EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000020327 (Gene tree)
Gene ID: 102183645
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 55767 bases
Position: chr2:91489525-91545291
Accession: 102183645
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000022367	Rif1_N	PF12231.8	4.4e-76	1	1
ENSCHIP00000022348	Rif1_N	PF12231.8	4.4e-76	1	1
ENSCHIP00000022323	Rif1_N	PF12231.8	7.3e-70	1	2
ENSCHIP00000022323	Rif1_N	PF12231.8	7.3e-70	2	2
ENSCHIP00000022306	Rif1_N	PF12231.8	7.6e-70	1	2
ENSCHIP00000022306	Rif1_N	PF12231.8	7.6e-70	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000030227	RIF1-204	7345	XM_018062838	ENSCHIP00000022367	2431 (aa)	XP_017918327	UPI000D1909BF
ENSCHIT00000030166	RIF1-201	7510	-	ENSCHIP00000022306	2486 (aa)	-	UPI000D1930FA
ENSCHIT00000030183	RIF1-202	7429	-	ENSCHIP00000022323	2459 (aa)	-	UPI000D195090
ENSCHIT00000030208	RIF1-203	7423	XM_005676151	ENSCHIP00000022348	2457 (aa)	XP_005676208	UPI0008475DE7

Gene Model

Click here to download ENSCHIG00000020327's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000020327's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000020327	RIF1	100	79.210	ENSG00000080345	RIF1	97	88.429	Homo_sapiens
ENSCHIG00000020327	RIF1	64	48.246	ENSAPOG00000011073	rif1	64	48.246	Acanthochromis_polyacanthus
ENSCHIG00000020327	RIF1	99	82.588	ENSAMEG00000008461	RIF1	100	82.588	Ailuropoda_melanoleuca
ENSCHIG00000020327	RIF1	65	50.386	ENSACIG00000017765	rif1	71	50.386	Amphilophus_citrinellus
ENSCHIG00000020327	RIF1	63	50.159	ENSAOCG00000017231	rif1	65	50.159	Amphiprion_ocellaris
ENSCHIG00000020327	RIF1	71	56.298	ENSAPEG00000013228	rif1	63	56.298	Amphiprion_percula
ENSCHIG00000020327	RIF1	65	48.885	ENSATEG00000022887	rif1	67	46.652	Anabas_testudineus
ENSCHIG00000020327	RIF1	86	60.925	ENSAPLG00000007092	RIF1	94	60.925	Anas_platyrhynchos
ENSCHIG00000020327	RIF1	84	57.391	ENSACAG00000003714	RIF1	90	57.391	Anolis_carolinensis
ENSCHIG00000020327	RIF1	99	77.590	ENSANAG00000024840	RIF1	99	77.590	Aotus_nancymaae
ENSCHIG00000020327	RIF1	57	47.166	ENSAMXG00000010910	rif1	51	51.837	Astyanax_mexicanus
ENSCHIG00000020327	RIF1	94	94.600	ENSBTAG00000021020	RIF1	100	94.600	Bos_taurus
ENSCHIG00000020327	RIF1	99	77.156	ENSCJAG00000003138	RIF1	99	77.156	Callithrix_jacchus
ENSCHIG00000020327	RIF1	100	80.912	ENSCAFG00000005670	RIF1	97	80.912	Canis_familiaris
ENSCHIG00000020327	RIF1	100	80.089	ENSCAFG00020016401	RIF1	100	80.089	Canis_lupus_dingo
ENSCHIG00000020327	RIF1	96	84.946	ENSTSYG00000008861	RIF1	99	84.946	Carlito_syrichta
