRPN	100	98.750	Carlito_syrichta
ENSCHIG00000017477	SNRPN	100	98.750	ENSCAPG00000003047	SNRPN	100	98.750	Cavia_aperea
ENSCHIG00000017477	SNRPN	100	98.750	ENSCPOG00000020270	SNRPN	100	98.750	Cavia_porcellus
ENSCHIG00000017477	SNRPN	100	98.750	ENSCCAG00000024231	SNRPN	100	98.750	Cebus_capucinus
ENSCHIG00000017477	SNRPN	100	98.750	ENSCATG00000032518	SNRPN	100	98.750	Cercocebus_atys
ENSCHIG00000017477	SNRPN	100	98.750	ENSCLAG00000011376	SNRPN	100	98.750	Chinchilla_lanigera
ENSCHIG00000017477	SNRPN	100	98.750	ENSCSAG00000006406	SNRPN	100	98.750	Chlorocebus_sabaeus
ENSCHIG00000017477	SNRPN	98	98.291	ENSCHOG00000001846	SNRPN	88	98.291	Choloepus_hoffmanni
ENSCHIG00000017477	SNRPN	100	98.750	ENSCANG00000041156	SNRPN	100	98.750	Colobus_angolensis_palliatus
ENSCHIG00000017477	SNRPN	100	98.333	ENSCGRG00001004136	Snrpn	100	98.333	Cricetulus_griseus_chok1gshd
ENSCHIG00000017477	SNRPN	100	98.333	ENSCGRG00000001621	Snrpn	100	98.333	Cricetulus_griseus_crigri
ENSCHIG00000017477	SNRPN	75	92.486	ENSCVAG00000014193	SNRPN	75	90.710	Cyprinodon_variegatus
ENSCHIG00000017477	SNRPN	99	97.908	ENSDNOG00000037060	SNRPN	98	97.908	Dasypus_novemcinctus
ENSCHIG00000017477	SNRPN	100	99.167	ENSDORG00000004527	Snrpn	100	99.167	Dipodomys_ordii
ENSCHIG00000017477	SNRPN	100	99.167	ENSEASG00005017871	SNRPN	100	99.167	Equus_asinus_asinus
ENSCHIG00000017477	SNRPN	100	99.167	ENSECAG00000018148	SNRPN	100	99.167	Equus_caballus
ENSCHIG00000017477	SNRPN	99	98.745	ENSEEUG00000007440	-	100	98.745	Erinaceus_europaeus
ENSCHIG00000017477	SNRPN	100	99.167	ENSFCAG00000022298	-	100	99.167	Felis_catus
ENSCHIG00000017477	SNRPN	100	99.167	ENSFDAG00000016578	-	100	99.167	Fukomys_damarensis
ENSCHIG00000017477	SNRPN	80	86.339	ENSFDAG00000010528	-	86	86.339	Fukomys_damarensis
ENSCHIG00000017477	SNRPN	79	76.243	ENSGMOG00000018161	SNRPN	93	75.587	Gadus_morhua
ENSCHIG00000017477	SNRPN	93	72.093	ENSGGOG00000024469	-	93	73.659	Gorilla_gorilla
ENSCHIG00000017477	SNRPN	100	98.750	ENSGGOG00000003988	SNRPN	100	98.750	Gorilla_gorilla
ENSCHIG00000017477	SNRPN	93	89.202	ENSHGLG00000019812	-	89	89.671	Heterocephalus_glaber_female
ENSCHIG00000017477	SNRPN	100	84.167	ENSHGLG00000002327	-	95	84.279	Heterocephalus_glaber_female
ENSCHIG00000017477	SNRPN	93	80.465	ENSHGLG00000020936	-	75	81.250	Heterocephalus_glaber_female
ENSCHIG00000017477	SNRPN	100	98.750	ENSHGLG00000011924	SNRPN	100	98.750	Heterocephalus_glaber_female
ENSCHIG00000017477	SNRPN	100	98.750	ENSHGLG00100016559	SNRPN	100	98.750	Heterocephalus_glaber_male
ENSCHIG00000017477	SNRPN	93	89.202	ENSHGLG00100021056	-	89	89.671	Heterocephalus_glaber_male
ENSCHIG00000017477	SNRPN	100	81.667	ENSHGLG00100004881	-	95	82.533	Heterocephalus_glaber_male
