EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000019192 (Gene tree)
Gene ID: 102178771
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 111328 bases
Position: chr1:126112106-126223433
Accession: 102178771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000020622	XRN_N	PF03159.18	5e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000028458	XRN1-201	5154	XM_005675483	ENSCHIP00000020622	1717 (aa)	XP_005675540	UPI000D194D6B

Gene Model

Click here to download ENSCHIG00000019192's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03008	Ribosome biogenesis in eukaryotes	KEGG
chx03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000019192's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000019192	XRN1	99	89.936	ENSG00000114127	XRN1	100	98.182	Homo_sapiens
ENSCHIG00000019192	XRN1	93	72.786	ENSAPOG00000000622	xrn1	98	72.602	Acanthochromis_polyacanthus
ENSCHIG00000019192	XRN1	99	93.696	ENSAMEG00000012538	XRN1	99	93.869	Ailuropoda_melanoleuca
ENSCHIG00000019192	XRN1	92	72.403	ENSACIG00000001057	xrn1	98	72.321	Amphilophus_citrinellus
ENSCHIG00000019192	XRN1	94	71.258	ENSAOCG00000014097	xrn1	98	71.155	Amphiprion_ocellaris
ENSCHIG00000019192	XRN1	99	61.508	ENSAPEG00000006620	xrn1	91	72.472	Amphiprion_percula
ENSCHIG00000019192	XRN1	92	70.883	ENSATEG00000009752	xrn1	99	70.658	Anabas_testudineus
ENSCHIG00000019192	XRN1	98	76.409	ENSAPLG00000004905	XRN1	99	76.002	Anas_platyrhynchos
ENSCHIG00000019192	XRN1	99	73.408	ENSACAG00000004985	XRN1	99	72.958	Anolis_carolinensis
ENSCHIG00000019192	XRN1	99	89.994	ENSANAG00000029013	XRN1	99	95.234	Aotus_nancymaae
ENSCHIG00000019192	XRN1	99	59.532	ENSACLG00000004806	xrn1	99	60.269	Astatotilapia_calliptera
ENSCHIG00000019192	XRN1	99	60.842	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSCHIG00000019192	XRN1	99	95.627	ENSBTAG00000011524	XRN1	99	95.627	Bos_taurus
ENSCHIG00000019192	XRN1	70	39.498	WBGene00012730	xrn-1	80	38.614	Caenorhabditis_elegans
ENSCHIG00000019192	XRN1	99	90.110	ENSCJAG00000001872	XRN1	99	90.653	Callithrix_jacchus
ENSCHIG00000019192	XRN1	99	93.754	ENSCAFG00000007783	XRN1	99	93.927	Canis_familiaris
ENSCHIG00000019192	XRN1	99	93.754	ENSCAFG00020009120	XRN1	99	98.204	Canis_lupus_dingo
ENSCHIG00000019192	XRN1	99	90.462	ENSTSYG00000002705	XRN1	99	90.462	Carlito_syrichta
ENSCHIG00000019192	XRN1	55	76.119	ENSCAPG00000004604	-	99	76.119	Cavia_aperea
ENSCHIG00000019192	XRN1	99	90.341	ENSCCAG00000034800	XRN1	99	96.108	Cebus_capucinus
ENSCHIG00000019192	XRN1	99	90.226	ENSCATG00000041794	XRN1	99	90.399	Cercocebus_atys
ENSCHIG00000019192	XRN1	99	88.998	ENSCLAG00000001451	XRN1	99	95.721	Chinchilla_lanigera
ENSCHIG00000019192	XRN1	99	89.610	ENSCSAG00000011265	XRN1	99	89.782	Chlorocebus_sabaeus
ENSCHIG00000019192	XRN1	60	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSCHIG00000019192	XRN1	69	45.121	ENSCSAVG00000008584	-	98	44.817	Ciona_savignyi
ENSCHIG00000019192	XRN1	99	90.283	ENSCANG00000037495	XRN1	99	96.707	Colobus_angolensis_palliatus
