EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000020359 (Gene tree)
Gene ID: 102173398
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 178190 bases
Position: chr13:15870215-16048404
Accession: 102173398
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000022364	Upf2	PF04050.14	1.3e-32	1	1
ENSCHIP00000022351	Upf2	PF04050.14	1.3e-32	1	1
ENSCHIP00000022364	MIF4G	PF02854.19	5.6e-76	1	3
ENSCHIP00000022364	MIF4G	PF02854.19	5.6e-76	2	3
ENSCHIP00000022364	MIF4G	PF02854.19	5.6e-76	3	3
ENSCHIP00000022351	MIF4G	PF02854.19	5.6e-76	1	3
ENSCHIP00000022351	MIF4G	PF02854.19	5.6e-76	2	3
ENSCHIP00000022351	MIF4G	PF02854.19	5.6e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000030224	UPF2-202	3834	XM_005687853	ENSCHIP00000022364	1271 (aa)	XP_005687910	UPI00029D5639
ENSCHIT00000030211	UPF2-201	3837	-	ENSCHIP00000022351	1272 (aa)	-	UPI000D190E7A

Gene Model

Click here to download ENSCHIG00000020359's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03013	RNA transport	KEGG
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000020359's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000020359	UPF2	100	97.720	ENSG00000151461	UPF2	100	97.720	Homo_sapiens
ENSCHIG00000020359	UPF2	99	78.935	ENSAPOG00000015837	UPF2	100	78.778	Acanthochromis_polyacanthus
ENSCHIG00000020359	UPF2	100	99.056	ENSAMEG00000004586	UPF2	100	99.056	Ailuropoda_melanoleuca
ENSCHIG00000020359	UPF2	99	83.047	ENSACIG00000018078	UPF2	100	82.969	Amphilophus_citrinellus
ENSCHIG00000020359	UPF2	100	83.073	ENSAOCG00000016766	UPF2	100	83.151	Amphiprion_ocellaris
ENSCHIG00000020359	UPF2	100	83.151	ENSAPEG00000019084	UPF2	100	83.229	Amphiprion_percula
ENSCHIG00000020359	UPF2	100	82.815	ENSATEG00000021677	UPF2	99	82.866	Anabas_testudineus
ENSCHIG00000020359	UPF2	100	87.186	ENSAPLG00000010287	UPF2	90	91.645	Anas_platyrhynchos
ENSCHIG00000020359	UPF2	100	92.604	ENSACAG00000009259	UPF2	100	92.604	Anolis_carolinensis
ENSCHIG00000020359	UPF2	100	87.529	ENSANAG00000028451	UPF2	100	86.353	Aotus_nancymaae
ENSCHIG00000020359	UPF2	100	81.357	ENSACLG00000012696	UPF2	100	83.229	Astatotilapia_calliptera
ENSCHIG00000020359	UPF2	99	83.099	ENSAMXG00000013700	UPF2	99	83.490	Astyanax_mexicanus
ENSCHIG00000020359	UPF2	100	99.921	ENSBTAG00000000288	UPF2	100	99.921	Bos_taurus
ENSCHIG00000020359	UPF2	100	97.642	ENSCJAG00000020685	UPF2	100	97.642	Callithrix_jacchus
ENSCHIG00000020359	UPF2	100	99.213	ENSCAFG00000004839	UPF2	100	99.213	Canis_familiaris
ENSCHIG00000020359	UPF2	99	96.769	ENSCAFG00020005882	UPF2	98	98.813	Canis_lupus_dingo
ENSCHIG00000020359	UPF2	100	97.640	ENSTSYG00000000935	UPF2	100	97.640	Carlito_syrichta
