EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000019077 (Gene tree)
Gene ID: 102173011
Gene Symbol: -
Alias: -
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 5884 bases
Position: chr10:14239507-14245390
Accession: 102173011
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000020409	RRM_1	PF00076.22	1.7e-13	1	1
ENSCHIP00000020417	RRM_1	PF00076.22	1.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000028244	-	327	-	ENSCHIP00000020409	108 (aa)	-	UPI000D1969C1
ENSCHIT00000028252	-	336	XM_005686168	ENSCHIP00000020417	111 (aa)	XP_005686225	UPI00084689F8

Gene Model

Click here to download ENSCHIG00000019077's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000019077's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000019077	-	75	32.099	ENSCHIG00000021687	HNRNPAB	55	32.099
ENSCHIG00000019077	-	100	88.288	ENSCHIG00000002964	-	100	88.288

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000019077	-	94	88.235	ENSBTAG00000050457	-	100	88.235	Bos_taurus
ENSCHIG00000019077	-	100	96.396	ENSBTAG00000008135	SLIRP	100	96.396	Bos_taurus
ENSCHIG00000019077	-	93	86.000	ENSCAFG00000017230	SLIRP	100	86.486	Canis_familiaris
ENSCHIG00000019077	-	93	86.000	ENSCAFG00020000852	-	100	86.486	Canis_lupus_dingo
ENSCHIG00000019077	-	100	79.279	ENSCPOG00000001500	-	100	79.279	Cavia_porcellus
ENSCHIG00000019077	-	100	78.378	ENSCLAG00000008545	-	100	78.378	Chinchilla_lanigera
ENSCHIG00000019077	-	83	63.333	ENSDNOG00000041397	-	82	63.333	Dasypus_novemcinctus
ENSCHIG00000019077	-	100	88.288	ENSECAG00000000712	SLIRP	100	88.288	Equus_caballus
ENSCHIG00000019077	-	92	79.798	ENSJJAG00000018723	-	100	76.577	Jaculus_jaculus
ENSCHIG00000019077	-	100	77.477	MGP_PahariEiJ_G0029754	-	100	77.477	Mus_pahari
ENSCHIG00000019077	-	93	81.000	ENSMLUG00000022403	-	100	79.279	Myotis_lucifugus
ENSCHIG00000019077	-	100	79.279	ENSOPRG00000007560	-	100	79.279	Ochotona_princeps
ENSCHIG00000019077	-	100	87.387	ENSOCUG00000009713	-	100	87.387	Oryctolagus_cuniculus
ENSCHIG00000019077	-	93	67.000	ENSOGAG00000027580	-	99	66.667	Otolemur_garnettii
ENSCHIG00000019077	-	100	74.775	ENSOARG00000016139	-	100	74.775	Ovis_aries
ENSCHIG00000019077	-	100	97.297	ENSOARG00000002642	SLIRP	100	97.297	Ovis_aries
ENSCHIG00000019077	-	89	62.500	ENSPCAG00000004290	-	100	62.162	Procavia_capensis
ENSCHIG00000019077	-	72	80.769	ENSPVAG00000006420	-	70	80.769	Pteropus_vampyrus
ENSCHIG00000019077	-	100	79.279	ENSRNOG00000012314	Slirp	100	79.279	Rattus_norvegicus
ENSCHIG00000019077	-	100	86.486	ENSTBEG00000013979	-	100	86.486	Tupaia_belangeri
ENSCHIG00000019077	-	91	76.531	ENSTTRG00000009328	-	100	77.477	Tursiops_truncatus