EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000018642 (Gene tree)
Gene ID: 102189060
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 18086 bases
Position: chr17:1901807-1919892
Accession: 102189060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000019748	PRP21_like_P	PF12230.8	1e-51	1	1
ENSCHIP00000019732	PRP21_like_P	PF12230.8	1e-51	1	1
ENSCHIP00000019753	PRP21_like_P	PF12230.8	1.1e-51	1	1
ENSCHIP00000019732	Surp	PF01805.20	7.8e-46	1	2
ENSCHIP00000019732	Surp	PF01805.20	7.8e-46	2	2
ENSCHIP00000019748	Surp	PF01805.20	8e-46	1	2
ENSCHIP00000019748	Surp	PF01805.20	8e-46	2	2
ENSCHIP00000019753	Surp	PF01805.20	8.4e-46	1	2
ENSCHIP00000019753	Surp	PF01805.20	8.4e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000027570	SF3A1-203	2427	-	ENSCHIP00000019753	808 (aa)	-	UPI000D192BB5
ENSCHIT00000027565	SF3A1-202	2364	-	ENSCHIP00000019748	787 (aa)	-	UPI000D191538
ENSCHIT00000027549	SF3A1-201	2382	XM_018060984	ENSCHIP00000019732	793 (aa)	XP_017916473	UPI0005FBD2B2

Gene Model

Click here to download ENSCHIG00000018642's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000018642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000018642	SF3A1	100	98.739	ENSG00000099995	SF3A1	100	98.739	Homo_sapiens
ENSCHIG00000018642	SF3A1	100	83.648	ENSAPOG00000020465	sf3a1	99	85.038	Acanthochromis_polyacanthus
ENSCHIG00000018642	SF3A1	100	98.742	ENSAMEG00000007737	SF3A1	100	98.742	Ailuropoda_melanoleuca
ENSCHIG00000018642	SF3A1	100	84.403	ENSACIG00000020672	sf3a1	99	85.038	Amphilophus_citrinellus
ENSCHIG00000018642	SF3A1	100	83.375	ENSAOCG00000003060	sf3a1	99	85.038	Amphiprion_ocellaris
ENSCHIG00000018642	SF3A1	100	83.500	ENSAPEG00000010735	sf3a1	99	85.166	Amphiprion_percula
ENSCHIG00000018642	SF3A1	96	86.068	ENSATEG00000021201	sf3a1	98	85.347	Anabas_testudineus
ENSCHIG00000018642	SF3A1	95	94.055	ENSAPLG00000009057	SF3A1	99	93.161	Anas_platyrhynchos
ENSCHIG00000018642	SF3A1	100	86.084	ENSACAG00000009415	SF3A1	100	87.438	Anolis_carolinensis
ENSCHIG00000018642	SF3A1	100	98.865	ENSANAG00000032045	SF3A1	100	98.865	Aotus_nancymaae
ENSCHIG00000018642	SF3A1	100	84.481	ENSACLG00000012622	sf3a1	99	85.659	Astatotilapia_calliptera
ENSCHIG00000018642	SF3A1	99	83.186	ENSAMXG00000005382	sf3a1	99	84.041	Astyanax_mexicanus
ENSCHIG00000018642	SF3A1	100	99.874	ENSBTAG00000003390	SF3A1	100	99.874	Bos_taurus
ENSCHIG00000018642	SF3A1	84	43.447	WBGene00004188	prp-21	94	43.613	Caenorhabditis_elegans
ENSCHIG00000018642	SF3A1	100	98.991	ENSCJAG00000010370	SF3A1	100	98.991	Callithrix_jacchus
ENSCHIG00000018642	SF3A1	100	99.369	ENSCAFG00000012559	SF3A1	100	99.369	Canis_familiaris
ENSCHIG00000018642	SF3A1	100	99.369	ENSCAFG00020000838	SF3A1	100	99.369	Canis_lupus_dingo
ENSCHIG00000018642	SF3A1	100	99.243	ENSTSYG00000004739	SF3A1	100	99.243	Carlito_syrichta
