EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000018204 (Gene tree)
Gene ID: 102190609
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 85476 bases
Position: chr11:48350715-48436190
Accession: 102190609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000019133	RNA_pol_Rpb1_5	PF04998.17	2.4e-103	1	1
ENSCHIP00000019140	RNA_pol_Rpb1_5	PF04998.17	2.4e-103	1	1
ENSCHIP00000019147	RNA_pol_Rpb1_5	PF04998.17	1.2e-68	1	1
ENSCHIP00000019147	RNA_pol_Rpb1_4	PF05000.17	7.9e-26	1	1
ENSCHIP00000019140	RNA_pol_Rpb1_4	PF05000.17	8.8e-26	1	1
ENSCHIP00000019133	RNA_pol_Rpb1_4	PF05000.17	8.9e-26	1	1
ENSCHIP00000019147	RNA_pol_Rpb1_2	PF00623.20	1.9e-70	1	1
ENSCHIP00000019140	RNA_pol_Rpb1_2	PF00623.20	2.1e-70	1	1
ENSCHIP00000019133	RNA_pol_Rpb1_2	PF00623.20	2.2e-70	1	1
ENSCHIP00000019140	RNA_pol_Rpb1_3	PF04983.18	3.8e-36	1	1
ENSCHIP00000019133	RNA_pol_Rpb1_3	PF04983.18	3.8e-36	1	1
ENSCHIP00000019147	RNA_pol_Rpb1_3	PF04983.18	4e-36	1	1
ENSCHIP00000019140	RNA_pol_Rpb1_1	PF04997.12	2.5e-21	1	1
ENSCHIP00000019133	RNA_pol_Rpb1_1	PF04997.12	9e-21	1	1
ENSCHIP00000019147	RNA_pol_Rpb1_1	PF04997.12	1.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000026948	POLR1A-201	5112	XM_018055368	ENSCHIP00000019133	1703 (aa)	XP_017910857	UPI000D18F881
ENSCHIT00000026962	POLR1A-203	4692	-	ENSCHIP00000019147	1563 (aa)	-	UPI000D190FF9
ENSCHIT00000026955	POLR1A-202	5106	-	ENSCHIP00000019140	1701 (aa)	-	UPI000D197D0C

Gene Model

Click here to download ENSCHIG00000018204's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000018204's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000018204	POLR1A	66	31.124	ENSCHIG00000000352	POLR3A	74	32.129
ENSCHIG00000018204	POLR1A	67	34.545	ENSCHIG00000027173	-	56	34.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000018204	POLR1A	99	89.126	ENSG00000068654	POLR1A	100	88.123	Homo_sapiens
ENSCHIG00000018204	POLR1A	76	67.761	ENSAPOG00000017945	polr1a	99	67.761	Acanthochromis_polyacanthus
ENSCHIG00000018204	POLR1A	99	90.997	ENSAMEG00000005807	POLR1A	100	92.623	Ailuropoda_melanoleuca
ENSCHIG00000018204	POLR1A	96	67.571	ENSACIG00000022147	polr1a	100	67.571	Amphilophus_citrinellus
ENSCHIG00000018204	POLR1A	100	65.718	ENSAOCG00000017336	polr1a	100	68.417	Amphiprion_ocellaris
ENSCHIG00000018204	POLR1A	94	72.535	ENSAPEG00000016105	polr1a	98	72.535	Amphiprion_percula
ENSCHIG00000018204	POLR1A	100	65.736	ENSATEG00000016773	polr1a	100	65.738	Anabas_testudineus
ENSCHIG00000018204	POLR1A	85	71.739	ENSAPLG00000013871	POLR1A	99	72.041	Anas_platyrhynchos
ENSCHIG00000018204	POLR1A	99	69.499	ENSACAG00000012141	POLR1A	99	69.441	Anolis_carolinensis
ENSCHIG00000018204	POLR1A	99	88.148	ENSANAG00000033927	POLR1A	100	86.957	Aotus_nancymaae
ENSCHIG00000018204	POLR1A	100	62.354	ENSACLG00000020541	polr1a	100	62.653	Astatotilapia_calliptera
ENSCHIG00000018204	POLR1A	99	96.956	ENSBTAG00000006481	POLR1A	100	94.777	Bos_taurus
ENSCHIG00000018204	POLR1A	99	38.626	WBGene00012999	rpoa-1	98	38.523	Caenorhabditis_elegans
