EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000020611 (Gene tree)
Gene ID: 102173942
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 25252 bases
Position: chr11:2313163-2338414
Accession: 102173942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000022855	ResIII	PF04851.15	1.1e-25	1	2
ENSCHIP00000022855	ResIII	PF04851.15	1.1e-25	2	2
ENSCHIP00000022847	ResIII	PF04851.15	1.1e-25	1	2
ENSCHIP00000022847	ResIII	PF04851.15	1.1e-25	2	2
ENSCHIP00000022855	DEAD	PF00270.29	4e-52	1	2
ENSCHIP00000022855	DEAD	PF00270.29	4e-52	2	2
ENSCHIP00000022847	DEAD	PF00270.29	4.1e-52	1	2
ENSCHIP00000022847	DEAD	PF00270.29	4.1e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000030715	SNRNP200-202	6411	XM_018054846	ENSCHIP00000022855	2136 (aa)	XP_017910335	UPI0008462EFC
ENSCHIT00000030707	SNRNP200-201	6441	-	ENSCHIP00000022847	2146 (aa)	-	UPI000D192BC7

Gene Model

Click here to download ENSCHIG00000020611's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000020611's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000020611	SNRNP200	80	44.401	ENSCHIG00000023605	ASCC3	81	44.401

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000020611	SNRNP200	100	99.485	ENSG00000144028	SNRNP200	100	99.485	Homo_sapiens
ENSCHIG00000020611	SNRNP200	99	90.653	ENSAPOG00000010223	snrnp200	99	90.543	Acanthochromis_polyacanthus
ENSCHIG00000020611	SNRNP200	100	99.532	ENSAMEG00000008996	SNRNP200	100	99.532	Ailuropoda_melanoleuca
ENSCHIG00000020611	SNRNP200	97	90.150	ENSACIG00000001764	snrnp200	98	90.150	Amphilophus_citrinellus
ENSCHIG00000020611	SNRNP200	99	90.559	ENSAOCG00000024593	snrnp200	100	89.829	Amphiprion_ocellaris
ENSCHIG00000020611	SNRNP200	97	89.882	ENSAPEG00000012554	snrnp200	100	89.882	Amphiprion_percula
ENSCHIG00000020611	SNRNP200	99	90.512	ENSATEG00000022522	snrnp200	99	90.403	Anabas_testudineus
ENSCHIG00000020611	SNRNP200	99	97.501	ENSAPLG00000004313	SNRNP200	100	97.501	Anas_platyrhynchos
ENSCHIG00000020611	SNRNP200	99	97.555	ENSACAG00000000434	SNRNP200	100	97.555	Anolis_carolinensis
ENSCHIG00000020611	SNRNP200	100	94.916	ENSANAG00000036625	SNRNP200	100	95.336	Aotus_nancymaae
ENSCHIG00000020611	SNRNP200	99	90.418	ENSACLG00000011188	snrnp200	99	90.309	Astatotilapia_calliptera
ENSCHIG00000020611	SNRNP200	99	90.559	ENSAMXG00000005684	snrnp200	99	90.449	Astyanax_mexicanus
ENSCHIG00000020611	SNRNP200	100	99.625	ENSBTAG00000000848	SNRNP200	100	99.625	Bos_taurus
ENSCHIG00000020611	SNRNP200	100	99.438	ENSCJAG00000007514	SNRNP200	100	99.438	Callithrix_jacchus
ENSCHIG00000020611	SNRNP200	100	98.740	ENSCAFG00020019979	SNRNP200	100	99.475	Canis_lupus_dingo
ENSCHIG00000020611	SNRNP200	100	99.485	ENSTSYG00000010467	SNRNP200	100	99.485	Carlito_syrichta
ENSCHIG00000020611	SNRNP200	99	99.107	ENSCAPG00000017234	SNRNP200	99	99.107	Cavia_aperea