ENSCHIG00000018642	SF3A1	94	81.442	ENSCAPG00000015414	SF3A1	98	81.442	Cavia_aperea
ENSCHIG00000018642	SF3A1	100	99.117	ENSCPOG00000014589	SF3A1	100	99.117	Cavia_porcellus
ENSCHIG00000018642	SF3A1	100	98.865	ENSCCAG00000032006	SF3A1	100	98.865	Cebus_capucinus
ENSCHIG00000018642	SF3A1	100	99.117	ENSCATG00000029241	SF3A1	100	99.117	Cercocebus_atys
ENSCHIG00000018642	SF3A1	100	98.487	ENSCLAG00000006508	SF3A1	100	98.487	Chinchilla_lanigera
ENSCHIG00000018642	SF3A1	100	98.991	ENSCSAG00000009470	SF3A1	100	98.991	Chlorocebus_sabaeus
ENSCHIG00000018642	SF3A1	61	99.083	ENSCHOG00000005201	SF3A1	69	99.083	Choloepus_hoffmanni
ENSCHIG00000018642	SF3A1	100	91.058	ENSCPBG00000007595	SF3A1	100	91.184	Chrysemys_picta_bellii
ENSCHIG00000018642	SF3A1	94	52.381	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSCHIG00000018642	SF3A1	96	51.484	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSCHIG00000018642	SF3A1	100	98.991	ENSCANG00000033564	SF3A1	100	98.991	Colobus_angolensis_palliatus
ENSCHIG00000018642	SF3A1	100	98.487	ENSCGRG00001008933	Sf3a1	100	98.487	Cricetulus_griseus_chok1gshd
ENSCHIG00000018642	SF3A1	100	98.487	ENSCGRG00000006127	Sf3a1	100	98.487	Cricetulus_griseus_crigri
ENSCHIG00000018642	SF3A1	99	82.234	ENSCSEG00000010792	sf3a1	99	82.308	Cynoglossus_semilaevis
ENSCHIG00000018642	SF3A1	100	83.145	ENSCVAG00000004560	sf3a1	98	84.375	Cyprinodon_variegatus
ENSCHIG00000018642	SF3A1	100	82.286	ENSDARG00000041887	sf3a1	97	84.615	Danio_rerio
ENSCHIG00000018642	SF3A1	100	98.994	ENSDNOG00000010629	SF3A1	100	98.994	Dasypus_novemcinctus
ENSCHIG00000018642	SF3A1	100	99.117	ENSDORG00000005613	Sf3a1	100	99.117	Dipodomys_ordii
ENSCHIG00000018642	SF3A1	79	61.466	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSCHIG00000018642	SF3A1	89	95.726	ENSETEG00000017194	SF3A1	100	95.726	Echinops_telfairi
ENSCHIG00000018642	SF3A1	100	65.294	ENSEBUG00000001285	sf3a1	96	67.407	Eptatretus_burgeri
ENSCHIG00000018642	SF3A1	100	99.496	ENSEASG00005010254	SF3A1	100	99.496	Equus_asinus_asinus
ENSCHIG00000018642	SF3A1	100	99.496	ENSECAG00000023962	SF3A1	100	99.496	Equus_caballus
ENSCHIG00000018642	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSCHIG00000018642	SF3A1	100	82.456	ENSELUG00000022578	sf3a1	98	82.821	Esox_lucius
ENSCHIG00000018642	SF3A1	100	99.369	ENSFCAG00000011932	SF3A1	100	99.369	Felis_catus
ENSCHIG00000018642	SF3A1	95	93.122	ENSFALG00000006944	SF3A1	100	91.814	Ficedula_albicollis
ENSCHIG00000018642	SF3A1	100	98.865	ENSFDAG00000009560	SF3A1	100	98.865	Fukomys_damarensis
ENSCHIG00000018642	SF3A1	100	84.277	ENSFHEG00000010866	sf3a1	98	85.547	Fundulus_heteroclitus
ENSCHIG00000018642	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	99	80.485	Gadus_morhua
ENSCHIG00000018642	SF3A1	95	94.048	ENSGALG00000007937	SF3A1	100	92.317	Gallus_gallus
ENSCHIG00000018642	SF3A1	100	83.270	ENSGAFG00000009111	sf3a1	97	84.967	Gambusia_affinis
