EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000018143 (Gene tree)
Gene ID: 102171479
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 196888 bases
Position: chr25:13223466-13420353
Accession: 102171479
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000018892	R3H	PF01424.22	5e-05	1	1
ENSCHIP00000018892	RNA_bind	PF08675.11	9.6e-33	1	1
ENSCHIP00000018892	CAF1	PF04857.20	3.8e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000026707	PARN-201	6391	XM_005697515	ENSCHIP00000018892	638 (aa)	XP_005697572	UPI0003AF640E

Gene Model

Click here to download ENSCHIG00000018143's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000018143's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000018143	PARN	100	94.366	ENSG00000140694	PARN	100	98.305	Homo_sapiens
ENSCHIG00000018143	PARN	100	94.523	ENSAMEG00000011208	PARN	100	94.523	Ailuropoda_melanoleuca
ENSCHIG00000018143	PARN	83	75.560	ENSACIG00000000619	parn	83	75.560	Amphilophus_citrinellus
ENSCHIG00000018143	PARN	83	78.090	ENSAOCG00000003465	parn	78	78.090	Amphiprion_ocellaris
ENSCHIG00000018143	PARN	74	77.801	ENSAPEG00000010661	parn	91	77.801	Amphiprion_percula
ENSCHIG00000018143	PARN	90	74.399	ENSATEG00000004661	parn	83	74.399	Anabas_testudineus
ENSCHIG00000018143	PARN	99	83.412	ENSAPLG00000013914	PARN	99	83.412	Anas_platyrhynchos
ENSCHIG00000018143	PARN	90	83.966	ENSACAG00000004973	PARN	100	77.642	Anolis_carolinensis
ENSCHIG00000018143	PARN	100	92.645	ENSANAG00000031516	PARN	100	98.305	Aotus_nancymaae
ENSCHIG00000018143	PARN	91	74.315	ENSACLG00000004742	parn	84	74.315	Astatotilapia_calliptera
ENSCHIG00000018143	PARN	90	73.997	ENSAMXG00000012390	parn	92	71.478	Astyanax_mexicanus
ENSCHIG00000018143	PARN	100	96.395	ENSBTAG00000018097	PARN	100	99.307	Bos_taurus
ENSCHIG00000018143	PARN	100	93.271	ENSCJAG00000015866	PARN	100	98.305	Callithrix_jacchus
ENSCHIG00000018143	PARN	100	94.828	ENSCAFG00000018795	PARN	100	94.828	Canis_familiaris
ENSCHIG00000018143	PARN	100	94.828	ENSCAFG00020024126	PARN	100	94.828	Canis_lupus_dingo
ENSCHIG00000018143	PARN	73	62.578	ENSCAPG00000007984	PARN	78	62.578	Cavia_aperea
ENSCHIG00000018143	PARN	100	90.125	ENSCPOG00000002263	PARN	100	90.125	Cavia_porcellus
ENSCHIG00000018143	PARN	100	93.427	ENSCCAG00000030367	PARN	100	98.305	Cebus_capucinus
ENSCHIG00000018143	PARN	52	35.862	ENSCATG00000033196	PNLDC1	70	36.111	Cercocebus_atys
ENSCHIG00000018143	PARN	100	83.568	ENSCATG00000041368	PARN	100	98.305	Cercocebus_atys
ENSCHIG00000018143	PARN	100	90.439	ENSCLAG00000015406	PARN	99	90.439	Chinchilla_lanigera
