EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000020851 (Gene tree)
Gene ID: 102171016
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 161101 bases
Position: chr2:74438414-74599514
Accession: 102171016
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000023207	R3H	PF01424.22	6.4e-11	1	1
ENSCHIP00000023163	R3H	PF01424.22	6.9e-11	1	1
ENSCHIP00000023182	R3H	PF01424.22	7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000031067	R3HDM1-203	3683	XM_013969947	ENSCHIP00000023207	1096 (aa)	XP_013825401	UPI0008463ABE
ENSCHIT00000031023	R3HDM1-201	3785	XM_013969934	ENSCHIP00000023163	1130 (aa)	XP_013825388	UPI0006B111B5
ENSCHIT00000031043	R3HDM1-202	3734	XM_018062295	ENSCHIP00000023182	1113 (aa)	XP_017917784	UPI0008465C11

Gene Model

Click here to download ENSCHIG00000020851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000020851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000020851	R3HDM1	70	48.306	ENSCHIG00000014318	ARPP21	95	48.055
ENSCHIG00000020851	R3HDM1	99	48.877	ENSCHIG00000014022	R3HDM2	96	60.204

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000020851	R3HDM1	100	94.107	ENSG00000048991	R3HDM1	100	93.835	Homo_sapiens
ENSCHIG00000020851	R3HDM1	89	50.185	ENSAPOG00000020850	r3hdm1	97	49.396	Acanthochromis_polyacanthus
ENSCHIG00000020851	R3HDM1	100	95.739	ENSAMEG00000014886	R3HDM1	100	95.739	Ailuropoda_melanoleuca
ENSCHIG00000020851	R3HDM1	89	49.029	ENSAOCG00000005192	r3hdm1	99	48.699	Amphiprion_ocellaris
ENSCHIG00000020851	R3HDM1	89	46.679	ENSAPEG00000016108	r3hdm1	99	46.704	Amphiprion_percula
ENSCHIG00000020851	R3HDM1	89	45.822	ENSATEG00000000232	r3hdm1	99	46.319	Anabas_testudineus
ENSCHIG00000020851	R3HDM1	100	79.382	ENSAPLG00000015231	R3HDM1	100	79.382	Anas_platyrhynchos
ENSCHIG00000020851	R3HDM1	100	80.563	ENSACAG00000001676	R3HDM1	100	80.739	Anolis_carolinensis
ENSCHIG00000020851	R3HDM1	100	94.203	ENSANAG00000035334	R3HDM1	100	94.112	Aotus_nancymaae
ENSCHIG00000020851	R3HDM1	79	50.813	ENSACLG00000027282	r3hdm1	94	50.379	Astatotilapia_calliptera
ENSCHIG00000020851	R3HDM1	100	56.049	ENSAMXG00000003536	r3hdm1	100	62.005	Astyanax_mexicanus
ENSCHIG00000020851	R3HDM1	52	55.725	ENSAMXG00000020587	arpp21	84	59.350	Astyanax_mexicanus
ENSCHIG00000020851	R3HDM1	93	73.141	ENSAMXG00000012861	R3HDM1	100	73.077	Astyanax_mexicanus
ENSCHIG00000020851	R3HDM1	100	99.293	ENSBTAG00000013302	R3HDM1	100	99.293	Bos_taurus
ENSCHIG00000020851	R3HDM1	100	94.011	ENSCJAG00000011718	R3HDM1	100	94.011	Callithrix_jacchus
ENSCHIG00000020851	R3HDM1	100	96.011	ENSCAFG00000005075	R3HDM1	100	96.011	Canis_familiaris
ENSCHIG00000020851	R3HDM1	100	95.920	ENSCAFG00020016119	R3HDM1	100	95.920	Canis_lupus_dingo
ENSCHIG00000020851	R3HDM1	100	92.186	ENSCPOG00000012784	R3HDM1	100	92.098	Cavia_porcellus
ENSCHIG00000020851	R3HDM1	100	93.835	ENSCCAG00000027199	R3HDM1	100	93.744	Cebus_capucinus
ENSCHIG00000020851	R3HDM1	100	95.028	ENSCATG00000023642	R3HDM1	100	93.580	Cercocebus_atys
ENSCHIG00000020851	R3HDM1	100	91.396	ENSCLAG00000007962	R3HDM1	100	91.396	Chinchilla_lanigera
ENSCHIG00000020851	R3HDM1	100	93.755	ENSCSAG00000016356	R3HDM1	100	93.492	Chlorocebus_sabaeus
ENSCHIG00000020851	R3HDM1	87	83.791	ENSCHOG00000013638	R3HDM1	91	83.516	Choloepus_hoffmanni
ENSCHIG00000020851	R3HDM1	92	78.872	ENSCPBG00000009645	R3HDM1	100	90.406	Chrysemys_picta_bellii
ENSCHIG00000020851	R3HDM1	100	93.841	ENSCANG00000034748	R3HDM1	100	93.569	Colobus_angolensis_palliatus
ENSCHIG00000020851	R3HDM1	99	91.182	ENSCGRG00001012357	R3hdm1	97	91.093	Cricetulus_griseus_chok1gshd
