EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000019004 (Gene tree)
Gene ID: 102168992
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 1149 bases
Position: chrLWLT01000027.1:21265758-21266906
Accession: 102168992
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000020306	RRM_5	PF13893.6	2.8e-12	1	2
ENSCHIP00000020306	RRM_5	PF13893.6	2.8e-12	2	2
ENSCHIP00000020306	RRM_1	PF00076.22	6.4e-78	1	4
ENSCHIP00000020306	RRM_1	PF00076.22	6.4e-78	2	4
ENSCHIP00000020306	RRM_1	PF00076.22	6.4e-78	3	4
ENSCHIP00000020306	RRM_1	PF00076.22	6.4e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000028136	PABPC5-201	1149	XM_005701205	ENSCHIP00000020306	382 (aa)	XP_005701262	UPI0003AF7587

Gene Model

Click here to download ENSCHIG00000019004's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG
chx03015	mRNA surveillance pathway	KEGG
chx03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000019004's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000019004	PABPC5	94	35.802	ENSCHIG00000025894	ELAVL2	89	32.530
ENSCHIG00000019004	PABPC5	93	57.653	ENSCHIG00000006283	-	98	57.292
ENSCHIG00000019004	PABPC5	95	33.333	ENSCHIG00000020214	TIA1	84	34.247
ENSCHIG00000019004	PABPC5	96	60.055	ENSCHIG00000025759	PABPC1L	58	60.112
ENSCHIG00000019004	PABPC5	60	36.709	ENSCHIG00000025847	CELF3	64	34.524
ENSCHIG00000019004	PABPC5	95	67.677	ENSCHIG00000023714	PABPC1	97	67.526
ENSCHIG00000019004	PABPC5	95	66.667	ENSCHIG00000019398	-	56	66.854
ENSCHIG00000019004	PABPC5	93	58.163	ENSCHIG00000011138	-	98	57.812
ENSCHIG00000019004	PABPC5	95	54.270	ENSCHIG00000023385	-	59	54.213
ENSCHIG00000019004	PABPC5	96	63.187	ENSCHIG00000007231	PABPC4L	97	63.202
ENSCHIG00000019004	PABPC5	70	34.483	ENSCHIG00000009150	-	73	33.333
ENSCHIG00000019004	PABPC5	96	30.952	ENSCHIG00000023215	TRNAU1AP	62	30.675