ENSCHIG00000019192	XRN1	99	88.940	ENSCGRG00001019411	Xrn1	99	94.929	Cricetulus_griseus_chok1gshd
ENSCHIG00000019192	XRN1	99	88.940	ENSCGRG00000012464	Xrn1	99	94.929	Cricetulus_griseus_crigri
ENSCHIG00000019192	XRN1	93	67.340	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSCHIG00000019192	XRN1	66	71.958	ENSCVAG00000013089	xrn1	99	72.222	Cyprinodon_variegatus
ENSCHIG00000019192	XRN1	99	62.535	ENSDARG00000091652	xrn1	98	79.325	Danio_rerio
ENSCHIG00000019192	XRN1	99	87.421	ENSDORG00000013833	Xrn1	99	87.421	Dipodomys_ordii
ENSCHIG00000019192	XRN1	74	39.368	FBgn0020261	pcm	72	40.872	Drosophila_melanogaster
ENSCHIG00000019192	XRN1	86	99.099	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSCHIG00000019192	XRN1	99	92.192	ENSEASG00005002687	XRN1	99	96.707	Equus_asinus_asinus
ENSCHIG00000019192	XRN1	99	89.724	ENSECAG00000008301	XRN1	99	89.897	Equus_caballus
ENSCHIG00000019192	XRN1	92	83.089	ENSEEUG00000011323	XRN1	92	83.089	Erinaceus_europaeus
ENSCHIG00000019192	XRN1	99	61.373	ENSELUG00000000169	xrn1	99	61.486	Esox_lucius
ENSCHIG00000019192	XRN1	99	87.630	ENSFCAG00000027589	XRN1	99	96.923	Felis_catus
ENSCHIG00000019192	XRN1	99	74.944	ENSFALG00000007021	XRN1	99	74.550	Ficedula_albicollis
ENSCHIG00000019192	XRN1	99	89.775	ENSFDAG00000020494	XRN1	99	94.770	Fukomys_damarensis
ENSCHIG00000019192	XRN1	82	68.174	ENSGMOG00000006396	xrn1	83	67.588	Gadus_morhua
ENSCHIG00000019192	XRN1	99	75.563	ENSGALG00000002706	XRN1	99	75.169	Gallus_gallus
ENSCHIG00000019192	XRN1	99	60.159	ENSGACG00000014328	xrn1	99	60.363	Gasterosteus_aculeatus
ENSCHIG00000019192	XRN1	95	78.481	ENSGAGG00000017535	XRN1	99	78.180	Gopherus_agassizii
ENSCHIG00000019192	XRN1	99	90.283	ENSGGOG00000008047	XRN1	99	90.283	Gorilla_gorilla
ENSCHIG00000019192	XRN1	94	70.174	ENSHBUG00000005908	xrn1	98	72.541	Haplochromis_burtoni
ENSCHIG00000019192	XRN1	99	90.647	ENSHGLG00000014476	XRN1	99	95.509	Heterocephalus_glaber_female
ENSCHIG00000019192	XRN1	99	90.704	ENSHGLG00100015130	XRN1	99	95.509	Heterocephalus_glaber_male
ENSCHIG00000019192	XRN1	93	71.095	ENSHCOG00000014062	xrn1	99	69.531	Hippocampus_comes
ENSCHIG00000019192	XRN1	99	61.718	ENSIPUG00000015229	xrn1	99	61.740	Ictalurus_punctatus
ENSCHIG00000019192	XRN1	99	91.792	ENSSTOG00000013552	XRN1	99	96.707	Ictidomys_tridecemlineatus
ENSCHIG00000019192	XRN1	98	87.419	ENSJJAG00000010863	Xrn1	99	93.713	Jaculus_jaculus
ENSCHIG00000019192	XRN1	94	61.384	ENSKMAG00000021356	xrn1	94	74.423	Kryptolebias_marmoratus
ENSCHIG00000019192	XRN1	99	59.560	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSCHIG00000019192	XRN1	99	69.858	ENSLACG00000009020	XRN1	99	69.771	Latimeria_chalumnae
ENSCHIG00000019192	XRN1	99	64.854	ENSLOCG00000007944	xrn1	99	64.682	Lepisosteus_oculatus
ENSCHIG00000019192	XRN1	62	95.323	ENSLAFG00000015426	XRN1	100	95.323	Loxodonta_africana
ENSCHIG00000019192	XRN1	99	90.341	ENSMFAG00000032599	XRN1	99	90.515	Macaca_fascicularis
ENSCHIG00000019192	XRN1	99	90.283	ENSMMUG00000014038	XRN1	99	90.457	Macaca_mulatta