ENSCHIG00000018642	SF3A1	100	82.494	ENSGACG00000011893	sf3a1	97	83.770	Gasterosteus_aculeatus
ENSCHIG00000018642	SF3A1	96	91.196	ENSGAGG00000000762	SF3A1	99	91.350	Gopherus_agassizii
ENSCHIG00000018642	SF3A1	100	98.739	ENSGGOG00000012631	SF3A1	100	98.739	Gorilla_gorilla
ENSCHIG00000018642	SF3A1	100	84.481	ENSHBUG00000015795	sf3a1	99	85.659	Haplochromis_burtoni
ENSCHIG00000018642	SF3A1	100	99.117	ENSHGLG00000007907	SF3A1	100	99.117	Heterocephalus_glaber_female
ENSCHIG00000018642	SF3A1	100	99.117	ENSHGLG00100013799	SF3A1	100	99.117	Heterocephalus_glaber_male
ENSCHIG00000018642	SF3A1	100	80.377	ENSHCOG00000015423	sf3a1	99	80.645	Hippocampus_comes
ENSCHIG00000018642	SF3A1	96	82.422	ENSIPUG00000002470	sf3a1	98	82.682	Ictalurus_punctatus
ENSCHIG00000018642	SF3A1	100	99.243	ENSSTOG00000013892	SF3A1	100	99.243	Ictidomys_tridecemlineatus
ENSCHIG00000018642	SF3A1	100	98.866	ENSJJAG00000022566	Sf3a1	100	98.866	Jaculus_jaculus
ENSCHIG00000018642	SF3A1	100	82.893	ENSKMAG00000002400	sf3a1	98	84.896	Kryptolebias_marmoratus
ENSCHIG00000018642	SF3A1	100	82.642	ENSLBEG00000022974	sf3a1	99	83.355	Labrus_bergylta
ENSCHIG00000018642	SF3A1	100	87.202	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSCHIG00000018642	SF3A1	100	85.338	ENSLOCG00000008251	sf3a1	97	87.143	Lepisosteus_oculatus
ENSCHIG00000018642	SF3A1	98	62.166	ENSLAFG00000026032	-	98	62.166	Loxodonta_africana
ENSCHIG00000018642	SF3A1	100	98.739	ENSLAFG00000000448	SF3A1	100	98.739	Loxodonta_africana
ENSCHIG00000018642	SF3A1	100	98.865	ENSMFAG00000031979	SF3A1	100	98.865	Macaca_fascicularis
ENSCHIG00000018642	SF3A1	100	98.865	ENSMMUG00000005547	SF3A1	100	98.865	Macaca_mulatta
ENSCHIG00000018642	SF3A1	100	98.739	ENSMNEG00000037229	SF3A1	100	98.739	Macaca_nemestrina
ENSCHIG00000018642	SF3A1	100	98.991	ENSMLEG00000041908	SF3A1	100	98.991	Mandrillus_leucophaeus
ENSCHIG00000018642	SF3A1	97	85.899	ENSMAMG00000006460	sf3a1	97	86.028	Mastacembelus_armatus
ENSCHIG00000018642	SF3A1	100	84.481	ENSMZEG00005009633	sf3a1	99	85.659	Maylandia_zebra
ENSCHIG00000018642	SF3A1	95	94.048	ENSMGAG00000001330	SF3A1	99	93.152	Meleagris_gallopavo
ENSCHIG00000018642	SF3A1	92	95.082	ENSMAUG00000020317	Sf3a1	94	95.082	Mesocricetus_auratus
ENSCHIG00000018642	SF3A1	100	98.865	ENSMICG00000010038	SF3A1	100	98.865	Microcebus_murinus
ENSCHIG00000018642	SF3A1	100	98.613	ENSMOCG00000008438	Sf3a1	100	98.613	Microtus_ochrogaster
ENSCHIG00000018642	SF3A1	100	82.129	ENSMMOG00000015588	sf3a1	98	82.879	Mola_mola
ENSCHIG00000018642	SF3A1	100	98.108	ENSMODG00000009270	SF3A1	100	98.108	Monodelphis_domestica
ENSCHIG00000018642	SF3A1	100	84.635	ENSMALG00000000148	sf3a1	99	86.240	Monopterus_albus
ENSCHIG00000018642	SF3A1	100	98.108	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.108	Mus_caroli
ENSCHIG00000018642	SF3A1	100	98.108	ENSMUSG00000002129	Sf3a1	100	98.108	Mus_musculus