ENSCHIG00000020611	SNRNP200	100	99.391	ENSCPOG00000006776	SNRNP200	100	99.391	Cavia_porcellus
ENSCHIG00000020611	SNRNP200	100	99.438	ENSCCAG00000033962	SNRNP200	100	99.438	Cebus_capucinus
ENSCHIG00000020611	SNRNP200	100	99.485	ENSCATG00000015790	SNRNP200	100	99.485	Cercocebus_atys
ENSCHIG00000020611	SNRNP200	100	99.345	ENSCLAG00000004116	SNRNP200	100	99.345	Chinchilla_lanigera
ENSCHIG00000020611	SNRNP200	100	99.438	ENSCSAG00000017369	SNRNP200	100	99.438	Chlorocebus_sabaeus
ENSCHIG00000020611	SNRNP200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSCHIG00000020611	SNRNP200	100	97.569	ENSCPBG00000022571	SNRNP200	100	97.569	Chrysemys_picta_bellii
ENSCHIG00000020611	SNRNP200	99	76.460	ENSCING00000005082	-	99	76.600	Ciona_intestinalis
ENSCHIG00000020611	SNRNP200	100	93.975	ENSCANG00000033932	SNRNP200	100	99.403	Colobus_angolensis_palliatus
ENSCHIG00000020611	SNRNP200	100	99.438	ENSCGRG00001022610	Snrnp200	100	99.438	Cricetulus_griseus_chok1gshd
ENSCHIG00000020611	SNRNP200	100	98.878	ENSCGRG00000016472	Snrnp200	100	98.878	Cricetulus_griseus_crigri
ENSCHIG00000020611	SNRNP200	100	89.700	ENSCSEG00000016399	snrnp200	100	89.700	Cynoglossus_semilaevis
ENSCHIG00000020611	SNRNP200	100	85.393	ENSCVAG00000017631	snrnp200	99	85.393	Cyprinodon_variegatus
ENSCHIG00000020611	SNRNP200	100	90.122	ENSDARG00000077536	snrnp200	99	90.122	Danio_rerio
ENSCHIG00000020611	SNRNP200	100	98.127	ENSDNOG00000011227	SNRNP200	100	98.127	Dasypus_novemcinctus
ENSCHIG00000020611	SNRNP200	100	96.774	ENSDORG00000005861	Snrnp200	100	96.774	Dipodomys_ordii
ENSCHIG00000020611	SNRNP200	100	74.255	FBgn0263599	l(3)72Ab	99	74.162	Drosophila_melanogaster
ENSCHIG00000020611	SNRNP200	95	99.569	ENSETEG00000000162	SNRNP200	74	99.569	Echinops_telfairi
ENSCHIG00000020611	SNRNP200	83	81.345	ENSEBUG00000016524	snrnp200	95	81.345	Eptatretus_burgeri
ENSCHIG00000020611	SNRNP200	100	98.415	ENSEASG00005001884	SNRNP200	100	98.415	Equus_asinus_asinus
ENSCHIG00000020611	SNRNP200	100	99.532	ENSECAG00000019675	SNRNP200	100	99.532	Equus_caballus
ENSCHIG00000020611	SNRNP200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSCHIG00000020611	SNRNP200	99	90.606	ENSELUG00000018948	snrnp200	99	90.496	Esox_lucius
ENSCHIG00000020611	SNRNP200	100	99.579	ENSFCAG00000010699	SNRNP200	100	99.579	Felis_catus
ENSCHIG00000020611	SNRNP200	94	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSCHIG00000020611	SNRNP200	100	99.438	ENSFDAG00000004683	SNRNP200	100	99.438	Fukomys_damarensis
ENSCHIG00000020611	SNRNP200	100	87.547	ENSFHEG00000003786	snrnp200	99	87.547	Fundulus_heteroclitus
ENSCHIG00000020611	SNRNP200	100	89.439	ENSGMOG00000004881	snrnp200	99	89.393	Gadus_morhua
ENSCHIG00000020611	SNRNP200	100	87.781	ENSGAFG00000010807	snrnp200	99	87.781	Gambusia_affinis
ENSCHIG00000020611	SNRNP200	100	89.724	ENSGACG00000011474	snrnp200	99	89.631	Gasterosteus_aculeatus