ENSCHIG00000020327	RIF1	80	75.059	ENSCAPG00000008957	RIF1	96	75.059	Cavia_aperea
ENSCHIG00000020327	RIF1	99	69.817	ENSCPOG00000037898	RIF1	99	69.944	Cavia_porcellus
ENSCHIG00000020327	RIF1	99	76.532	ENSCCAG00000024760	RIF1	99	76.532	Cebus_capucinus
ENSCHIG00000020327	RIF1	100	79.210	ENSCATG00000033353	RIF1	100	79.210	Cercocebus_atys
ENSCHIG00000020327	RIF1	96	72.655	ENSCLAG00000001517	RIF1	99	72.864	Chinchilla_lanigera
ENSCHIG00000020327	RIF1	100	79.291	ENSCSAG00000016089	RIF1	100	79.291	Chlorocebus_sabaeus
ENSCHIG00000020327	RIF1	97	77.826	ENSCHOG00000007187	RIF1	97	77.826	Choloepus_hoffmanni
ENSCHIG00000020327	RIF1	86	68.432	ENSCPBG00000025885	RIF1	93	68.098	Chrysemys_picta_bellii
ENSCHIG00000020327	RIF1	100	78.131	ENSCANG00000028962	RIF1	100	78.653	Colobus_angolensis_palliatus
ENSCHIG00000020327	RIF1	99	68.901	ENSCGRG00001024589	Rif1	100	69.253	Cricetulus_griseus_chok1gshd
ENSCHIG00000020327	RIF1	99	69.498	ENSCGRG00000010713	Rif1	100	69.853	Cricetulus_griseus_crigri
ENSCHIG00000020327	RIF1	60	56.967	ENSCSEG00000003945	rif1	64	56.967	Cynoglossus_semilaevis
ENSCHIG00000020327	RIF1	66	47.758	ENSCVAG00000022479	rif1	70	47.758	Cyprinodon_variegatus
ENSCHIG00000020327	RIF1	66	49.452	ENSDARG00000062650	rif1	67	49.258	Danio_rerio
ENSCHIG00000020327	RIF1	100	75.423	ENSDNOG00000011194	RIF1	97	75.423	Dasypus_novemcinctus
ENSCHIG00000020327	RIF1	94	72.610	ENSETEG00000012421	RIF1	92	72.610	Echinops_telfairi
ENSCHIG00000020327	RIF1	93	96.040	ENSEASG00005023434	RIF1	99	96.040	Equus_asinus_asinus
ENSCHIG00000020327	RIF1	96	92.598	ENSECAG00000012679	RIF1	99	92.598	Equus_caballus
ENSCHIG00000020327	RIF1	62	51.406	ENSELUG00000006826	rif1	56	51.152	Esox_lucius
ENSCHIG00000020327	RIF1	100	81.844	ENSFCAG00000029742	RIF1	100	81.844	Felis_catus
ENSCHIG00000020327	RIF1	78	62.500	ENSFALG00000013874	RIF1	91	62.805	Ficedula_albicollis
ENSCHIG00000020327	RIF1	99	73.244	ENSFDAG00000006538	RIF1	99	73.185	Fukomys_damarensis
ENSCHIG00000020327	RIF1	63	49.483	ENSFHEG00000013721	rif1	65	48.246	Fundulus_heteroclitus
ENSCHIG00000020327	RIF1	54	49.600	ENSGMOG00000003517	rif1	81	49.674	Gadus_morhua
ENSCHIG00000020327	RIF1	82	57.212	ENSGALG00000012484	RIF1	94	57.212	Gallus_gallus
ENSCHIG00000020327	RIF1	66	50.079	ENSGAFG00000017196	rif1	71	53.970	Gambusia_affinis
ENSCHIG00000020327	RIF1	60	56.098	ENSGACG00000008579	rif1	68	55.600	Gasterosteus_aculeatus
ENSCHIG00000020327	RIF1	86	69.851	ENSGAGG00000012595	RIF1	96	63.198	Gopherus_agassizii
ENSCHIG00000020327	RIF1	90	88.714	ENSGGOG00000040178	RIF1	96	88.714	Gorilla_gorilla