ENSCHIG00000018204	POLR1A	99	87.508	ENSCJAG00000019547	POLR1A	100	86.443	Callithrix_jacchus
ENSCHIG00000018204	POLR1A	99	90.415	ENSCAFG00000007613	POLR1A	100	89.559	Canis_familiaris
ENSCHIG00000018204	POLR1A	100	89.211	ENSCAFG00020014752	POLR1A	100	89.675	Canis_lupus_dingo
ENSCHIG00000018204	POLR1A	99	86.788	ENSTSYG00000002761	POLR1A	100	85.938	Carlito_syrichta
ENSCHIG00000018204	POLR1A	97	82.645	ENSCAPG00000010132	POLR1A	100	82.765	Cavia_aperea
ENSCHIG00000018204	POLR1A	100	87.362	ENSCPOG00000012350	POLR1A	100	87.478	Cavia_porcellus
ENSCHIG00000018204	POLR1A	99	88.091	ENSCCAG00000019839	POLR1A	100	86.964	Cebus_capucinus
ENSCHIG00000018204	POLR1A	100	88.239	ENSCATG00000029786	POLR1A	100	88.297	Cercocebus_atys
ENSCHIG00000018204	POLR1A	100	87.616	ENSCLAG00000005187	POLR1A	100	87.674	Chinchilla_lanigera
ENSCHIG00000018204	POLR1A	99	89.126	ENSCSAG00000016251	POLR1A	100	88.355	Chlorocebus_sabaeus
ENSCHIG00000018204	POLR1A	53	95.294	ENSCHOG00000003766	-	84	95.294	Choloepus_hoffmanni
ENSCHIG00000018204	POLR1A	99	74.444	ENSCPBG00000001115	POLR1A	99	74.444	Chrysemys_picta_bellii
ENSCHIG00000018204	POLR1A	99	47.232	ENSCSAVG00000007184	-	91	55.955	Ciona_savignyi
ENSCHIG00000018204	POLR1A	100	85.698	ENSCANG00000031785	POLR1A	100	85.756	Colobus_angolensis_palliatus
ENSCHIG00000018204	POLR1A	100	82.024	ENSCGRG00001006651	Polr1a	100	82.480	Cricetulus_griseus_chok1gshd
ENSCHIG00000018204	POLR1A	59	84.990	ENSCGRG00000010834	Polr1a	100	85.756	Cricetulus_griseus_crigri
ENSCHIG00000018204	POLR1A	100	61.952	ENSCSEG00000020190	polr1a	100	62.295	Cynoglossus_semilaevis
ENSCHIG00000018204	POLR1A	100	63.910	ENSCVAG00000020941	polr1a	100	64.220	Cyprinodon_variegatus
ENSCHIG00000018204	POLR1A	100	67.017	ENSDARG00000098375	polr1a	100	67.192	Danio_rerio
ENSCHIG00000018204	POLR1A	99	83.765	ENSDNOG00000010829	POLR1A	100	81.580	Dasypus_novemcinctus
ENSCHIG00000018204	POLR1A	100	86.508	ENSDORG00000008298	Polr1a	100	86.732	Dipodomys_ordii
ENSCHIG00000018204	POLR1A	87	44.883	FBgn0019938	RpI1	99	43.333	Drosophila_melanogaster
ENSCHIG00000018204	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSCHIG00000018204	POLR1A	82	67.442	ENSEBUG00000005667	-	99	47.576	Eptatretus_burgeri
ENSCHIG00000018204	POLR1A	99	91.920	ENSEASG00005001625	POLR1A	100	90.324	Equus_asinus_asinus
ENSCHIG00000018204	POLR1A	99	91.791	ENSECAG00000036306	-	100	93.802	Equus_caballus
ENSCHIG00000018204	POLR1A	99	91.791	ENSECAG00000030510	-	100	93.802	Equus_caballus
ENSCHIG00000018204	POLR1A	99	91.791	ENSECAG00000010092	POLR1A	100	93.802	Equus_caballus
ENSCHIG00000018204	POLR1A	81	95.745	ENSEEUG00000000676	POLR1A	81	95.556	Erinaceus_europaeus
ENSCHIG00000018204	POLR1A	100	66.608	ENSELUG00000012769	polr1a	99	66.997	Esox_lucius
ENSCHIG00000018204	POLR1A	100	89.791	ENSFCAG00000008966	POLR1A	100	89.907	Felis_catus
ENSCHIG00000018204	POLR1A	99	70.505	ENSFALG00000010082	POLR1A	99	70.951	Ficedula_albicollis
ENSCHIG00000018204	POLR1A	100	87.311	ENSFDAG00000013726	POLR1A	100	87.078	Fukomys_damarensis