ENSCHIG00000020611	SNRNP200	95	97.481	ENSGAGG00000016069	SNRNP200	99	97.481	Gopherus_agassizii
ENSCHIG00000020611	SNRNP200	100	99.485	ENSGGOG00000005174	SNRNP200	100	99.485	Gorilla_gorilla
ENSCHIG00000020611	SNRNP200	97	87.727	ENSHBUG00000011322	snrnp200	99	87.774	Haplochromis_burtoni
ENSCHIG00000020611	SNRNP200	100	99.485	ENSHGLG00000006654	SNRNP200	100	99.485	Heterocephalus_glaber_female
ENSCHIG00000020611	SNRNP200	100	99.485	ENSHGLG00100018594	SNRNP200	100	99.485	Heterocephalus_glaber_male
ENSCHIG00000020611	SNRNP200	100	99.438	ENSSTOG00000016351	SNRNP200	100	99.438	Ictidomys_tridecemlineatus
ENSCHIG00000020611	SNRNP200	100	99.345	ENSJJAG00000023659	Snrnp200	100	99.345	Jaculus_jaculus
ENSCHIG00000020611	SNRNP200	100	87.448	ENSKMAG00000003665	snrnp200	99	87.448	Kryptolebias_marmoratus
ENSCHIG00000020611	SNRNP200	100	90.122	ENSLBEG00000021585	snrnp200	99	90.122	Labrus_bergylta
ENSCHIG00000020611	SNRNP200	82	94.435	ENSLACG00000000226	SNRNP200	99	94.435	Latimeria_chalumnae
ENSCHIG00000020611	SNRNP200	100	92.088	ENSLOCG00000015198	snrnp200	99	92.088	Lepisosteus_oculatus
ENSCHIG00000020611	SNRNP200	100	99.251	ENSLAFG00000015626	SNRNP200	100	99.251	Loxodonta_africana
ENSCHIG00000020611	SNRNP200	100	99.438	ENSMFAG00000040174	SNRNP200	100	99.438	Macaca_fascicularis
ENSCHIG00000020611	SNRNP200	100	99.438	ENSMMUG00000023261	SNRNP200	100	99.438	Macaca_mulatta
ENSCHIG00000020611	SNRNP200	100	99.391	ENSMNEG00000032398	SNRNP200	100	99.391	Macaca_nemestrina
ENSCHIG00000020611	SNRNP200	100	99.485	ENSMLEG00000019083	SNRNP200	100	99.485	Mandrillus_leucophaeus
ENSCHIG00000020611	SNRNP200	100	89.986	ENSMAMG00000007851	snrnp200	99	89.939	Mastacembelus_armatus
ENSCHIG00000020611	SNRNP200	97	87.727	ENSMZEG00005010787	snrnp200	99	87.774	Maylandia_zebra
ENSCHIG00000020611	SNRNP200	97	97.049	ENSMGAG00000001831	SNRNP200	100	97.049	Meleagris_gallopavo
ENSCHIG00000020611	SNRNP200	100	99.391	ENSMAUG00000011825	Snrnp200	100	99.391	Mesocricetus_auratus
ENSCHIG00000020611	SNRNP200	100	99.438	ENSMICG00000004710	SNRNP200	100	99.438	Microcebus_murinus
ENSCHIG00000020611	SNRNP200	100	96.816	ENSMOCG00000011814	Snrnp200	100	96.816	Microtus_ochrogaster
ENSCHIG00000020611	SNRNP200	99	88.774	ENSMMOG00000014167	snrnp200	99	88.670	Mola_mola
ENSCHIG00000020611	SNRNP200	100	98.689	ENSMODG00000008475	SNRNP200	100	98.689	Monodelphis_domestica
ENSCHIG00000020611	SNRNP200	99	90.559	ENSMALG00000001973	snrnp200	99	90.449	Monopterus_albus
ENSCHIG00000020611	SNRNP200	100	99.204	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.204	Mus_caroli
ENSCHIG00000020611	SNRNP200	100	99.251	ENSMUSG00000003660	Snrnp200	100	99.251	Mus_musculus
ENSCHIG00000020611	SNRNP200	100	99.298	MGP_PahariEiJ_G0025695	Snrnp200	100	99.298	Mus_pahari
ENSCHIG00000020611	SNRNP200	100	99.251	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.251	Mus_spretus