ENSCHIG00000018143	PARN	100	94.210	ENSCSAG00000008142	PARN	100	94.210	Chlorocebus_sabaeus
ENSCHIG00000018143	PARN	99	76.862	ENSCHOG00000007014	PARN	100	76.862	Choloepus_hoffmanni
ENSCHIG00000018143	PARN	88	84.848	ENSCPBG00000006609	PARN	97	85.102	Chrysemys_picta_bellii
ENSCHIG00000018143	PARN	80	43.902	ENSCING00000010142	-	99	43.902	Ciona_intestinalis
ENSCHIG00000018143	PARN	100	82.362	ENSCANG00000028849	-	100	98.305	Colobus_angolensis_palliatus
ENSCHIG00000018143	PARN	100	85.179	ENSCGRG00001012096	Parn	100	85.179	Cricetulus_griseus_chok1gshd
ENSCHIG00000018143	PARN	100	85.179	ENSCGRG00000004939	Parn	100	85.179	Cricetulus_griseus_crigri
ENSCHIG00000018143	PARN	95	68.943	ENSCSEG00000002064	parn	100	63.348	Cynoglossus_semilaevis
ENSCHIG00000018143	PARN	91	72.991	ENSCVAG00000014848	parn	83	72.991	Cyprinodon_variegatus
ENSCHIG00000018143	PARN	90	70.364	ENSDARG00000102634	parn	100	59.259	Danio_rerio
ENSCHIG00000018143	PARN	100	93.574	ENSDNOG00000000833	PARN	98	95.683	Dasypus_novemcinctus
ENSCHIG00000018143	PARN	74	94.297	ENSETEG00000014828	-	78	94.297	Echinops_telfairi
ENSCHIG00000018143	PARN	100	95.298	ENSEASG00005011400	PARN	100	95.298	Equus_asinus_asinus
ENSCHIG00000018143	PARN	100	95.141	ENSECAG00000017792	PARN	100	95.141	Equus_caballus
ENSCHIG00000018143	PARN	86	84.615	ENSEEUG00000010370	PARN	86	84.615	Erinaceus_europaeus
ENSCHIG00000018143	PARN	95	69.854	ENSELUG00000013139	parn	77	71.189	Esox_lucius
ENSCHIG00000018143	PARN	100	95.141	ENSFCAG00000044961	PARN	100	98.305	Felis_catus
ENSCHIG00000018143	PARN	99	82.726	ENSFALG00000003911	PARN	98	82.726	Ficedula_albicollis
ENSCHIG00000018143	PARN	58	31.053	ENSFALG00000012081	PNLDC1	70	31.053	Ficedula_albicollis
ENSCHIG00000018143	PARN	100	90.439	ENSFDAG00000009234	PARN	100	90.439	Fukomys_damarensis
ENSCHIG00000018143	PARN	92	66.167	ENSFHEG00000013738	parn	92	76.271	Fundulus_heteroclitus
ENSCHIG00000018143	PARN	86	74.773	ENSGMOG00000003231	parn	99	74.773	Gadus_morhua
ENSCHIG00000018143	PARN	100	81.191	ENSGALG00000003091	PARN	100	81.191	Gallus_gallus
ENSCHIG00000018143	PARN	90	73.288	ENSGAFG00000011061	parn	84	72.727	Gambusia_affinis
ENSCHIG00000018143	PARN	100	67.547	ENSGACG00000019501	parn	100	67.547	Gasterosteus_aculeatus
ENSCHIG00000018143	PARN	55	76.487	ENSGAGG00000023281	PARN	83	79.448	Gopherus_agassizii
ENSCHIG00000018143	PARN	97	94.525	ENSGGOG00000025224	PARN	100	98.305	Gorilla_gorilla
ENSCHIG00000018143	PARN	91	74.227	ENSHBUG00000017906	parn	92	75.226	Haplochromis_burtoni
ENSCHIG00000018143	PARN	100	90.282	ENSHGLG00000010886	PARN	100	90.282	Heterocephalus_glaber_female