ENSCHIG00000018204	POLR1A	100	61.665	ENSFHEG00000005996	polr1a	100	62.083	Fundulus_heteroclitus
ENSCHIG00000018204	POLR1A	100	59.778	ENSGMOG00000002230	polr1a	100	59.977	Gadus_morhua
ENSCHIG00000018204	POLR1A	99	70.122	ENSGALG00000038160	-	99	70.244	Gallus_gallus
ENSCHIG00000018204	POLR1A	100	64.016	ENSGAFG00000015266	polr1a	100	63.878	Gambusia_affinis
ENSCHIG00000018204	POLR1A	100	63.908	ENSGACG00000018791	polr1a	100	64.249	Gasterosteus_aculeatus
ENSCHIG00000018204	POLR1A	89	75.049	ENSGAGG00000004984	-	96	81.795	Gopherus_agassizii
ENSCHIG00000018204	POLR1A	100	88.007	ENSGGOG00000001788	POLR1A	100	88.065	Gorilla_gorilla
ENSCHIG00000018204	POLR1A	90	65.079	ENSHBUG00000020021	polr1a	99	65.283	Haplochromis_burtoni
ENSCHIG00000018204	POLR1A	100	87.704	ENSHGLG00000006334	POLR1A	100	87.879	Heterocephalus_glaber_female
ENSCHIG00000018204	POLR1A	100	87.515	ENSHGLG00100006614	POLR1A	100	87.689	Heterocephalus_glaber_male
ENSCHIG00000018204	POLR1A	100	62.262	ENSHCOG00000003345	polr1a	100	62.885	Hippocampus_comes
ENSCHIG00000018204	POLR1A	100	66.064	ENSIPUG00000013174	polr1a	100	66.103	Ictalurus_punctatus
ENSCHIG00000018204	POLR1A	100	86.281	ENSSTOG00000012580	POLR1A	100	86.504	Ictidomys_tridecemlineatus
ENSCHIG00000018204	POLR1A	100	86.171	ENSJJAG00000013113	Polr1a	100	86.461	Jaculus_jaculus
ENSCHIG00000018204	POLR1A	100	65.773	ENSKMAG00000007399	polr1a	100	65.773	Kryptolebias_marmoratus
ENSCHIG00000018204	POLR1A	94	68.336	ENSLBEG00000015401	polr1a	99	68.632	Labrus_bergylta
ENSCHIG00000018204	POLR1A	58	76.522	ENSLACG00000003218	polr1a	100	76.739	Latimeria_chalumnae
ENSCHIG00000018204	POLR1A	100	70.646	ENSLOCG00000010881	polr1a	100	70.821	Lepisosteus_oculatus
ENSCHIG00000018204	POLR1A	100	87.937	ENSLAFG00000014948	POLR1A	100	87.937	Loxodonta_africana
ENSCHIG00000018204	POLR1A	100	88.297	ENSMFAG00000046097	POLR1A	100	88.355	Macaca_fascicularis
ENSCHIG00000018204	POLR1A	100	88.297	ENSMMUG00000015815	POLR1A	100	88.355	Macaca_mulatta
ENSCHIG00000018204	POLR1A	100	88.297	ENSMNEG00000043313	POLR1A	100	88.355	Macaca_nemestrina
ENSCHIG00000018204	POLR1A	100	87.601	ENSMLEG00000042428	POLR1A	100	87.659	Mandrillus_leucophaeus
ENSCHIG00000018204	POLR1A	100	66.123	ENSMAMG00000016565	polr1a	100	66.375	Mastacembelus_armatus
ENSCHIG00000018204	POLR1A	100	65.734	ENSMZEG00005004915	polr1a	100	66.027	Maylandia_zebra
ENSCHIG00000018204	POLR1A	99	69.231	ENSMGAG00000013111	POLR1A	99	69.347	Meleagris_gallopavo
ENSCHIG00000018204	POLR1A	92	86.595	ENSMAUG00000008497	Polr1a	100	87.166	Mesocricetus_auratus
ENSCHIG00000018204	POLR1A	99	89.385	ENSMICG00000000757	POLR1A	100	87.956	Microcebus_murinus
ENSCHIG00000018204	POLR1A	100	86.430	ENSMOCG00000000122	Polr1a	100	86.838	Microtus_ochrogaster
ENSCHIG00000018204	POLR1A	100	64.678	ENSMMOG00000010216	polr1a	100	65.015	Mola_mola
ENSCHIG00000018204	POLR1A	100	75.548	ENSMODG00000009335	POLR1A	100	75.433	Monodelphis_domestica