ENSCHIG00000020359	UPF2	91	87.349	ENSCAPG00000016658	UPF2	95	86.919	Cavia_aperea
ENSCHIG00000020359	UPF2	99	95.956	ENSCPOG00000008809	UPF2	99	95.956	Cavia_porcellus
ENSCHIG00000020359	UPF2	100	91.345	ENSCCAG00000035991	UPF2	100	91.667	Cebus_capucinus
ENSCHIG00000020359	UPF2	100	97.877	ENSCATG00000032679	UPF2	100	97.877	Cercocebus_atys
ENSCHIG00000020359	UPF2	100	97.718	ENSCLAG00000011434	UPF2	100	97.718	Chinchilla_lanigera
ENSCHIG00000020359	UPF2	100	97.956	ENSCSAG00000013372	UPF2	100	97.956	Chlorocebus_sabaeus
ENSCHIG00000020359	UPF2	87	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSCHIG00000020359	UPF2	99	93.459	ENSCPBG00000027823	UPF2	100	93.302	Chrysemys_picta_bellii
ENSCHIG00000020359	UPF2	79	48.963	ENSCSAVG00000007772	-	79	50.446	Ciona_savignyi
ENSCHIG00000020359	UPF2	99	91.484	ENSCANG00000040396	UPF2	100	92.132	Colobus_angolensis_palliatus
ENSCHIG00000020359	UPF2	100	97.954	ENSCGRG00001019347	Upf2	100	97.954	Cricetulus_griseus_chok1gshd
ENSCHIG00000020359	UPF2	100	97.954	ENSCGRG00000017993	Upf2	100	97.954	Cricetulus_griseus_crigri
ENSCHIG00000020359	UPF2	91	80.981	ENSCSEG00000003520	UPF2	91	80.532	Cynoglossus_semilaevis
ENSCHIG00000020359	UPF2	99	83.032	ENSCVAG00000006167	UPF2	100	82.561	Cyprinodon_variegatus
ENSCHIG00000020359	UPF2	100	98.584	ENSDNOG00000018160	UPF2	100	98.584	Dasypus_novemcinctus
ENSCHIG00000020359	UPF2	100	97.954	ENSDORG00000002478	Upf2	100	97.954	Dipodomys_ordii
ENSCHIG00000020359	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSCHIG00000020359	UPF2	69	68.358	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSCHIG00000020359	UPF2	100	98.741	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSCHIG00000020359	UPF2	100	98.820	ENSECAG00000017022	UPF2	100	98.820	Equus_caballus
ENSCHIG00000020359	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSCHIG00000020359	UPF2	99	81.875	ENSELUG00000012014	UPF2	100	82.284	Esox_lucius
ENSCHIG00000020359	UPF2	100	99.056	ENSFCAG00000005785	UPF2	100	99.056	Felis_catus
ENSCHIG00000020359	UPF2	100	94.020	ENSFALG00000001889	UPF2	98	94.020	Ficedula_albicollis
ENSCHIG00000020359	UPF2	100	97.561	ENSFDAG00000014348	UPF2	100	97.561	Fukomys_damarensis
ENSCHIG00000020359	UPF2	99	83.478	ENSFHEG00000009826	UPF2	99	83.135	Fundulus_heteroclitus
ENSCHIG00000020359	UPF2	91	83.851	ENSGMOG00000005557	UPF2	91	83.563	Gadus_morhua
ENSCHIG00000020359	UPF2	100	94.182	ENSGALG00000033772	UPF2	100	94.182	Gallus_gallus
ENSCHIG00000020359	UPF2	100	79.875	ENSGAFG00000020867	UPF2	100	81.903	Gambusia_affinis
ENSCHIG00000020359	UPF2	90	84.297	ENSGACG00000001080	UPF2	100	82.344	Gasterosteus_aculeatus
ENSCHIG00000020359	UPF2	100	93.706	ENSGAGG00000002700	UPF2	100	93.706	Gopherus_agassizii