ENSCHIG00000019192	XRN1	99	90.110	ENSMNEG00000034217	XRN1	99	90.283	Macaca_nemestrina
ENSCHIG00000019192	XRN1	91	70.584	ENSMAMG00000013219	xrn1	94	76.434	Mastacembelus_armatus
ENSCHIG00000019192	XRN1	99	59.476	ENSMZEG00005015099	xrn1	99	60.157	Maylandia_zebra
ENSCHIG00000019192	XRN1	99	75.393	ENSMGAG00000006333	XRN1	99	74.985	Meleagris_gallopavo
ENSCHIG00000019192	XRN1	99	90.364	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSCHIG00000019192	XRN1	56	94.136	ENSMOCG00000008665	Xrn1	99	94.136	Microtus_ochrogaster
ENSCHIG00000019192	XRN1	99	79.886	ENSMODG00000021236	XRN1	99	79.829	Monodelphis_domestica
ENSCHIG00000019192	XRN1	94	66.588	ENSMALG00000004098	xrn1	98	66.406	Monopterus_albus
ENSCHIG00000019192	XRN1	99	79.722	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSCHIG00000019192	XRN1	99	87.348	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSCHIG00000019192	XRN1	99	87.580	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSCHIG00000019192	XRN1	99	87.638	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSCHIG00000019192	XRN1	99	90.758	ENSMPUG00000012040	XRN1	99	90.930	Mustela_putorius_furo
ENSCHIG00000019192	XRN1	99	91.304	ENSMLUG00000016885	XRN1	99	91.304	Myotis_lucifugus
ENSCHIG00000019192	XRN1	56	94.311	ENSNGAG00000023964	Xrn1	99	90.650	Nannospalax_galili
ENSCHIG00000019192	XRN1	99	90.283	ENSNLEG00000004726	XRN1	99	90.457	Nomascus_leucogenys
ENSCHIG00000019192	XRN1	72	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSCHIG00000019192	XRN1	79	84.211	ENSOPRG00000007337	-	78	84.211	Ochotona_princeps
ENSCHIG00000019192	XRN1	99	60.956	ENSONIG00000016673	xrn1	99	64.036	Oreochromis_niloticus
ENSCHIG00000019192	XRN1	92	76.015	ENSOANG00000006735	XRN1	99	76.030	Ornithorhynchus_anatinus
ENSCHIG00000019192	XRN1	99	90.586	ENSOCUG00000001861	XRN1	99	90.586	Oryctolagus_cuniculus
ENSCHIG00000019192	XRN1	94	72.458	ENSORLG00000013005	xrn1	97	72.378	Oryzias_latipes
ENSCHIG00000019192	XRN1	94	71.952	ENSORLG00020005559	xrn1	97	72.378	Oryzias_latipes_hni
ENSCHIG00000019192	XRN1	99	61.202	ENSORLG00015022523	xrn1	89	72.218	Oryzias_latipes_hsok
ENSCHIG00000019192	XRN1	93	72.683	ENSOMEG00000015397	xrn1	99	72.786	Oryzias_melastigma
ENSCHIG00000019192	XRN1	99	86.854	ENSOGAG00000000170	XRN1	99	86.854	Otolemur_garnettii
ENSCHIG00000019192	XRN1	100	98.390	ENSOARG00000006343	XRN1	100	98.390	Ovis_aries
ENSCHIG00000019192	XRN1	99	89.994	ENSPPAG00000010180	XRN1	99	89.994	Pan_paniscus
ENSCHIG00000019192	XRN1	99	91.965	ENSPPRG00000007125	XRN1	99	92.139	Panthera_pardus
ENSCHIG00000019192	XRN1	99	91.965	ENSPTIG00000021081	XRN1	99	92.139	Panthera_tigris_altaica
ENSCHIG00000019192	XRN1	99	90.052	ENSPTRG00000015482	XRN1	99	90.052	Pan_troglodytes
ENSCHIG00000019192	XRN1	99	90.341	ENSPANG00000010638	XRN1	99	90.341	Papio_anubis
ENSCHIG00000019192	XRN1	99	77.117	ENSPSIG00000018050	XRN1	99	77.002	Pelodiscus_sinensis
ENSCHIG00000019192	XRN1	56	76.923	ENSPMGG00000002648	xrn1	98	76.935	Periophthalmus_magnuspinnatus
ENSCHIG00000019192	XRN1	56	94.770	ENSPEMG00000020610	Xrn1	99	94.770	Peromyscus_maniculatus_bairdii