ENSCHIG00000017477	SNRPN	100	98.750	ENSSTOG00000001339	SNRPN	100	98.750	Ictidomys_tridecemlineatus
ENSCHIG00000017477	SNRPN	99	99.163	ENSLAFG00000009458	SNRPN	99	99.163	Loxodonta_africana
ENSCHIG00000017477	SNRPN	100	98.750	ENSMFAG00000042235	SNRPN	100	98.750	Macaca_fascicularis
ENSCHIG00000017477	SNRPN	100	98.750	ENSMMUG00000023139	SNURF	100	98.750	Macaca_mulatta
ENSCHIG00000017477	SNRPN	100	98.750	ENSMNEG00000031291	SNRPN	100	98.750	Macaca_nemestrina
ENSCHIG00000017477	SNRPN	100	98.750	ENSMLEG00000038837	SNRPN	100	98.750	Mandrillus_leucophaeus
ENSCHIG00000017477	SNRPN	96	85.000	ENSMGAG00000008696	SNRPN	95	85.088	Meleagris_gallopavo
ENSCHIG00000017477	SNRPN	100	98.750	ENSMAUG00000000051	Snrpn	100	98.750	Mesocricetus_auratus
ENSCHIG00000017477	SNRPN	100	98.750	ENSMICG00000042356	SNRPN	100	98.750	Microcebus_murinus
ENSCHIG00000017477	SNRPN	100	98.750	ENSMOCG00000015350	Snrpn	100	98.750	Microtus_ochrogaster
ENSCHIG00000017477	SNRPN	96	93.213	ENSMODG00000013926	-	95	93.013	Monodelphis_domestica
ENSCHIG00000017477	SNRPN	100	98.750	MGP_CAROLIEiJ_G0029815	Snrpn	100	98.750	Mus_caroli
ENSCHIG00000017477	SNRPN	100	98.750	ENSMUSG00000102252	Snrpn	100	98.750	Mus_musculus
ENSCHIG00000017477	SNRPN	100	98.750	MGP_PahariEiJ_G0013040	Snrpn	100	98.750	Mus_pahari
ENSCHIG00000017477	SNRPN	100	98.750	MGP_SPRETEiJ_G0030918	Snrpn	100	98.750	Mus_spretus
ENSCHIG00000017477	SNRPN	92	50.711	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
ENSCHIG00000017477	SNRPN	100	99.167	ENSMPUG00000014638	-	100	99.167	Mustela_putorius_furo
ENSCHIG00000017477	SNRPN	89	61.275	ENSMLUG00000025849	-	78	61.677	Myotis_lucifugus
ENSCHIG00000017477	SNRPN	99	99.582	ENSMLUG00000023361	-	98	99.582	Myotis_lucifugus
ENSCHIG00000017477	SNRPN	95	62.281	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
ENSCHIG00000017477	SNRPN	100	98.750	ENSNGAG00000000181	Snrpn	100	98.750	Nannospalax_galili
ENSCHIG00000017477	SNRPN	100	82.500	ENSNLEG00000001376	SNRPN	99	82.500	Nomascus_leucogenys
ENSCHIG00000017477	SNRPN	100	99.167	ENSODEG00000013478	-	100	99.167	Octodon_degus
ENSCHIG00000017477	SNRPN	98	82.051	ENSODEG00000016065	-	87	83.092	Octodon_degus
ENSCHIG00000017477	SNRPN	100	98.261	ENSODEG00000019708	-	97	98.261	Octodon_degus
ENSCHIG00000017477	SNRPN	100	98.750	ENSODEG00000020110	-	100	98.750	Octodon_degus
ENSCHIG00000017477	SNRPN	100	98.340	ENSOCUG00000003532	-	100	98.340	Oryctolagus_cuniculus
ENSCHIG00000017477	SNRPN	79	90.608	ENSORLG00020007490	SNRPN	75	90.710	Oryzias_latipes_hni
ENSCHIG00000017477	SNRPN	79	90.608	ENSORLG00015003332	SNRPN	75	90.710	Oryzias_latipes_hsok