ENSCHIG00000018204	POLR1A	100	64.713	ENSMALG00000013363	polr1a	100	65.043	Monopterus_albus
ENSCHIG00000018204	POLR1A	100	85.274	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.556	Mus_caroli
ENSCHIG00000018204	POLR1A	100	85.448	ENSMUSG00000049553	Polr1a	100	85.847	Mus_musculus
ENSCHIG00000018204	POLR1A	100	86.189	MGP_PahariEiJ_G0022230	Polr1a	100	86.480	Mus_pahari
ENSCHIG00000018204	POLR1A	100	84.057	MGP_SPRETEiJ_G0029499	Polr1a	100	84.343	Mus_spretus
ENSCHIG00000018204	POLR1A	99	90.609	ENSMPUG00000009135	POLR1A	100	89.443	Mustela_putorius_furo
ENSCHIG00000018204	POLR1A	100	87.898	ENSMLUG00000015723	POLR1A	100	88.188	Myotis_lucifugus
ENSCHIG00000018204	POLR1A	100	86.620	ENSNGAG00000017907	Polr1a	100	87.136	Nannospalax_galili
ENSCHIG00000018204	POLR1A	100	65.738	ENSNBRG00000000519	polr1a	100	66.143	Neolamprologus_brichardi
ENSCHIG00000018204	POLR1A	99	88.129	ENSNLEG00000002264	POLR1A	100	86.736	Nomascus_leucogenys
ENSCHIG00000018204	POLR1A	76	91.339	ENSMEUG00000011665	-	76	91.339	Notamacropus_eugenii
ENSCHIG00000018204	POLR1A	99	81.812	ENSOPRG00000008269	POLR1A	100	81.475	Ochotona_princeps
ENSCHIG00000018204	POLR1A	100	87.544	ENSODEG00000003542	POLR1A	100	87.602	Octodon_degus
ENSCHIG00000018204	POLR1A	100	65.987	ENSONIG00000015895	polr1a	100	66.182	Oreochromis_niloticus
ENSCHIG00000018204	POLR1A	100	87.907	ENSOCUG00000010138	POLR1A	100	87.965	Oryctolagus_cuniculus
ENSCHIG00000018204	POLR1A	100	64.829	ENSORLG00000008753	polr1a	99	64.846	Oryzias_latipes
ENSCHIG00000018204	POLR1A	100	63.552	ENSORLG00020020726	polr1a	99	63.610	Oryzias_latipes_hni
ENSCHIG00000018204	POLR1A	96	73.404	ENSORLG00015016071	polr1a	99	73.333	Oryzias_latipes_hsok
ENSCHIG00000018204	POLR1A	99	88.342	ENSOGAG00000004031	POLR1A	100	87.370	Otolemur_garnettii
ENSCHIG00000018204	POLR1A	99	98.836	ENSOARG00000020601	POLR1A	100	96.296	Ovis_aries
ENSCHIG00000018204	POLR1A	100	87.949	ENSPPAG00000042450	POLR1A	100	88.007	Pan_paniscus
ENSCHIG00000018204	POLR1A	100	90.081	ENSPPRG00000006702	POLR1A	100	90.139	Panthera_pardus
ENSCHIG00000018204	POLR1A	100	89.538	ENSPTIG00000018783	POLR1A	100	89.595	Panthera_tigris_altaica
ENSCHIG00000018204	POLR1A	99	88.997	ENSPTRG00000012147	POLR1A	100	88.065	Pan_troglodytes
ENSCHIG00000018204	POLR1A	100	88.123	ENSPANG00000025908	POLR1A	100	88.181	Papio_anubis
ENSCHIG00000018204	POLR1A	94	74.306	ENSPKIG00000005468	polr1a	99	74.306	Paramormyrops_kingsleyae
ENSCHIG00000018204	POLR1A	62	71.601	ENSPSIG00000009321	-	99	71.881	Pelodiscus_sinensis
ENSCHIG00000018204	POLR1A	60	68.663	ENSPMGG00000009718	polr1a	95	68.663	Periophthalmus_magnuspinnatus
ENSCHIG00000018204	POLR1A	100	87.194	ENSPEMG00000022224	Polr1a	100	87.631	Peromyscus_maniculatus_bairdii
ENSCHIG00000018204	POLR1A	99	78.535	ENSPCIG00000004222	POLR1A	99	78.690	Phascolarctos_cinereus
ENSCHIG00000018204	POLR1A	100	64.165	ENSPFOG00000005025	polr1a	100	64.477	Poecilia_formosa
ENSCHIG00000018204	POLR1A	100	64.028	ENSPLAG00000021389	polr1a	100	64.539	Poecilia_latipinna