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000019004	PABPC5	99	96.850	ENSG00000174740	PABPC5	99	96.850	Homo_sapiens
ENSCHIG00000019004	PABPC5	99	96.850	ENSAMEG00000020114	PABPC5	100	96.850	Ailuropoda_melanoleuca
ENSCHIG00000019004	PABPC5	99	96.850	ENSANAG00000005063	PABPC5	99	96.850	Aotus_nancymaae
ENSCHIG00000019004	PABPC5	100	98.429	ENSBTAG00000019942	PABPC5	100	98.429	Bos_taurus
ENSCHIG00000019004	PABPC5	99	96.325	ENSCJAG00000003665	PABPC5	99	96.325	Callithrix_jacchus
ENSCHIG00000019004	PABPC5	100	96.335	ENSCAFG00000017452	PABPC5	100	96.335	Canis_familiaris
ENSCHIG00000019004	PABPC5	100	96.335	ENSTSYG00000036351	PABPC5	100	96.335	Carlito_syrichta
ENSCHIG00000019004	PABPC5	99	87.435	ENSCAPG00000010714	PABPC5	100	87.435	Cavia_aperea
ENSCHIG00000019004	PABPC5	100	93.194	ENSCPOG00000002555	PABPC5	100	93.194	Cavia_porcellus
ENSCHIG00000019004	PABPC5	99	96.850	ENSCCAG00000032154	PABPC5	99	96.850	Cebus_capucinus
ENSCHIG00000019004	PABPC5	99	96.588	ENSCATG00000043083	PABPC5	99	96.588	Cercocebus_atys
ENSCHIG00000019004	PABPC5	100	94.503	ENSCLAG00000000647	PABPC5	100	94.503	Chinchilla_lanigera
ENSCHIG00000019004	PABPC5	99	96.588	ENSCSAG00000000065	PABPC5	99	96.588	Chlorocebus_sabaeus
ENSCHIG00000019004	PABPC5	99	96.588	ENSCANG00000011473	PABPC5	99	96.588	Colobus_angolensis_palliatus
ENSCHIG00000019004	PABPC5	100	93.194	ENSCGRG00000018699	Pabpc5	100	93.194	Cricetulus_griseus_crigri
ENSCHIG00000019004	PABPC5	100	78.329	ENSETEG00000011832	PABPC5	100	78.329	Echinops_telfairi
ENSCHIG00000019004	PABPC5	100	97.120	ENSEASG00005014396	PABPC5	100	97.120	Equus_asinus_asinus
ENSCHIG00000019004	PABPC5	100	97.120	ENSECAG00000003452	PABPC5	100	97.120	Equus_caballus
ENSCHIG00000019004	PABPC5	100	96.597	ENSFCAG00000004998	PABPC5	100	96.597	Felis_catus
ENSCHIG00000019004	PABPC5	100	95.550	ENSFDAG00000000126	PABPC5	100	95.550	Fukomys_damarensis
ENSCHIG00000019004	PABPC5	99	96.850	ENSGGOG00000007622	PABPC5	99	96.850	Gorilla_gorilla
ENSCHIG00000019004	PABPC5	95	95.872	ENSJJAG00000011960	Pabpc5	100	95.872	Jaculus_jaculus
ENSCHIG00000019004	PABPC5	99	96.588	ENSMFAG00000024561	PABPC5	99	96.588	Macaca_fascicularis
ENSCHIG00000019004	PABPC5	99	96.588	ENSMMUG00000011562	PABPC5	99	96.588	Macaca_mulatta
ENSCHIG00000019004	PABPC5	99	96.588	ENSMNEG00000037604	PABPC5	99	96.588	Macaca_nemestrina
ENSCHIG00000019004	PABPC5	99	96.588	ENSMLEG00000028318	PABPC5	99	96.588	Mandrillus_leucophaeus
ENSCHIG00000019004	PABPC5	100	95.550	ENSMICG00000041706	PABPC5	100	95.550	Microcebus_murinus
ENSCHIG00000019004	PABPC5	100	95.288	ENSMOCG00000001554	Pabpc5	100	95.288	Microtus_ochrogaster
ENSCHIG00000019004	PABPC5	99	93.158	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	Mus_caroli
ENSCHIG00000019004	PABPC5	99	93.684	ENSMUSG00000034732	Pabpc5	99	93.684	Mus_musculus
ENSCHIG00000019004	PABPC5	100	93.979	MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	Mus_pahari
ENSCHIG00000019004	PABPC5	99	93.684	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	Mus_spretus
ENSCHIG00000019004	PABPC5	100	95.812	ENSMPUG00000018465	PABPC5	100	95.812	Mustela_putorius_furo
ENSCHIG00000019004	PABPC5	100	95.288	ENSMLUG00000008244	PABPC5	100	95.288	Myotis_lucifugus
ENSCHIG00000019004	PABPC5	95	94.954	ENSNGAG00000004371	Pabpc5	100	94.954	Nannospalax_galili
ENSCHIG00000019004	PABPC5	99	96.850	ENSNLEG00000035086	PABPC5	99	96.850	Nomascus_leucogenys
ENSCHIG00000019004	PABPC5	99	97.285	ENSOPRG00000000856	PABPC5	100	97.285	Ochotona_princeps
ENSCHIG00000019004	PABPC5	100	96.597	ENSOCUG00000010919	PABPC5	100	96.597	Oryctolagus_cuniculus
ENSCHIG00000019004	PABPC5	100	95.550	ENSOGAG00000006882	PABPC5	100	95.550	Otolemur_garnettii
ENSCHIG00000019004	PABPC5	100	99.738	ENSOARG00000010260	PABPC5	100	99.738	Ovis_aries
ENSCHIG00000019004	PABPC5	99	96.588	ENSPPAG00000007378	PABPC5	99	96.588	Pan_paniscus
ENSCHIG00000019004	PABPC5	100	96.597	ENSPPRG00000010742	PABPC5	100	96.597	Panthera_pardus
ENSCHIG00000019004	PABPC5	100	96.597	ENSPTIG00000001480	PABPC5	100	96.597	Panthera_tigris_altaica
ENSCHIG00000019004	PABPC5	99	96.850	ENSPTRG00000022078	PABPC5	99	96.850	Pan_troglodytes
ENSCHIG00000019004	PABPC5	99	96.588	ENSPANG00000018282	PABPC5	99	96.588	Papio_anubis
ENSCHIG00000019004	PABPC5	100	93.979	ENSPEMG00000000171	Pabpc5	100	93.979	Peromyscus_maniculatus_bairdii
ENSCHIG00000019004	PABPC5	99	96.850	ENSPPYG00000020526	PABPC5	99	96.850	Pongo_abelii
ENSCHIG00000019004	PABPC5	99	96.727	ENSPCAG00000015577	PABPC5	100	96.727	Procavia_capensis
ENSCHIG00000019004	PABPC5	100	96.335	ENSPCOG00000000676	PABPC5	100	96.335	Propithecus_coquereli
ENSCHIG00000019004	PABPC5	100	96.859	ENSPVAG00000006465	PABPC5	100	96.859	Pteropus_vampyrus
ENSCHIG00000019004	PABPC5	100	93.979	ENSRNOG00000003354	Pabpc5	100	93.979	Rattus_norvegicus
ENSCHIG00000019004	PABPC5	99	96.588	ENSRBIG00000011760	PABPC5	99	96.588	Rhinopithecus_bieti
ENSCHIG00000019004	PABPC5	99	96.588	ENSRROG00000036708	PABPC5	99	96.588	Rhinopithecus_roxellana
ENSCHIG00000019004	PABPC5	99	96.850	ENSSBOG00000008658	PABPC5	99	96.850	Saimiri_boliviensis_boliviensis
ENSCHIG00000019004	PABPC5	100	93.979	ENSSARG00000014012	PABPC5	100	93.979	Sorex_araneus
ENSCHIG00000019004	PABPC5	100	96.859	ENSSSCG00000040194	PABPC5	100	96.859	Sus_scrofa
ENSCHIG00000019004	PABPC5	100	97.120	ENSTBEG00000016482	PABPC5	100	97.120	Tupaia_belangeri
ENSCHIG00000019004	PABPC5	100	96.335	ENSUAMG00000013627	PABPC5	100	96.335	Ursus_americanus
ENSCHIG00000019004	PABPC5	100	96.073	ENSUMAG00000023934	PABPC5	100	96.073	Ursus_maritimus
ENSCHIG00000019004	PABPC5	100	97.120	ENSVPAG00000001063	PABPC5	100	97.120	Vicugna_pacos
ENSCHIG00000019004	PABPC5	100	96.597	ENSVVUG00000013172	PABPC5	100	96.597	Vulpes_vulpes