ENSCHIG00000018143	PARN	100	90.282	ENSHGLG00100014659	PARN	100	90.282	Heterocephalus_glaber_male
ENSCHIG00000018143	PARN	87	70.736	ENSHCOG00000008683	parn	95	70.736	Hippocampus_comes
ENSCHIG00000018143	PARN	90	62.414	ENSIPUG00000012401	parn	84	62.414	Ictalurus_punctatus
ENSCHIG00000018143	PARN	100	92.006	ENSSTOG00000007519	PARN	100	92.006	Ictidomys_tridecemlineatus
ENSCHIG00000018143	PARN	100	88.558	ENSJJAG00000023049	Parn	100	88.558	Jaculus_jaculus
ENSCHIG00000018143	PARN	91	73.630	ENSKMAG00000009462	parn	83	73.630	Kryptolebias_marmoratus
ENSCHIG00000018143	PARN	90	72.308	ENSLBEG00000009167	parn	89	72.308	Labrus_bergylta
ENSCHIG00000018143	PARN	79	78.571	ENSLACG00000004207	PARN	100	77.123	Latimeria_chalumnae
ENSCHIG00000018143	PARN	92	75.000	ENSLOCG00000000715	parn	85	75.000	Lepisosteus_oculatus
ENSCHIG00000018143	PARN	100	93.260	ENSLAFG00000015036	PARN	100	93.260	Loxodonta_africana
ENSCHIG00000018143	PARN	100	89.219	ENSMFAG00000044852	PARN	100	98.305	Macaca_fascicularis
ENSCHIG00000018143	PARN	100	93.897	ENSMMUG00000018849	PARN	100	98.305	Macaca_mulatta
ENSCHIG00000018143	PARN	100	94.053	ENSMNEG00000045108	PARN	100	98.305	Macaca_nemestrina
ENSCHIG00000018143	PARN	100	93.897	ENSMLEG00000031743	PARN	100	98.305	Mandrillus_leucophaeus
ENSCHIG00000018143	PARN	83	77.612	ENSMAMG00000006939	parn	78	77.612	Mastacembelus_armatus
ENSCHIG00000018143	PARN	91	74.227	ENSMZEG00005013590	parn	95	73.509	Maylandia_zebra
ENSCHIG00000018143	PARN	95	81.250	ENSMGAG00000001004	PARN	95	81.250	Meleagris_gallopavo
ENSCHIG00000018143	PARN	100	79.507	ENSMAUG00000008025	Parn	100	79.507	Mesocricetus_auratus
ENSCHIG00000018143	PARN	100	94.044	ENSMICG00000016053	PARN	100	100.000	Microcebus_murinus
ENSCHIG00000018143	PARN	77	91.093	ENSMOCG00000022211	Parn	100	91.093	Microtus_ochrogaster
ENSCHIG00000018143	PARN	100	66.355	ENSMMOG00000011333	parn	87	75.888	Mola_mola
ENSCHIG00000018143	PARN	77	94.153	ENSMODG00000004915	PARN	99	94.153	Monodelphis_domestica
ENSCHIG00000018143	PARN	85	77.132	ENSMALG00000019426	parn	93	77.132	Monopterus_albus
ENSCHIG00000018143	PARN	100	86.050	MGP_CAROLIEiJ_G0020466	Parn	100	86.050	Mus_caroli
ENSCHIG00000018143	PARN	100	85.893	ENSMUSG00000022685	Parn	100	93.902	Mus_musculus
ENSCHIG00000018143	PARN	100	85.893	MGP_PahariEiJ_G0016172	Parn	100	85.893	Mus_pahari
ENSCHIG00000018143	PARN	100	85.893	MGP_SPRETEiJ_G0021361	Parn	100	85.893	Mus_spretus
ENSCHIG00000018143	PARN	100	94.828	ENSMPUG00000014464	PARN	100	94.828	Mustela_putorius_furo
ENSCHIG00000018143	PARN	77	95.142	ENSMLUG00000005414	PARN	100	95.142	Myotis_lucifugus