ENSCHIG00000020327	RIF1	73	54.118	ENSHBUG00000007125	rif1	66	52.308	Haplochromis_burtoni
ENSCHIG00000020327	RIF1	94	73.187	ENSHGLG00100009807	RIF1	99	73.339	Heterocephalus_glaber_male
ENSCHIG00000020327	RIF1	63	48.761	ENSHCOG00000015943	rif1	60	48.732	Hippocampus_comes
ENSCHIG00000020327	RIF1	50	52.470	ENSIPUG00000021703	rif1	50	52.534	Ictalurus_punctatus
ENSCHIG00000020327	RIF1	100	76.252	ENSSTOG00000020712	RIF1	100	76.332	Ictidomys_tridecemlineatus
ENSCHIG00000020327	RIF1	99	69.007	ENSJJAG00000023000	Rif1	100	69.209	Jaculus_jaculus
ENSCHIG00000020327	RIF1	63	49.843	ENSKMAG00000002852	rif1	66	49.843	Kryptolebias_marmoratus
ENSCHIG00000020327	RIF1	63	52.143	ENSLBEG00000023196	rif1	58	50.308	Labrus_bergylta
ENSCHIG00000020327	RIF1	86	60.446	ENSLACG00000005425	RIF1	90	60.446	Latimeria_chalumnae
ENSCHIG00000020327	RIF1	69	53.297	ENSLOCG00000002657	rif1	88	47.434	Lepisosteus_oculatus
ENSCHIG00000020327	RIF1	99	76.613	ENSLAFG00000009796	RIF1	100	76.613	Loxodonta_africana
ENSCHIG00000020327	RIF1	100	79.089	ENSMFAG00000032233	RIF1	100	79.089	Macaca_fascicularis
ENSCHIG00000020327	RIF1	100	79.170	ENSMMUG00000008611	RIF1	100	79.170	Macaca_mulatta
ENSCHIG00000020327	RIF1	100	79.170	ENSMNEG00000031616	RIF1	100	79.170	Macaca_nemestrina
ENSCHIG00000020327	RIF1	100	79.130	ENSMLEG00000042945	RIF1	100	79.130	Mandrillus_leucophaeus
ENSCHIG00000020327	RIF1	67	51.349	ENSMAMG00000001745	rif1	66	48.696	Mastacembelus_armatus
ENSCHIG00000020327	RIF1	76	43.105	ENSMZEG00005020920	rif1	70	50.861	Maylandia_zebra
ENSCHIG00000020327	RIF1	85	57.867	ENSMGAG00000012732	RIF1	92	57.867	Meleagris_gallopavo
ENSCHIG00000020327	RIF1	95	88.858	ENSMAUG00000013158	Rif1	99	88.858	Mesocricetus_auratus
ENSCHIG00000020327	RIF1	100	80.548	ENSMICG00000046127	RIF1	100	80.548	Microcebus_murinus
ENSCHIG00000020327	RIF1	99	68.836	ENSMOCG00000009381	Rif1	100	68.715	Microtus_ochrogaster
ENSCHIG00000020327	RIF1	62	50.120	ENSMMOG00000006519	rif1	63	50.120	Mola_mola
ENSCHIG00000020327	RIF1	99	60.616	ENSMODG00000003703	RIF1	99	60.656	Monodelphis_domestica
ENSCHIG00000020327	RIF1	63	48.999	ENSMALG00000016759	rif1	72	49.159	Monopterus_albus
ENSCHIG00000020327	RIF1	99	69.042	MGP_CAROLIEiJ_G0023555	Rif1	100	69.095	Mus_caroli
ENSCHIG00000020327	RIF1	99	69.160	ENSMUSG00000036202	Rif1	100	69.212	Mus_musculus
ENSCHIG00000020327	RIF1	99	67.811	MGP_PahariEiJ_G0025006	Rif1	100	67.945	Mus_pahari
ENSCHIG00000020327	RIF1	99	69.113	MGP_SPRETEiJ_G0024476	Rif1	100	69.073	Mus_spretus
ENSCHIG00000020327	RIF1	99	81.331	ENSMPUG00000000371	RIF1	99	81.331	Mustela_putorius_furo