ENSCHIG00000020359	UPF2	100	97.720	ENSGGOG00000001479	UPF2	100	97.720	Gorilla_gorilla
ENSCHIG00000020359	UPF2	100	81.201	ENSHBUG00000004249	UPF2	100	83.203	Haplochromis_burtoni
ENSCHIG00000020359	UPF2	99	86.693	ENSHGLG00000003822	-	99	85.433	Heterocephalus_glaber_female
ENSCHIG00000020359	UPF2	100	97.718	ENSHGLG00000015176	-	100	97.718	Heterocephalus_glaber_female
ENSCHIG00000020359	UPF2	99	94.484	ENSHGLG00100010036	UPF2	100	94.169	Heterocephalus_glaber_male
ENSCHIG00000020359	UPF2	100	80.730	ENSHCOG00000004025	UPF2	99	80.730	Hippocampus_comes
ENSCHIG00000020359	UPF2	100	81.825	ENSIPUG00000015524	UPF2	100	82.201	Ictalurus_punctatus
ENSCHIG00000020359	UPF2	100	98.505	ENSSTOG00000013075	UPF2	100	98.505	Ictidomys_tridecemlineatus
ENSCHIG00000020359	UPF2	100	97.010	ENSJJAG00000004913	Upf2	100	97.010	Jaculus_jaculus
ENSCHIG00000020359	UPF2	92	84.766	ENSKMAG00000001071	UPF2	92	84.569	Kryptolebias_marmoratus
ENSCHIG00000020359	UPF2	80	82.711	ENSLBEG00000000728	-	93	82.809	Labrus_bergylta
ENSCHIG00000020359	UPF2	99	81.250	ENSLBEG00000016394	-	99	83.191	Labrus_bergylta
ENSCHIG00000020359	UPF2	99	79.937	ENSLACG00000015945	UPF2	100	79.859	Latimeria_chalumnae
ENSCHIG00000020359	UPF2	99	86.604	ENSLOCG00000015698	UPF2	100	86.525	Lepisosteus_oculatus
ENSCHIG00000020359	UPF2	100	97.799	ENSMFAG00000043865	UPF2	100	97.799	Macaca_fascicularis
ENSCHIG00000020359	UPF2	100	97.799	ENSMMUG00000008241	UPF2	100	97.799	Macaca_mulatta
ENSCHIG00000020359	UPF2	81	97.073	ENSMNEG00000008062	UPF2	100	97.073	Macaca_nemestrina
ENSCHIG00000020359	UPF2	95	99.275	ENSMLEG00000036120	UPF2	100	99.275	Mandrillus_leucophaeus
ENSCHIG00000020359	UPF2	100	82.582	ENSMAMG00000018276	UPF2	100	82.710	Mastacembelus_armatus
ENSCHIG00000020359	UPF2	100	81.357	ENSMZEG00005021595	UPF2	100	83.229	Maylandia_zebra
ENSCHIG00000020359	UPF2	99	93.381	ENSMGAG00000004573	UPF2	99	93.381	Meleagris_gallopavo
ENSCHIG00000020359	UPF2	100	95.594	ENSMAUG00000016512	Upf2	100	95.594	Mesocricetus_auratus
ENSCHIG00000020359	UPF2	95	98.980	ENSMICG00000001716	UPF2	99	98.964	Microcebus_murinus
ENSCHIG00000020359	UPF2	100	97.010	ENSMOCG00000008263	Upf2	100	97.010	Microtus_ochrogaster
ENSCHIG00000020359	UPF2	90	83.116	ENSMMOG00000006528	UPF2	100	79.203	Mola_mola
ENSCHIG00000020359	UPF2	100	96.381	ENSMODG00000016794	UPF2	100	96.381	Monodelphis_domestica
ENSCHIG00000020359	UPF2	99	82.643	ENSMALG00000002663	UPF2	100	82.616	Monopterus_albus
ENSCHIG00000020359	UPF2	100	97.404	MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	Mus_caroli
ENSCHIG00000020359	UPF2	100	97.404	ENSMUSG00000043241	Upf2	100	97.404	Mus_musculus