ENSCHIG00000018204	POLR1A	100	62.297	ENSPMEG00000006463	polr1a	100	62.514	Poecilia_mexicana
ENSCHIG00000018204	POLR1A	100	63.942	ENSPREG00000002389	polr1a	100	64.348	Poecilia_reticulata
ENSCHIG00000018204	POLR1A	100	87.717	ENSPPYG00000012217	POLR1A	100	87.775	Pongo_abelii
ENSCHIG00000018204	POLR1A	89	100.000	ENSPCAG00000011582	POLR1A	88	100.000	Procavia_capensis
ENSCHIG00000018204	POLR1A	99	89.385	ENSPCOG00000026987	POLR1A	100	88.072	Propithecus_coquereli
ENSCHIG00000018204	POLR1A	95	88.129	ENSPVAG00000012674	POLR1A	95	87.543	Pteropus_vampyrus
ENSCHIG00000018204	POLR1A	100	65.734	ENSPNYG00000000026	polr1a	100	66.027	Pundamilia_nyererei
ENSCHIG00000018204	POLR1A	100	66.356	ENSPNAG00000019223	polr1a	99	68.672	Pygocentrus_nattereri
ENSCHIG00000018204	POLR1A	100	86.430	ENSRNOG00000009545	Polr1a	100	86.954	Rattus_norvegicus
ENSCHIG00000018204	POLR1A	100	87.717	ENSRBIG00000028335	POLR1A	100	87.775	Rhinopithecus_bieti
ENSCHIG00000018204	POLR1A	100	87.659	ENSRROG00000031473	POLR1A	100	87.717	Rhinopithecus_roxellana
ENSCHIG00000018204	POLR1A	99	37.052	YOR341W	RPA190	99	37.358	Saccharomyces_cerevisiae
ENSCHIG00000018204	POLR1A	100	86.732	ENSSBOG00000030262	POLR1A	100	86.790	Saimiri_boliviensis_boliviensis
ENSCHIG00000018204	POLR1A	100	72.601	ENSSHAG00000014739	POLR1A	100	72.775	Sarcophilus_harrisii
ENSCHIG00000018204	POLR1A	100	67.503	ENSSFOG00015019716	polr1a	100	67.853	Scleropages_formosus
ENSCHIG00000018204	POLR1A	100	65.950	ENSSMAG00000014342	polr1a	100	66.066	Scophthalmus_maximus
ENSCHIG00000018204	POLR1A	100	66.802	ENSSDUG00000014631	polr1a	100	67.072	Seriola_dumerili
ENSCHIG00000018204	POLR1A	100	64.890	ENSSLDG00000024095	polr1a	100	65.104	Seriola_lalandi_dorsalis
ENSCHIG00000018204	POLR1A	76	94.681	ENSSARG00000003136	-	76	94.681	Sorex_araneus
ENSCHIG00000018204	POLR1A	94	80.571	ENSSPUG00000004215	POLR1A	97	80.571	Sphenodon_punctatus
ENSCHIG00000018204	POLR1A	72	72.562	ENSSPAG00000016341	polr1a	96	72.562	Stegastes_partitus
ENSCHIG00000018204	POLR1A	91	93.343	ENSSSCG00000008226	POLR1A	99	93.324	Sus_scrofa
ENSCHIG00000018204	POLR1A	99	69.959	ENSTGUG00000010704	POLR1A	100	70.213	Taeniopygia_guttata
ENSCHIG00000018204	POLR1A	100	63.395	ENSTRUG00000002210	polr1a	99	64.023	Takifugu_rubripes
ENSCHIG00000018204	POLR1A	100	60.290	ENSTNIG00000010116	polr1a	100	60.290	Tetraodon_nigroviridis
ENSCHIG00000018204	POLR1A	74	95.575	ENSTBEG00000008646	POLR1A	70	97.436	Tupaia_belangeri
ENSCHIG00000018204	POLR1A	100	87.631	ENSTTRG00000008597	POLR1A	100	87.863	Tursiops_truncatus
ENSCHIG00000018204	POLR1A	68	89.398	ENSUAMG00000012158	-	94	89.425	Ursus_americanus
ENSCHIG00000018204	POLR1A	100	89.199	ENSUMAG00000006700	POLR1A	100	89.217	Ursus_maritimus
ENSCHIG00000018204	POLR1A	99	90.026	ENSVVUG00000001245	POLR1A	100	89.211	Vulpes_vulpes
ENSCHIG00000018204	POLR1A	100	67.321	ENSXETG00000001952	polr1a	100	69.678	Xenopus_tropicalis
ENSCHIG00000018204	POLR1A	100	64.542	ENSXMAG00000004032	polr1a	100	64.484	Xiphophorus_maculatus