ENSCHIG00000020327	RIF1	90	78.636	ENSMLUG00000003376	RIF1	99	78.725	Myotis_lucifugus
ENSCHIG00000020327	RIF1	99	72.319	ENSNGAG00000009268	Rif1	99	72.278	Nannospalax_galili
ENSCHIG00000020327	RIF1	76	45.820	ENSNBRG00000014257	rif1	70	49.462	Neolamprologus_brichardi
ENSCHIG00000020327	RIF1	100	78.256	ENSNLEG00000010955	RIF1	100	78.256	Nomascus_leucogenys
ENSCHIG00000020327	RIF1	76	77.578	ENSMEUG00000007601	-	83	77.578	Notamacropus_eugenii
ENSCHIG00000020327	RIF1	99	69.879	ENSODEG00000003950	RIF1	99	70.446	Octodon_degus
ENSCHIG00000020327	RIF1	76	48.171	ENSONIG00000013657	rif1	62	51.786	Oreochromis_niloticus
ENSCHIG00000020327	RIF1	73	75.424	ENSOANG00000006078	-	77	75.424	Ornithorhynchus_anatinus
ENSCHIG00000020327	RIF1	100	75.342	ENSOCUG00000017435	RIF1	100	75.373	Oryctolagus_cuniculus
ENSCHIG00000020327	RIF1	65	46.586	ENSORLG00020001302	rif1	70	46.662	Oryzias_latipes_hni
ENSCHIG00000020327	RIF1	65	45.880	ENSORLG00015000009	rif1	69	46.889	Oryzias_latipes_hsok
ENSCHIG00000020327	RIF1	63	47.956	ENSOMEG00000021513	rif1	68	47.969	Oryzias_melastigma
ENSCHIG00000020327	RIF1	99	77.518	ENSOGAG00000006141	RIF1	99	77.518	Otolemur_garnettii
ENSCHIG00000020327	RIF1	100	98.256	ENSOARG00000008930	RIF1	100	98.256	Ovis_aries
ENSCHIG00000020327	RIF1	100	79.089	ENSPPAG00000023754	RIF1	100	79.089	Pan_paniscus
ENSCHIG00000020327	RIF1	100	81.562	ENSPPRG00000003618	RIF1	100	81.562	Panthera_pardus
ENSCHIG00000020327	RIF1	100	81.643	ENSPTIG00000020652	RIF1	100	81.643	Panthera_tigris_altaica
ENSCHIG00000020327	RIF1	100	79.170	ENSPTRG00000012534	RIF1	100	79.170	Pan_troglodytes
ENSCHIG00000020327	RIF1	100	79.194	ENSPANG00000008525	RIF1	100	79.194	Papio_anubis
ENSCHIG00000020327	RIF1	71	51.057	ENSPKIG00000004267	rif1	70	52.720	Paramormyrops_kingsleyae
ENSCHIG00000020327	RIF1	65	46.452	ENSPMGG00000016141	rif1	78	46.011	Periophthalmus_magnuspinnatus
ENSCHIG00000020327	RIF1	99	70.966	ENSPEMG00000000446	Rif1	99	70.966	Peromyscus_maniculatus_bairdii
ENSCHIG00000020327	RIF1	93	64.747	ENSPCIG00000009185	RIF1	99	59.141	Phascolarctos_cinereus
ENSCHIG00000020327	RIF1	60	50.725	ENSPFOG00000000554	-	68	50.725	Poecilia_formosa
ENSCHIG00000020327	RIF1	67	50.869	ENSPFOG00000017804	rif1	70	50.948	Poecilia_formosa
ENSCHIG00000020327	RIF1	67	50.475	ENSPLAG00000017945	rif1	73	50.475	Poecilia_latipinna
ENSCHIG00000020327	RIF1	57	49.086	ENSPMEG00000006897	-	67	49.086	Poecilia_mexicana
ENSCHIG00000020327	RIF1	70	49.084	ENSPREG00000018052	rif1	75	49.084	Poecilia_reticulata