ENSCHIG00000018143	PARN	90	72.165	ENSNBRG00000006805	parn	98	72.165	Neolamprologus_brichardi
ENSCHIG00000018143	PARN	100	94.053	ENSNLEG00000010241	PARN	100	98.305	Nomascus_leucogenys
ENSCHIG00000018143	PARN	99	62.124	ENSMEUG00000008178	-	100	62.124	Notamacropus_eugenii
ENSCHIG00000018143	PARN	99	85.895	ENSOPRG00000012187	PARN	100	85.895	Ochotona_princeps
ENSCHIG00000018143	PARN	100	81.903	ENSODEG00000001617	PARN	100	81.903	Octodon_degus
ENSCHIG00000018143	PARN	100	69.124	ENSONIG00000000151	parn	100	69.124	Oreochromis_niloticus
ENSCHIG00000018143	PARN	59	83.158	ENSOANG00000020155	-	97	83.421	Ornithorhynchus_anatinus
ENSCHIG00000018143	PARN	99	91.024	ENSOCUG00000000322	PARN	100	91.024	Oryctolagus_cuniculus
ENSCHIG00000018143	PARN	91	73.116	ENSORLG00020010313	parn	85	73.116	Oryzias_latipes_hni
ENSCHIG00000018143	PARN	91	72.945	ENSORLG00015000300	parn	85	72.945	Oryzias_latipes_hsok
ENSCHIG00000018143	PARN	92	72.373	ENSOMEG00000019555	parn	97	66.968	Oryzias_melastigma
ENSCHIG00000018143	PARN	77	93.535	ENSOGAG00000014626	PARN	100	93.535	Otolemur_garnettii
ENSCHIG00000018143	PARN	77	99.798	ENSOARG00000007574	PARN	100	99.798	Ovis_aries
ENSCHIG00000018143	PARN	100	94.053	ENSPPAG00000031438	PARN	100	98.305	Pan_paniscus
ENSCHIG00000018143	PARN	100	94.984	ENSPPRG00000018583	PARN	100	98.305	Panthera_pardus
ENSCHIG00000018143	PARN	100	95.141	ENSPTIG00000012135	PARN	100	98.305	Panthera_tigris_altaica
ENSCHIG00000018143	PARN	100	94.053	ENSPTRG00000007792	PARN	100	98.305	Pan_troglodytes
ENSCHIG00000018143	PARN	100	90.923	ENSPANG00000020099	PARN	100	98.305	Papio_anubis
ENSCHIG00000018143	PARN	91	73.921	ENSPKIG00000022807	parn	91	69.558	Paramormyrops_kingsleyae
ENSCHIG00000018143	PARN	99	83.835	ENSPSIG00000014804	PARN	100	83.882	Pelodiscus_sinensis
ENSCHIG00000018143	PARN	80	76.848	ENSPMGG00000014431	parn	74	75.327	Periophthalmus_magnuspinnatus
ENSCHIG00000018143	PARN	100	83.699	ENSPEMG00000018439	Parn	100	83.699	Peromyscus_maniculatus_bairdii
ENSCHIG00000018143	PARN	81	67.946	ENSPMAG00000003956	parn	98	68.605	Petromyzon_marinus
ENSCHIG00000018143	PARN	66	86.761	ENSPCIG00000001259	PARN	91	93.220	Phascolarctos_cinereus
ENSCHIG00000018143	PARN	90	73.540	ENSPFOG00000012823	parn	84	72.635	Poecilia_formosa
ENSCHIG00000018143	PARN	90	73.711	ENSPLAG00000006395	parn	84	72.804	Poecilia_latipinna
ENSCHIG00000018143	PARN	90	73.711	ENSPMEG00000007711	parn	84	72.973	Poecilia_mexicana
ENSCHIG00000018143	PARN	90	73.368	ENSPREG00000000147	parn	84	72.635	Poecilia_reticulata
ENSCHIG00000018143	PARN	100	93.604	ENSPPYG00000007123	PARN	100	93.604	Pongo_abelii