ENSCHIG00000017477	SNRPN	79	91.160	ENSOMEG00000002066	SNRPN	75	91.257	Oryzias_melastigma
ENSCHIG00000017477	SNRPN	100	98.750	ENSOGAG00000007392	SNRPN	100	98.750	Otolemur_garnettii
ENSCHIG00000017477	SNRPN	100	100.000	ENSOARG00000009080	SNRPN	100	100.000	Ovis_aries
ENSCHIG00000017477	SNRPN	96	70.721	ENSPPAG00000034049	-	86	70.813	Pan_paniscus
ENSCHIG00000017477	SNRPN	100	98.750	ENSPPAG00000027650	SNRPN	100	98.750	Pan_paniscus
ENSCHIG00000017477	SNRPN	100	99.167	ENSPPRG00000019878	-	100	99.167	Panthera_pardus
ENSCHIG00000017477	SNRPN	89	63.415	ENSPPRG00000006957	-	80	69.277	Panthera_pardus
ENSCHIG00000017477	SNRPN	100	98.750	ENSPTIG00000004537	SNRPN	100	98.750	Panthera_tigris_altaica
ENSCHIG00000017477	SNRPN	100	98.750	ENSPTRG00000006826	SNRPN	100	98.750	Pan_troglodytes
ENSCHIG00000017477	SNRPN	96	71.171	ENSPTRG00000052400	-	86	71.292	Pan_troglodytes
ENSCHIG00000017477	SNRPN	100	98.750	ENSPANG00000020142	SNRPN	100	98.750	Papio_anubis
ENSCHIG00000017477	SNRPN	95	94.298	ENSPEMG00000020979	-	95	94.298	Peromyscus_maniculatus_bairdii
ENSCHIG00000017477	SNRPN	100	98.750	ENSPEMG00000012911	-	100	98.750	Peromyscus_maniculatus_bairdii
ENSCHIG00000017477	SNRPN	96	85.520	ENSPEMG00000013920	-	95	86.463	Peromyscus_maniculatus_bairdii
ENSCHIG00000017477	SNRPN	96	94.091	ENSPCIG00000004699	-	73	93.860	Phascolarctos_cinereus
ENSCHIG00000017477	SNRPN	75	92.486	ENSPMEG00000020674	SNRPN	75	91.257	Poecilia_mexicana
ENSCHIG00000017477	SNRPN	100	98.750	ENSPPYG00000006269	SNURF	100	98.750	Pongo_abelii
ENSCHIG00000017477	SNRPN	100	98.750	ENSPCOG00000014231	SNRPN	100	98.750	Propithecus_coquereli
ENSCHIG00000017477	SNRPN	100	98.750	ENSRNOG00000059764	Snrpn	100	98.750	Rattus_norvegicus
ENSCHIG00000017477	SNRPN	100	98.750	ENSRBIG00000041765	SNRPN	100	98.750	Rhinopithecus_bieti
ENSCHIG00000017477	SNRPN	100	98.750	ENSRROG00000035157	SNRPN	100	98.750	Rhinopithecus_roxellana
ENSCHIG00000017477	SNRPN	100	98.750	ENSSBOG00000000110	-	100	98.750	Saimiri_boliviensis_boliviensis
ENSCHIG00000017477	SNRPN	100	97.917	ENSSBOG00000024929	-	100	97.917	Saimiri_boliviensis_boliviensis
ENSCHIG00000017477	SNRPN	96	93.665	ENSSHAG00000010257	-	94	93.450	Sarcophilus_harrisii
ENSCHIG00000017477	SNRPN	99	78.243	ENSSARG00000000072	SNRPN	100	78.243	Sorex_araneus
ENSCHIG00000017477	SNRPN	100	99.583	ENSSSCG00000028124	SNRPN	100	99.583	Sus_scrofa
ENSCHIG00000017477	SNRPN	100	100.000	ENSTTRG00000010966	SNRPN	89	100.000	Tursiops_truncatus
ENSCHIG00000017477	SNRPN	97	99.107	ENSUAMG00000016284	SNRPN	78	99.107	Ursus_americanus
ENSCHIG00000017477	SNRPN	100	99.167	ENSUMAG00000025589	SNRPN	100	99.167	Ursus_maritimus
ENSCHIG00000017477	SNRPN	100	99.130	ENSVVUG00000017971	SNRPN	94	99.130	Vulpes_vulpes