ENSCHIG00000020359	UPF2	100	97.010	MGP_PahariEiJ_G0019217	Upf2	100	97.333	Mus_pahari
ENSCHIG00000020359	UPF2	100	97.640	MGP_SPRETEiJ_G0024075	Upf2	100	97.714	Mus_spretus
ENSCHIG00000020359	UPF2	100	98.899	ENSMPUG00000001064	UPF2	100	98.899	Mustela_putorius_furo
ENSCHIG00000020359	UPF2	99	98.036	ENSMLUG00000000228	UPF2	100	98.036	Myotis_lucifugus
ENSCHIG00000020359	UPF2	100	81.357	ENSNBRG00000013629	UPF2	100	83.229	Neolamprologus_brichardi
ENSCHIG00000020359	UPF2	100	97.720	ENSNLEG00000012058	UPF2	100	97.720	Nomascus_leucogenys
ENSCHIG00000020359	UPF2	56	97.409	ENSMEUG00000002180	-	54	97.409	Notamacropus_eugenii
ENSCHIG00000020359	UPF2	76	100.000	ENSOPRG00000006801	-	77	100.000	Ochotona_princeps
ENSCHIG00000020359	UPF2	100	97.404	ENSODEG00000001290	UPF2	100	97.404	Octodon_degus
ENSCHIG00000020359	UPF2	100	81.435	ENSONIG00000017991	UPF2	100	83.307	Oreochromis_niloticus
ENSCHIG00000020359	UPF2	99	97.414	ENSOCUG00000006230	UPF2	100	97.414	Oryctolagus_cuniculus
ENSCHIG00000020359	UPF2	100	81.245	ENSORLG00000017189	UPF2	100	82.293	Oryzias_latipes
ENSCHIG00000020359	UPF2	100	81.167	ENSORLG00020005969	UPF2	100	82.293	Oryzias_latipes_hni
ENSCHIG00000020359	UPF2	100	81.167	ENSORLG00015005713	UPF2	100	82.293	Oryzias_latipes_hsok
ENSCHIG00000020359	UPF2	99	78.488	ENSOMEG00000023420	UPF2	98	79.281	Oryzias_melastigma
ENSCHIG00000020359	UPF2	100	97.797	ENSOGAG00000005796	UPF2	100	97.797	Otolemur_garnettii
ENSCHIG00000020359	UPF2	100	99.843	ENSOARG00000014587	UPF2	100	99.843	Ovis_aries
ENSCHIG00000020359	UPF2	99	93.745	ENSPPAG00000037953	UPF2	100	94.488	Pan_paniscus
ENSCHIG00000020359	UPF2	100	99.056	ENSPPRG00000000690	UPF2	100	99.056	Panthera_pardus
ENSCHIG00000020359	UPF2	100	99.056	ENSPTIG00000008867	UPF2	100	99.056	Panthera_tigris_altaica
ENSCHIG00000020359	UPF2	100	97.720	ENSPTRG00000002291	UPF2	100	97.720	Pan_troglodytes
ENSCHIG00000020359	UPF2	100	97.877	ENSPANG00000023399	UPF2	100	97.877	Papio_anubis
ENSCHIG00000020359	UPF2	100	80.421	ENSPKIG00000025502	UPF2	100	81.123	Paramormyrops_kingsleyae
ENSCHIG00000020359	UPF2	59	93.094	ENSPSIG00000015158	UPF2	95	93.094	Pelodiscus_sinensis
ENSCHIG00000020359	UPF2	99	80.361	ENSPMGG00000005259	UPF2	100	81.304	Periophthalmus_magnuspinnatus
ENSCHIG00000020359	UPF2	93	95.918	ENSPEMG00000015731	Upf2	99	95.918	Peromyscus_maniculatus_bairdii
ENSCHIG00000020359	UPF2	100	95.987	ENSPCIG00000006656	UPF2	100	95.987	Phascolarctos_cinereus
ENSCHIG00000020359	UPF2	100	80.187	ENSPFOG00000017118	UPF2	100	82.371	Poecilia_formosa
ENSCHIG00000020359	UPF2	100	80.187	ENSPLAG00000005094	UPF2	100	82.371	Poecilia_latipinna
ENSCHIG00000020359	UPF2	100	80.187	ENSPMEG00000017009	UPF2	100	82.371	Poecilia_mexicana
