EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000019409 (Gene tree)
Gene ID: 102189012
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 23830 bases
Position: chr5:69650924-69674753
Accession: 102189012
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000020929	zf-C2H2	PF00096.26	4.9e-20	1	2
ENSCHIP00000020929	zf-C2H2	PF00096.26	4.9e-20	2	2
ENSCHIP00000020929	zf-met	PF12874.7	9.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000028769	PRDM4-201	3959	XM_018048219	ENSCHIP00000020929	801 (aa)	XP_017903708	UPI0003AFDF97

Gene Model

Click here to download ENSCHIG00000019409's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000019409's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000019409	PRDM4	51	31.818	ENSCHIG00000016222	PRDM15	54	39.535

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000019409	PRDM4	100	96.879	ENSG00000110851	PRDM4	100	97.333	Homo_sapiens
ENSCHIG00000019409	PRDM4	99	97.372	ENSAMEG00000016174	PRDM4	99	97.372	Ailuropoda_melanoleuca
ENSCHIG00000019409	PRDM4	99	87.845	ENSAPLG00000009846	PRDM4	99	87.343	Anas_platyrhynchos
ENSCHIG00000019409	PRDM4	100	96.754	ENSANAG00000024800	PRDM4	100	96.754	Aotus_nancymaae
ENSCHIG00000019409	PRDM4	100	99.126	ENSBTAG00000012999	PRDM4	100	99.126	Bos_taurus
ENSCHIG00000019409	PRDM4	100	96.380	ENSCJAG00000015261	PRDM4	100	96.380	Callithrix_jacchus
ENSCHIG00000019409	PRDM4	100	97.628	ENSCAFG00000001788	PRDM4	100	97.628	Canis_familiaris
ENSCHIG00000019409	PRDM4	100	97.628	ENSCAFG00020004916	PRDM4	100	97.628	Canis_lupus_dingo
ENSCHIG00000019409	PRDM4	100	97.004	ENSTSYG00000009248	PRDM4	100	97.004	Carlito_syrichta
ENSCHIG00000019409	PRDM4	99	90.864	ENSCAPG00000013937	PRDM4	99	90.864	Cavia_aperea
ENSCHIG00000019409	PRDM4	99	90.311	ENSCPOG00000022385	PRDM4	100	90.311	Cavia_porcellus
ENSCHIG00000019409	PRDM4	100	96.879	ENSCCAG00000036033	PRDM4	100	96.879	Cebus_capucinus
ENSCHIG00000019409	PRDM4	100	96.504	ENSCATG00000044797	PRDM4	100	96.504	Cercocebus_atys
ENSCHIG00000019409	PRDM4	99	92.164	ENSCLAG00000007545	PRDM4	100	92.164	Chinchilla_lanigera
ENSCHIG00000019409	PRDM4	100	96.754	ENSCSAG00000002896	PRDM4	100	96.754	Chlorocebus_sabaeus
ENSCHIG00000019409	PRDM4	71	96.364	ENSCHOG00000001744	PRDM4	86	96.364	Choloepus_hoffmanni
ENSCHIG00000019409	PRDM4	99	88.582	ENSCPBG00000023187	PRDM4	100	88.080	Chrysemys_picta_bellii
ENSCHIG00000019409	PRDM4	100	96.629	ENSCANG00000021804	PRDM4	100	96.629	Colobus_angolensis_palliatus
ENSCHIG00000019409	PRDM4	99	92.164	ENSCGRG00001015102	-	100	91.915	Cricetulus_griseus_chok1gshd
ENSCHIG00000019409	PRDM4	96	92.129	ENSCGRG00000004044	-	100	91.871	Cricetulus_griseus_crigri
ENSCHIG00000019409	PRDM4	100	95.880	ENSDNOG00000032478	PRDM4	100	96.132	Dasypus_novemcinctus
ENSCHIG00000019409	PRDM4	99	80.803	ENSDORG00000015081	-	100	80.928	Dipodomys_ordii
ENSCHIG00000019409	PRDM4	93	46.067	ENSEBUG00000003775	prdm4	99	46.335	Eptatretus_burgeri