ENSCHIG00000018642	SF3A1	100	97.982	MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	Mus_pahari
ENSCHIG00000018642	SF3A1	100	98.108	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.108	Mus_spretus
ENSCHIG00000018642	SF3A1	100	99.117	ENSMPUG00000013144	SF3A1	100	99.117	Mustela_putorius_furo
ENSCHIG00000018642	SF3A1	100	99.243	ENSMLUG00000002139	SF3A1	100	99.243	Myotis_lucifugus
ENSCHIG00000018642	SF3A1	100	98.865	ENSNGAG00000016977	Sf3a1	100	98.865	Nannospalax_galili
ENSCHIG00000018642	SF3A1	100	83.895	ENSNBRG00000016642	sf3a1	96	87.088	Neolamprologus_brichardi
ENSCHIG00000018642	SF3A1	100	98.991	ENSNLEG00000003686	SF3A1	100	98.991	Nomascus_leucogenys
ENSCHIG00000018642	SF3A1	96	88.026	ENSMEUG00000008741	SF3A1	100	88.026	Notamacropus_eugenii
ENSCHIG00000018642	SF3A1	100	98.235	ENSOPRG00000016636	SF3A1	100	98.235	Ochotona_princeps
ENSCHIG00000018642	SF3A1	100	98.739	ENSODEG00000002571	SF3A1	100	98.739	Octodon_degus
ENSCHIG00000018642	SF3A1	100	84.355	ENSONIG00000010848	sf3a1	99	85.038	Oreochromis_niloticus
ENSCHIG00000018642	SF3A1	100	98.865	ENSOCUG00000007633	SF3A1	100	98.865	Oryctolagus_cuniculus
ENSCHIG00000018642	SF3A1	96	82.021	ENSORLG00000013050	sf3a1	99	83.755	Oryzias_latipes
ENSCHIG00000018642	SF3A1	96	82.808	ENSORLG00020003236	sf3a1	95	83.888	Oryzias_latipes_hni
ENSCHIG00000018642	SF3A1	100	82.264	ENSORLG00015017411	sf3a1	99	84.000	Oryzias_latipes_hsok
ENSCHIG00000018642	SF3A1	100	82.767	ENSOMEG00000013362	sf3a1	99	83.613	Oryzias_melastigma
ENSCHIG00000018642	SF3A1	100	98.739	ENSOGAG00000012931	SF3A1	100	98.739	Otolemur_garnettii
ENSCHIG00000018642	SF3A1	100	98.235	ENSOARG00000006849	SF3A1	100	98.235	Ovis_aries
ENSCHIG00000018642	SF3A1	100	97.730	ENSPPAG00000041790	SF3A1	100	97.730	Pan_paniscus
ENSCHIG00000018642	SF3A1	100	99.369	ENSPPRG00000004391	SF3A1	100	99.369	Panthera_pardus
ENSCHIG00000018642	SF3A1	97	99.223	ENSPTIG00000000844	SF3A1	100	99.223	Panthera_tigris_altaica
ENSCHIG00000018642	SF3A1	100	98.739	ENSPTRG00000014240	SF3A1	100	98.739	Pan_troglodytes
ENSCHIG00000018642	SF3A1	100	98.991	ENSPANG00000020772	SF3A1	100	98.991	Papio_anubis
ENSCHIG00000018642	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.505	Pelodiscus_sinensis
ENSCHIG00000018642	SF3A1	96	84.424	ENSPMGG00000023096	sf3a1	100	84.717	Periophthalmus_magnuspinnatus
ENSCHIG00000018642	SF3A1	100	98.739	ENSPEMG00000009494	Sf3a1	100	98.739	Peromyscus_maniculatus_bairdii
ENSCHIG00000018642	SF3A1	69	78.221	ENSPMAG00000007139	-	90	78.113	Petromyzon_marinus
ENSCHIG00000018642	SF3A1	100	97.604	ENSPCIG00000022692	SF3A1	100	97.604	Phascolarctos_cinereus
ENSCHIG00000018642	SF3A1	100	75.377	ENSPFOG00000016768	sf3a1	93	79.048	Poecilia_formosa
ENSCHIG00000018642	SF3A1	100	83.668	ENSPLAG00000017268	sf3a1	97	85.229	Poecilia_latipinna
ENSCHIG00000018642	SF3A1	84	86.145	ENSPMEG00000019811	sf3a1	98	85.392	Poecilia_mexicana