ENSCHIG00000020359	UPF2	99	79.953	ENSPREG00000021880	UPF2	100	82.459	Poecilia_reticulata
ENSCHIG00000020359	UPF2	66	99.043	ENSPPYG00000002089	-	100	99.043	Pongo_abelii
ENSCHIG00000020359	UPF2	100	84.658	ENSPCAG00000000684	UPF2	100	84.658	Procavia_capensis
ENSCHIG00000020359	UPF2	99	95.035	ENSPCOG00000021656	UPF2	100	95.114	Propithecus_coquereli
ENSCHIG00000020359	UPF2	100	91.116	ENSPVAG00000017286	UPF2	100	91.116	Pteropus_vampyrus
ENSCHIG00000020359	UPF2	99	78.906	ENSPNYG00000017096	UPF2	100	80.781	Pundamilia_nyererei
ENSCHIG00000020359	UPF2	100	83.385	ENSPNAG00000009357	UPF2	100	83.931	Pygocentrus_nattereri
ENSCHIG00000020359	UPF2	99	91.523	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSCHIG00000020359	UPF2	99	96.769	ENSRBIG00000037780	UPF2	100	96.769	Rhinopithecus_bieti
ENSCHIG00000020359	UPF2	100	97.720	ENSRROG00000043547	UPF2	100	97.720	Rhinopithecus_roxellana
ENSCHIG00000020359	UPF2	100	97.484	ENSSBOG00000020012	UPF2	100	97.484	Saimiri_boliviensis_boliviensis
ENSCHIG00000020359	UPF2	100	81.684	ENSSFOG00015023788	upf2	100	83.242	Scleropages_formosus
ENSCHIG00000020359	UPF2	90	83.001	ENSSMAG00000007637	UPF2	100	79.286	Scophthalmus_maximus
ENSCHIG00000020359	UPF2	100	83.073	ENSSDUG00000017244	UPF2	99	83.307	Seriola_dumerili
ENSCHIG00000020359	UPF2	99	81.363	ENSSLDG00000016866	UPF2	100	81.676	Seriola_lalandi_dorsalis
ENSCHIG00000020359	UPF2	100	96.223	ENSSARG00000008615	UPF2	100	96.223	Sorex_araneus
ENSCHIG00000020359	UPF2	99	90.709	ENSSPUG00000014544	UPF2	99	90.709	Sphenodon_punctatus
ENSCHIG00000020359	UPF2	68	98.734	ENSSSCG00000011117	-	100	98.734	Sus_scrofa
ENSCHIG00000020359	UPF2	99	94.006	ENSTGUG00000002163	-	100	94.006	Taeniopygia_guttata
ENSCHIG00000020359	UPF2	100	82.087	ENSTRUG00000007519	UPF2	99	82.059	Takifugu_rubripes
ENSCHIG00000020359	UPF2	100	79.782	ENSTNIG00000004453	UPF2	100	79.361	Tetraodon_nigroviridis
ENSCHIG00000020359	UPF2	93	90.432	ENSTBEG00000012679	UPF2	93	90.771	Tupaia_belangeri
ENSCHIG00000020359	UPF2	100	99.135	ENSTTRG00000016388	UPF2	100	99.135	Tursiops_truncatus
ENSCHIG00000020359	UPF2	94	99.306	ENSUAMG00000023560	UPF2	100	99.149	Ursus_americanus
ENSCHIG00000020359	UPF2	100	99.213	ENSUMAG00000012953	UPF2	95	99.213	Ursus_maritimus
ENSCHIG00000020359	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSCHIG00000020359	UPF2	100	99.135	ENSVVUG00000006166	UPF2	100	99.135	Vulpes_vulpes
ENSCHIG00000020359	UPF2	100	82.782	ENSXETG00000033103	UPF2	100	81.193	Xenopus_tropicalis
ENSCHIG00000020359	UPF2	99	79.641	ENSXCOG00000011604	UPF2	100	82.031	Xiphophorus_couchianus
ENSCHIG00000020359	UPF2	100	80.031	ENSXMAG00000017209	UPF2	100	82.059	Xiphophorus_maculatus