ENSCHIG00000019409	PRDM4	100	97.628	ENSECAG00000015423	PRDM4	100	97.628	Equus_caballus
ENSCHIG00000019409	PRDM4	94	93.076	ENSEEUG00000006569	PRDM4	99	92.810	Erinaceus_europaeus
ENSCHIG00000019409	PRDM4	99	60.632	ENSELUG00000015265	prdm4	93	61.948	Esox_lucius
ENSCHIG00000019409	PRDM4	100	98.002	ENSFCAG00000022478	PRDM4	100	98.002	Felis_catus
ENSCHIG00000019409	PRDM4	99	87.955	ENSFALG00000013342	PRDM4	100	87.578	Ficedula_albicollis
ENSCHIG00000019409	PRDM4	100	87.173	ENSGALG00000012619	PRDM4	100	86.675	Gallus_gallus
ENSCHIG00000019409	PRDM4	99	88.221	ENSGAGG00000002763	PRDM4	95	87.719	Gopherus_agassizii
ENSCHIG00000019409	PRDM4	99	96.750	ENSGGOG00000001244	PRDM4	99	96.750	Gorilla_gorilla
ENSCHIG00000019409	PRDM4	99	93.726	ENSHGLG00000004590	PRDM4	98	93.350	Heterocephalus_glaber_female
ENSCHIG00000019409	PRDM4	99	92.547	ENSHGLG00100007464	PRDM4	100	92.174	Heterocephalus_glaber_male
ENSCHIG00000019409	PRDM4	95	61.528	ENSIPUG00000024162	prdm4	93	61.619	Ictalurus_punctatus
ENSCHIG00000019409	PRDM4	100	96.130	ENSSTOG00000016168	PRDM4	100	96.130	Ictidomys_tridecemlineatus
ENSCHIG00000019409	PRDM4	99	94.340	ENSJJAG00000022448	-	95	92.742	Jaculus_jaculus
ENSCHIG00000019409	PRDM4	99	72.401	ENSLACG00000007452	PRDM4	99	73.144	Latimeria_chalumnae
ENSCHIG00000019409	PRDM4	78	41.953	ENSLOCG00000017092	prdm4	100	53.680	Lepisosteus_oculatus
ENSCHIG00000019409	PRDM4	98	96.954	ENSLAFG00000001483	PRDM4	100	96.954	Loxodonta_africana
ENSCHIG00000019409	PRDM4	100	96.879	ENSMFAG00000041862	PRDM4	100	96.879	Macaca_fascicularis
ENSCHIG00000019409	PRDM4	100	96.879	ENSMMUG00000015550	PRDM4	100	96.879	Macaca_mulatta
ENSCHIG00000019409	PRDM4	100	96.629	ENSMNEG00000032319	PRDM4	100	96.629	Macaca_nemestrina
ENSCHIG00000019409	PRDM4	100	96.754	ENSMLEG00000039607	PRDM4	100	96.754	Mandrillus_leucophaeus
ENSCHIG00000019409	PRDM4	99	80.000	ENSMGAG00000012815	PRDM4	100	79.500	Meleagris_gallopavo
ENSCHIG00000019409	PRDM4	100	95.880	ENSMICG00000007807	PRDM4	100	95.880	Microcebus_murinus
ENSCHIG00000019409	PRDM4	99	93.358	ENSMOCG00000000753	Prdm4	99	93.108	Microtus_ochrogaster
ENSCHIG00000019409	PRDM4	99	94.605	ENSMUSG00000035529	Prdm4	100	94.354	Mus_musculus
ENSCHIG00000019409	PRDM4	99	93.476	MGP_PahariEiJ_G0031398	Prdm4	100	93.520	Mus_pahari
ENSCHIG00000019409	PRDM4	99	94.856	MGP_SPRETEiJ_G0016505	Prdm4	100	94.917	Mus_spretus
ENSCHIG00000019409	PRDM4	99	91.521	ENSMPUG00000012238	PRDM4	99	91.521	Mustela_putorius_furo
ENSCHIG00000019409	PRDM4	99	96.867	ENSMLUG00000000767	PRDM4	99	96.867	Myotis_lucifugus
ENSCHIG00000019409	PRDM4	99	95.358	ENSNGAG00000018627	Prdm4	100	95.358	Nannospalax_galili
ENSCHIG00000019409	PRDM4	100	96.754	ENSNLEG00000006748	PRDM4	100	96.754	Nomascus_leucogenys
ENSCHIG00000019409	PRDM4	89	89.906	ENSMEUG00000004495	PRDM4	89	89.906	Notamacropus_eugenii