ENSCHIG00000018143	PARN	95	83.140	ENSPCAG00000001741	PARN	100	83.140	Procavia_capensis
ENSCHIG00000018143	PARN	100	91.379	ENSPCOG00000019292	PARN	100	100.000	Propithecus_coquereli
ENSCHIG00000018143	PARN	99	91.442	ENSPVAG00000002547	PARN	100	91.442	Pteropus_vampyrus
ENSCHIG00000018143	PARN	94	72.323	ENSPNYG00000006835	parn	95	70.928	Pundamilia_nyererei
ENSCHIG00000018143	PARN	83	74.573	ENSPNAG00000018905	parn	84	74.573	Pygocentrus_nattereri
ENSCHIG00000018143	PARN	100	83.384	ENSRNOG00000002912	Parn	98	86.869	Rattus_norvegicus
ENSCHIG00000018143	PARN	52	90.390	ENSRBIG00000018726	PARN	100	90.390	Rhinopithecus_bieti
ENSCHIG00000018143	PARN	52	90.390	ENSRROG00000011162	-	100	90.390	Rhinopithecus_roxellana
ENSCHIG00000018143	PARN	100	91.862	ENSSBOG00000034726	PARN	100	98.305	Saimiri_boliviensis_boliviensis
ENSCHIG00000018143	PARN	66	93.301	ENSSHAG00000008493	PARN	94	93.301	Sarcophilus_harrisii
ENSCHIG00000018143	PARN	96	71.382	ENSSFOG00015014165	parn	88	77.589	Scleropages_formosus
ENSCHIG00000018143	PARN	83	76.306	ENSSMAG00000000685	parn	87	71.402	Scophthalmus_maximus
ENSCHIG00000018143	PARN	90	72.603	ENSSDUG00000014555	parn	83	72.603	Seriola_dumerili
ENSCHIG00000018143	PARN	91	81.174	ENSSARG00000014339	PARN	100	81.174	Sorex_araneus
ENSCHIG00000018143	PARN	100	84.326	ENSSPUG00000007719	PARN	100	84.326	Sphenodon_punctatus
ENSCHIG00000018143	PARN	91	73.684	ENSSPAG00000007095	parn	86	74.157	Stegastes_partitus
ENSCHIG00000018143	PARN	100	94.671	ENSSSCG00000007878	PARN	89	94.671	Sus_scrofa
ENSCHIG00000018143	PARN	99	82.306	ENSTGUG00000004971	PARN	99	82.306	Taeniopygia_guttata
ENSCHIG00000018143	PARN	55	31.198	ENSTGUG00000011418	PNLDC1	68	31.198	Taeniopygia_guttata
ENSCHIG00000018143	PARN	100	68.266	ENSTNIG00000008252	parn	100	68.421	Tetraodon_nigroviridis
ENSCHIG00000018143	PARN	91	79.102	ENSTBEG00000010407	PARN	100	79.102	Tupaia_belangeri
ENSCHIG00000018143	PARN	99	92.076	ENSTTRG00000002843	PARN	100	92.076	Tursiops_truncatus
ENSCHIG00000018143	PARN	68	84.174	ENSUAMG00000008283	PARN	90	84.174	Ursus_americanus
ENSCHIG00000018143	PARN	100	94.984	ENSUMAG00000004527	PARN	100	94.984	Ursus_maritimus
ENSCHIG00000018143	PARN	96	91.694	ENSVPAG00000008968	PARN	100	91.694	Vicugna_pacos
ENSCHIG00000018143	PARN	100	95.298	ENSVVUG00000019509	PARN	100	95.298	Vulpes_vulpes
ENSCHIG00000018143	PARN	100	74.688	ENSXETG00000010994	parn	100	83.080	Xenopus_tropicalis
ENSCHIG00000018143	PARN	90	69.640	ENSXCOG00000015990	parn	96	69.140	Xiphophorus_couchianus
ENSCHIG00000018143	PARN	92	72.727	ENSXMAG00000014783	parn	84	72.727	Xiphophorus_maculatus