ENSCHIG00000018642	SF3A1	100	83.543	ENSPREG00000010347	sf3a1	97	85.359	Poecilia_reticulata
ENSCHIG00000018642	SF3A1	100	98.991	ENSPPYG00000011707	SF3A1	100	98.991	Pongo_abelii
ENSCHIG00000018642	SF3A1	58	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSCHIG00000018642	SF3A1	100	99.117	ENSPCOG00000026630	SF3A1	100	99.117	Propithecus_coquereli
ENSCHIG00000018642	SF3A1	100	94.830	ENSPVAG00000017719	SF3A1	100	93.947	Pteropus_vampyrus
ENSCHIG00000018642	SF3A1	100	84.481	ENSPNYG00000018706	sf3a1	99	85.659	Pundamilia_nyererei
ENSCHIG00000018642	SF3A1	97	83.697	ENSPNAG00000003721	sf3a1	99	84.467	Pygocentrus_nattereri
ENSCHIG00000018642	SF3A1	100	98.108	ENSRNOG00000005218	Sf3a1	100	98.108	Rattus_norvegicus
ENSCHIG00000018642	SF3A1	100	98.865	ENSRBIG00000032167	SF3A1	100	98.865	Rhinopithecus_bieti
ENSCHIG00000018642	SF3A1	100	98.865	ENSRROG00000044908	SF3A1	100	98.865	Rhinopithecus_roxellana
ENSCHIG00000018642	SF3A1	97	94.961	ENSSBOG00000021960	SF3A1	100	99.114	Saimiri_boliviensis_boliviensis
ENSCHIG00000018642	SF3A1	97	95.343	ENSSHAG00000003666	SF3A1	98	95.472	Sarcophilus_harrisii
ENSCHIG00000018642	SF3A1	100	83.625	ENSSFOG00015004579	sf3a1	99	85.385	Scleropages_formosus
ENSCHIG00000018642	SF3A1	100	81.761	ENSSMAG00000004275	sf3a1	97	83.007	Scophthalmus_maximus
ENSCHIG00000018642	SF3A1	100	84.025	ENSSDUG00000022219	sf3a1	99	84.783	Seriola_dumerili
ENSCHIG00000018642	SF3A1	100	84.025	ENSSLDG00000012642	sf3a1	99	84.783	Seriola_lalandi_dorsalis
ENSCHIG00000018642	SF3A1	97	95.855	ENSSARG00000005960	SF3A1	100	95.855	Sorex_araneus
ENSCHIG00000018642	SF3A1	96	91.969	ENSSPUG00000018863	SF3A1	100	91.667	Sphenodon_punctatus
ENSCHIG00000018642	SF3A1	100	84.654	ENSSPAG00000011856	sf3a1	99	85.166	Stegastes_partitus
ENSCHIG00000018642	SF3A1	100	99.496	ENSSSCG00000010002	SF3A1	100	99.496	Sus_scrofa
ENSCHIG00000018642	SF3A1	95	94.063	ENSTGUG00000010547	SF3A1	99	93.385	Taeniopygia_guttata
ENSCHIG00000018642	SF3A1	100	81.384	ENSTRUG00000006118	sf3a1	97	82.222	Takifugu_rubripes
ENSCHIG00000018642	SF3A1	62	80.297	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSCHIG00000018642	SF3A1	100	91.677	ENSTBEG00000012771	SF3A1	100	91.677	Tupaia_belangeri
ENSCHIG00000018642	SF3A1	100	99.244	ENSTTRG00000001535	SF3A1	100	99.244	Tursiops_truncatus
ENSCHIG00000018642	SF3A1	99	98.348	ENSUAMG00000006750	SF3A1	99	98.348	Ursus_americanus
ENSCHIG00000018642	SF3A1	99	98.214	ENSUMAG00000016665	SF3A1	98	99.222	Ursus_maritimus
ENSCHIG00000018642	SF3A1	100	99.369	ENSVVUG00000003075	SF3A1	100	99.369	Vulpes_vulpes
ENSCHIG00000018642	SF3A1	100	85.947	ENSXETG00000016144	sf3a1	100	85.445	Xenopus_tropicalis
ENSCHIG00000018642	SF3A1	100	83.019	ENSXCOG00000015653	sf3a1	97	84.706	Xiphophorus_couchianus
ENSCHIG00000018642	SF3A1	100	83.145	ENSXMAG00000002753	sf3a1	97	84.837	Xiphophorus_maculatus