ENSCHIG00000019409	PRDM4	88	95.536	ENSOPRG00000010192	PRDM4	89	95.536	Ochotona_princeps
ENSCHIG00000019409	PRDM4	99	89.875	ENSODEG00000014750	PRDM4	99	89.500	Octodon_degus
ENSCHIG00000019409	PRDM4	100	91.511	ENSOANG00000005526	PRDM4	100	91.511	Ornithorhynchus_anatinus
ENSCHIG00000019409	PRDM4	93	96.853	ENSOCUG00000012859	PRDM4	96	96.853	Oryctolagus_cuniculus
ENSCHIG00000019409	PRDM4	99	97.114	ENSOGAG00000011945	PRDM4	100	97.114	Otolemur_garnettii
ENSCHIG00000019409	PRDM4	100	99.251	ENSOARG00000017955	PRDM4	100	99.251	Ovis_aries
ENSCHIG00000019409	PRDM4	100	96.879	ENSPPAG00000038438	PRDM4	100	96.879	Pan_paniscus
ENSCHIG00000019409	PRDM4	100	98.002	ENSPPRG00000004144	PRDM4	100	98.002	Panthera_pardus
ENSCHIG00000019409	PRDM4	100	98.002	ENSPTIG00000005847	PRDM4	100	98.002	Panthera_tigris_altaica
ENSCHIG00000019409	PRDM4	100	96.879	ENSPTRG00000005400	PRDM4	100	96.879	Pan_troglodytes
ENSCHIG00000019409	PRDM4	100	96.879	ENSPANG00000022084	PRDM4	100	96.879	Papio_anubis
ENSCHIG00000019409	PRDM4	99	60.451	ENSPKIG00000000875	prdm4	99	60.333	Paramormyrops_kingsleyae
ENSCHIG00000019409	PRDM4	91	82.319	ENSPSIG00000012066	PRDM4	100	82.319	Pelodiscus_sinensis
ENSCHIG00000019409	PRDM4	99	94.856	ENSPEMG00000014598	Prdm4	100	94.856	Peromyscus_maniculatus_bairdii
ENSCHIG00000019409	PRDM4	100	89.303	ENSPCIG00000009471	PRDM4	100	89.303	Phascolarctos_cinereus
ENSCHIG00000019409	PRDM4	100	96.754	ENSPPYG00000004913	PRDM4	100	96.754	Pongo_abelii
ENSCHIG00000019409	PRDM4	83	96.117	ENSPCAG00000009987	PRDM4	83	96.117	Procavia_capensis
ENSCHIG00000019409	PRDM4	100	95.755	ENSPCOG00000021060	PRDM4	100	95.755	Propithecus_coquereli
ENSCHIG00000019409	PRDM4	100	96.758	ENSPVAG00000001596	PRDM4	100	96.758	Pteropus_vampyrus
ENSCHIG00000019409	PRDM4	99	93.985	ENSRNOG00000004962	Prdm4	100	93.609	Rattus_norvegicus
ENSCHIG00000019409	PRDM4	100	96.629	ENSRBIG00000035488	PRDM4	100	96.629	Rhinopithecus_bieti
ENSCHIG00000019409	PRDM4	100	96.754	ENSRROG00000012779	PRDM4	100	96.754	Rhinopithecus_roxellana
ENSCHIG00000019409	PRDM4	100	96.754	ENSSBOG00000000403	PRDM4	100	96.754	Saimiri_boliviensis_boliviensis
ENSCHIG00000019409	PRDM4	99	64.409	ENSSFOG00015023358	prdm4	99	63.748	Scleropages_formosus
ENSCHIG00000019409	PRDM4	100	98.002	ENSSSCG00000000160	PRDM4	100	98.002	Sus_scrofa
ENSCHIG00000019409	PRDM4	99	88.095	ENSTGUG00000010962	-	99	87.719	Taeniopygia_guttata
ENSCHIG00000019409	PRDM4	73	89.761	ENSTBEG00000001732	PRDM4	84	89.761	Tupaia_belangeri
ENSCHIG00000019409	PRDM4	100	97.628	ENSTTRG00000011056	PRDM4	100	97.628	Tursiops_truncatus
ENSCHIG00000019409	PRDM4	100	97.753	ENSUAMG00000022796	PRDM4	100	97.753	Ursus_americanus
ENSCHIG00000019409	PRDM4	100	97.753	ENSUMAG00000017231	PRDM4	100	97.753	Ursus_maritimus
ENSCHIG00000019409	PRDM4	99	97.992	ENSVPAG00000002215	PRDM4	100	97.992	Vicugna_pacos
ENSCHIG00000019409	PRDM4	100	97.628	ENSVVUG00000023397	PRDM4	100	97.628	Vulpes_vulpes