ENSCHIG00000020327	RIF1	100	79.130	ENSPPYG00000012846	RIF1	100	79.130	Pongo_abelii
ENSCHIG00000020327	RIF1	83	78.788	ENSPCAG00000009032	RIF1	83	78.788	Procavia_capensis
ENSCHIG00000020327	RIF1	100	80.507	ENSPCOG00000027888	RIF1	100	80.507	Propithecus_coquereli
ENSCHIG00000020327	RIF1	93	89.858	ENSPVAG00000014276	RIF1	95	89.858	Pteropus_vampyrus
ENSCHIG00000020327	RIF1	80	46.440	ENSPNYG00000012940	rif1	69	49.209	Pundamilia_nyererei
ENSCHIG00000020327	RIF1	50	52.247	ENSPNAG00000016685	rif1	51	52.426	Pygocentrus_nattereri
ENSCHIG00000020327	RIF1	99	68.089	ENSRNOG00000054901	Rif1	100	68.089	Rattus_norvegicus
ENSCHIG00000020327	RIF1	100	78.387	ENSRBIG00000003704	RIF1	100	78.387	Rhinopithecus_bieti
ENSCHIG00000020327	RIF1	100	79.355	ENSRROG00000028206	RIF1	100	79.355	Rhinopithecus_roxellana
ENSCHIG00000020327	RIF1	96	85.263	ENSSBOG00000029530	RIF1	99	85.263	Saimiri_boliviensis_boliviensis
ENSCHIG00000020327	RIF1	99	59.912	ENSSHAG00000018552	RIF1	100	59.000	Sarcophilus_harrisii
ENSCHIG00000020327	RIF1	62	53.441	ENSSFOG00015021539	rif1	69	53.441	Scleropages_formosus
ENSCHIG00000020327	RIF1	63	49.612	ENSSMAG00000011704	rif1	63	49.096	Scophthalmus_maximus
ENSCHIG00000020327	RIF1	62	51.174	ENSSDUG00000015632	rif1	69	49.500	Seriola_dumerili
ENSCHIG00000020327	RIF1	50	50.839	ENSSLDG00000019531	rif1	52	49.318	Seriola_lalandi_dorsalis
ENSCHIG00000020327	RIF1	64	83.051	ENSSARG00000007161	-	64	83.051	Sorex_araneus
ENSCHIG00000020327	RIF1	94	60.291	ENSSPUG00000003062	RIF1	99	60.291	Sphenodon_punctatus
ENSCHIG00000020327	RIF1	50	55.922	ENSSPAG00000018359	rif1	75	59.259	Stegastes_partitus
ENSCHIG00000020327	RIF1	100	84.482	ENSSSCG00000016395	RIF1	100	84.482	Sus_scrofa
ENSCHIG00000020327	RIF1	63	50.366	ENSTRUG00000015808	rif1	69	49.443	Takifugu_rubripes
ENSCHIG00000020327	RIF1	65	48.965	ENSTNIG00000011538	rif1	69	48.965	Tetraodon_nigroviridis
ENSCHIG00000020327	RIF1	83	89.873	ENSTBEG00000016082	RIF1	82	89.873	Tupaia_belangeri
ENSCHIG00000020327	RIF1	100	88.597	ENSTTRG00000011190	RIF1	100	88.597	Tursiops_truncatus
ENSCHIG00000020327	RIF1	86	88.988	ENSUAMG00000026385	RIF1	97	88.988	Ursus_americanus
ENSCHIG00000020327	RIF1	100	82.614	ENSUMAG00000000337	RIF1	100	82.614	Ursus_maritimus
ENSCHIG00000020327	RIF1	100	82.869	ENSVPAG00000002162	RIF1	100	82.869	Vicugna_pacos
ENSCHIG00000020327	RIF1	100	80.581	ENSVVUG00000011293	RIF1	100	80.581	Vulpes_vulpes
ENSCHIG00000020327	RIF1	86	58.470	ENSXETG00000004530	rif1	86	58.470	Xenopus_tropicalis
ENSCHIG00000020327	RIF1	63	49.073	ENSXMAG00000000506	rif1	66	49.234	Xiphophorus_maculatus