ENSCHIG00000019192	XRN1	64	50.294	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSCHIG00000019192	XRN1	95	87.924	ENSPCIG00000028735	XRN1	99	89.753	Phascolarctos_cinereus
ENSCHIG00000019192	XRN1	91	63.367	ENSPFOG00000013932	xrn1	99	63.386	Poecilia_formosa
ENSCHIG00000019192	XRN1	91	62.766	ENSPLAG00000021653	xrn1	99	63.178	Poecilia_latipinna
ENSCHIG00000019192	XRN1	89	63.514	ENSPMEG00000003076	xrn1	95	63.665	Poecilia_mexicana
ENSCHIG00000019192	XRN1	94	69.541	ENSPREG00000021147	xrn1	97	69.267	Poecilia_reticulata
ENSCHIG00000019192	XRN1	99	89.380	ENSPPYG00000014172	XRN1	99	89.380	Pongo_abelii
ENSCHIG00000019192	XRN1	88	81.752	ENSPCAG00000005638	XRN1	96	81.752	Procavia_capensis
ENSCHIG00000019192	XRN1	99	90.462	ENSPCOG00000013089	XRN1	99	97.006	Propithecus_coquereli
ENSCHIG00000019192	XRN1	94	92.201	ENSPVAG00000016265	XRN1	96	92.201	Pteropus_vampyrus
ENSCHIG00000019192	XRN1	94	71.203	ENSPNYG00000010570	xrn1	98	71.203	Pundamilia_nyererei
ENSCHIG00000019192	XRN1	99	60.557	ENSPNAG00000023531	xrn1	99	60.485	Pygocentrus_nattereri
ENSCHIG00000019192	XRN1	99	88.246	ENSRNOG00000042951	Xrn1	99	88.246	Rattus_norvegicus
ENSCHIG00000019192	XRN1	99	89.416	ENSRBIG00000041227	XRN1	99	89.532	Rhinopithecus_bieti
ENSCHIG00000019192	XRN1	66	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSCHIG00000019192	XRN1	99	89.763	ENSSBOG00000029561	XRN1	99	89.763	Saimiri_boliviensis_boliviensis
ENSCHIG00000019192	XRN1	98	80.655	ENSSHAG00000016207	XRN1	99	80.538	Sarcophilus_harrisii
ENSCHIG00000019192	XRN1	99	61.645	ENSSFOG00015024211	xrn1	99	61.552	Scleropages_formosus
ENSCHIG00000019192	XRN1	92	71.890	ENSSMAG00000016534	xrn1	98	71.809	Scophthalmus_maximus
ENSCHIG00000019192	XRN1	86	72.254	ENSSDUG00000010306	xrn1	95	72.254	Seriola_dumerili
ENSCHIG00000019192	XRN1	93	71.815	ENSSLDG00000021543	xrn1	99	71.815	Seriola_lalandi_dorsalis
ENSCHIG00000019192	XRN1	66	84.917	ENSSARG00000007741	-	81	84.917	Sorex_araneus
ENSCHIG00000019192	XRN1	99	76.705	ENSTGUG00000008498	XRN1	99	76.301	Taeniopygia_guttata
ENSCHIG00000019192	XRN1	94	69.188	ENSTRUG00000004895	xrn1	96	75.783	Takifugu_rubripes
ENSCHIG00000019192	XRN1	99	57.248	ENSTNIG00000017615	xrn1	99	57.466	Tetraodon_nigroviridis
ENSCHIG00000019192	XRN1	85	97.844	ENSTBEG00000003256	XRN1	84	97.844	Tupaia_belangeri
ENSCHIG00000019192	XRN1	99	88.384	ENSTTRG00000012914	XRN1	99	88.384	Tursiops_truncatus
ENSCHIG00000019192	XRN1	99	92.486	ENSUAMG00000001608	XRN1	99	98.204	Ursus_americanus
ENSCHIG00000019192	XRN1	99	94.335	ENSUMAG00000013625	XRN1	99	94.509	Ursus_maritimus
ENSCHIG00000019192	XRN1	99	89.023	ENSVPAG00000004690	XRN1	99	89.023	Vicugna_pacos
ENSCHIG00000019192	XRN1	99	93.985	ENSVVUG00000024461	XRN1	99	98.204	Vulpes_vulpes
ENSCHIG00000019192	XRN1	99	67.825	ENSXETG00000000619	xrn1	97	88.441	Xenopus_tropicalis
ENSCHIG00000019192	XRN1	94	72.372	ENSXCOG00000007917	xrn1	97	72.372	Xiphophorus_couchianus
ENSCHIG00000019192	XRN1	90	71.720	ENSXMAG00000018320	xrn1	98	71.883	Xiphophorus_maculatus