ENSCHIG00000020611	SNRNP200	100	99.485	ENSMPUG00000008949	SNRNP200	100	99.485	Mustela_putorius_furo
ENSCHIG00000020611	SNRNP200	100	95.272	ENSMLUG00000027511	-	100	95.272	Myotis_lucifugus
ENSCHIG00000020611	SNRNP200	100	98.971	ENSMLUG00000010493	SNRNP200	100	98.971	Myotis_lucifugus
ENSCHIG00000020611	SNRNP200	100	99.485	ENSNGAG00000021993	Snrnp200	100	99.485	Nannospalax_galili
ENSCHIG00000020611	SNRNP200	90	90.261	ENSNBRG00000017960	snrnp200	98	90.261	Neolamprologus_brichardi
ENSCHIG00000020611	SNRNP200	100	94.893	ENSNLEG00000000025	SNRNP200	100	95.441	Nomascus_leucogenys
ENSCHIG00000020611	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSCHIG00000020611	SNRNP200	100	95.552	ENSOPRG00000015464	SNRNP200	100	95.552	Ochotona_princeps
ENSCHIG00000020611	SNRNP200	100	99.345	ENSODEG00000008366	SNRNP200	100	99.345	Octodon_degus
ENSCHIG00000020611	SNRNP200	99	90.418	ENSONIG00000010714	snrnp200	99	90.309	Oreochromis_niloticus
ENSCHIG00000020611	SNRNP200	100	99.345	ENSOCUG00000009864	SNRNP200	100	99.345	Oryctolagus_cuniculus
ENSCHIG00000020611	SNRNP200	100	89.981	ENSORLG00000012286	snrnp200	100	89.981	Oryzias_latipes
ENSCHIG00000020611	SNRNP200	100	90.028	ENSORLG00020004648	snrnp200	100	90.028	Oryzias_latipes_hni
ENSCHIG00000020611	SNRNP200	100	89.981	ENSORLG00015019114	snrnp200	100	89.981	Oryzias_latipes_hsok
ENSCHIG00000020611	SNRNP200	99	90.230	ENSOMEG00000011834	snrnp200	99	90.122	Oryzias_melastigma
ENSCHIG00000020611	SNRNP200	100	99.485	ENSOGAG00000006879	SNRNP200	100	99.485	Otolemur_garnettii
ENSCHIG00000020611	SNRNP200	100	98.877	ENSOARG00000013949	SNRNP200	100	98.877	Ovis_aries
ENSCHIG00000020611	SNRNP200	100	99.485	ENSPPAG00000041559	SNRNP200	100	99.485	Pan_paniscus
ENSCHIG00000020611	SNRNP200	100	99.579	ENSPPRG00000004435	SNRNP200	100	99.579	Panthera_pardus
ENSCHIG00000020611	SNRNP200	100	99.110	ENSPTIG00000006380	SNRNP200	100	99.110	Panthera_tigris_altaica
ENSCHIG00000020611	SNRNP200	100	99.485	ENSPTRG00000012230	SNRNP200	100	99.485	Pan_troglodytes
ENSCHIG00000020611	SNRNP200	100	99.532	ENSPANG00000006017	SNRNP200	100	99.532	Papio_anubis
ENSCHIG00000020611	SNRNP200	100	90.824	ENSPKIG00000014762	snrnp200	99	90.824	Paramormyrops_kingsleyae
ENSCHIG00000020611	SNRNP200	100	96.490	ENSPSIG00000008580	SNRNP200	100	96.490	Pelodiscus_sinensis
ENSCHIG00000020611	SNRNP200	100	98.689	ENSPCIG00000023050	SNRNP200	100	98.689	Phascolarctos_cinereus
ENSCHIG00000020611	SNRNP200	100	90.126	ENSPFOG00000015110	snrnp200	99	90.126	Poecilia_formosa
ENSCHIG00000020611	SNRNP200	97	90.000	ENSPLAG00000006711	snrnp200	99	90.000	Poecilia_latipinna
ENSCHIG00000020611	SNRNP200	97	89.945	ENSPMEG00000021166	snrnp200	99	89.945	Poecilia_mexicana
ENSCHIG00000020611	SNRNP200	100	90.215	ENSPREG00000008875	snrnp200	99	90.215	Poecilia_reticulata
ENSCHIG00000020611	SNRNP200	100	99.485	ENSPPYG00000012068	SNRNP200	100	99.485	Pongo_abelii
ENSCHIG00000020611	SNRNP200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
ENSCHIG00000020611	SNRNP200	100	99.485	ENSPCOG00000024608	SNRNP200	100	99.485	Propithecus_coquereli
ENSCHIG00000020611	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSCHIG00000020611	SNRNP200	99	85.902	ENSPNYG00000017476	snrnp200	99	85.808	Pundamilia_nyererei
ENSCHIG00000020611	SNRNP200	100	85.861	ENSPNAG00000010998	snrnp200	99	85.861	Pygocentrus_nattereri
ENSCHIG00000020611	SNRNP200	100	99.391	ENSRNOG00000012157	Snrnp200	100	99.391	Rattus_norvegicus
ENSCHIG00000020611	SNRNP200	100	99.485	ENSRBIG00000044690	-	100	99.485	Rhinopithecus_bieti
ENSCHIG00000020611	SNRNP200	100	99.485	ENSRROG00000037952	-	100	99.485	Rhinopithecus_roxellana
ENSCHIG00000020611	SNRNP200	100	99.438	ENSSBOG00000035471	SNRNP200	100	99.438	Saimiri_boliviensis_boliviensis
ENSCHIG00000020611	SNRNP200	97	98.597	ENSSHAG00000000758	SNRNP200	100	98.597	Sarcophilus_harrisii
ENSCHIG00000020611	SNRNP200	99	91.310	ENSSFOG00015018826	snrnp200	99	91.199	Scleropages_formosus
ENSCHIG00000020611	SNRNP200	99	90.324	ENSSMAG00000005463	snrnp200	99	90.215	Scophthalmus_maximus
ENSCHIG00000020611	SNRNP200	99	90.512	ENSSDUG00000021410	snrnp200	99	90.403	Seriola_dumerili
ENSCHIG00000020611	SNRNP200	99	90.465	ENSSLDG00000010884	snrnp200	99	90.356	Seriola_lalandi_dorsalis
ENSCHIG00000020611	SNRNP200	95	99.196	ENSSARG00000010728	SNRNP200	96	99.196	Sorex_araneus
ENSCHIG00000020611	SNRNP200	100	97.378	ENSSPUG00000003726	-	100	97.378	Sphenodon_punctatus
ENSCHIG00000020611	SNRNP200	99	90.559	ENSSPAG00000001842	snrnp200	99	90.449	Stegastes_partitus
ENSCHIG00000020611	SNRNP200	100	99.391	ENSSSCG00000008127	SNRNP200	100	99.391	Sus_scrofa
ENSCHIG00000020611	SNRNP200	99	87.853	ENSTGUG00000014475	-	100	87.853	Taeniopygia_guttata
ENSCHIG00000020611	SNRNP200	99	90.277	ENSTRUG00000001307	snrnp200	99	90.169	Takifugu_rubripes
ENSCHIG00000020611	SNRNP200	100	85.724	ENSTNIG00000004320	snrnp200	100	85.724	Tetraodon_nigroviridis
ENSCHIG00000020611	SNRNP200	82	100.000	ENSTBEG00000003329	-	67	100.000	Tupaia_belangeri
ENSCHIG00000020611	SNRNP200	100	99.204	ENSTTRG00000004983	SNRNP200	100	99.204	Tursiops_truncatus
ENSCHIG00000020611	SNRNP200	75	92.829	ENSUAMG00000008395	-	95	92.829	Ursus_americanus
ENSCHIG00000020611	SNRNP200	100	99.579	ENSUMAG00000012385	SNRNP200	100	99.579	Ursus_maritimus
ENSCHIG00000020611	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSCHIG00000020611	SNRNP200	100	99.346	ENSVVUG00000026247	SNRNP200	100	99.346	Vulpes_vulpes
ENSCHIG00000020611	SNRNP200	100	94.250	ENSXETG00000001243	snrnp200	100	94.250	Xenopus_tropicalis
ENSCHIG00000020611	SNRNP200	97	90.257	ENSXMAG00000002058	snrnp200	98	90.257	Xiphophorus_maculatus