ENSCHIG00000020851	R3HDM1	100	91.125	ENSCGRG00000012080	R3hdm1	100	91.037	Cricetulus_griseus_crigri
ENSCHIG00000020851	R3HDM1	89	43.251	ENSCSEG00000008944	r3hdm1	89	55.902	Cynoglossus_semilaevis
ENSCHIG00000020851	R3HDM1	89	48.833	ENSCVAG00000007582	r3hdm1	99	48.221	Cyprinodon_variegatus
ENSCHIG00000020851	R3HDM1	65	37.995	ENSDARG00000061081	arpp21	71	40.816	Danio_rerio
ENSCHIG00000020851	R3HDM1	100	90.942	ENSDNOG00000000771	R3HDM1	100	91.033	Dasypus_novemcinctus
ENSCHIG00000020851	R3HDM1	100	82.621	ENSETEG00000013606	R3HDM1	100	83.076	Echinops_telfairi
ENSCHIG00000020851	R3HDM1	62	43.557	ENSEBUG00000014746	arpp21	97	43.359	Eptatretus_burgeri
ENSCHIG00000020851	R3HDM1	100	95.814	ENSEASG00005007392	R3HDM1	100	95.814	Equus_asinus_asinus
ENSCHIG00000020851	R3HDM1	100	95.731	ENSECAG00000019114	R3HDM1	100	97.291	Equus_caballus
ENSCHIG00000020851	R3HDM1	86	88.839	ENSEEUG00000012589	R3HDM1	86	88.839	Erinaceus_europaeus
ENSCHIG00000020851	R3HDM1	93	50.453	ENSELUG00000014413	r3hdm1	100	50.940	Esox_lucius
ENSCHIG00000020851	R3HDM1	94	55.586	ENSELUG00000004909	R3HDM1	99	55.347	Esox_lucius
ENSCHIG00000020851	R3HDM1	100	96.237	ENSFCAG00000027113	R3HDM1	100	97.783	Felis_catus
ENSCHIG00000020851	R3HDM1	74	73.388	ENSFALG00000013731	R3HDM1	93	70.487	Ficedula_albicollis
ENSCHIG00000020851	R3HDM1	100	91.308	ENSFDAG00000016478	R3HDM1	99	94.649	Fukomys_damarensis
ENSCHIG00000020851	R3HDM1	89	48.289	ENSFHEG00000018713	r3hdm1	100	47.572	Fundulus_heteroclitus
ENSCHIG00000020851	R3HDM1	59	69.565	ENSGMOG00000006042	-	74	69.348	Gadus_morhua
ENSCHIG00000020851	R3HDM1	100	60.578	ENSGALG00000012246	R3HDM1	99	89.931	Gallus_gallus
ENSCHIG00000020851	R3HDM1	79	49.077	ENSGAFG00000006203	r3hdm1	94	50.000	Gambusia_affinis
ENSCHIG00000020851	R3HDM1	87	49.623	ENSGACG00000014925	r3hdm1	99	49.476	Gasterosteus_aculeatus
ENSCHIG00000020851	R3HDM1	100	78.727	ENSGAGG00000007840	R3HDM1	100	78.182	Gopherus_agassizii
ENSCHIG00000020851	R3HDM1	100	93.835	ENSGGOG00000008156	R3HDM1	100	93.563	Gorilla_gorilla
ENSCHIG00000020851	R3HDM1	100	92.159	ENSHGLG00000015718	R3HDM1	99	94.834	Heterocephalus_glaber_female
ENSCHIG00000020851	R3HDM1	100	91.894	ENSHGLG00100003184	-	100	91.806	Heterocephalus_glaber_male
ENSCHIG00000020851	R3HDM1	100	69.455	ENSHGLG00100015374	-	100	69.455	Heterocephalus_glaber_male
ENSCHIG00000020851	R3HDM1	79	45.021	ENSHCOG00000013366	r3hdm1	88	59.250	Hippocampus_comes
ENSCHIG00000020851	R3HDM1	82	66.826	ENSIPUG00000001676	R3HDM1	99	66.746	Ictalurus_punctatus
ENSCHIG00000020851	R3HDM1	64	34.113	ENSIPUG00000020552	arpp21	85	32.377	Ictalurus_punctatus
ENSCHIG00000020851	R3HDM1	85	67.169	ENSIPUG00000013629	r3hdm1	95	69.132	Ictalurus_punctatus
ENSCHIG00000020851	R3HDM1	100	94.016	ENSSTOG00000007572	R3HDM1	99	95.756	Ictidomys_tridecemlineatus
ENSCHIG00000020851	R3HDM1	95	73.732	ENSLACG00000005334	R3HDM1	100	74.361	Latimeria_chalumnae
ENSCHIG00000020851	R3HDM1	100	67.113	ENSLOCG00000001641	r3hdm1	100	66.845	Lepisosteus_oculatus
ENSCHIG00000020851	R3HDM1	100	94.366	ENSLAFG00000009065	R3HDM1	100	94.190	Loxodonta_africana
ENSCHIG00000020851	R3HDM1	100	94.016	ENSMFAG00000030331	R3HDM1	100	95.813	Macaca_fascicularis
ENSCHIG00000020851	R3HDM1	100	93.835	ENSMMUG00000009844	R3HDM1	100	93.563	Macaca_mulatta
ENSCHIG00000020851	R3HDM1	100	93.926	ENSMNEG00000027793	R3HDM1	100	95.813	Macaca_nemestrina
ENSCHIG00000020851	R3HDM1	100	94.107	ENSMLEG00000043189	R3HDM1	100	93.835	Mandrillus_leucophaeus
ENSCHIG00000020851	R3HDM1	89	49.628	ENSMAMG00000004532	r3hdm1	99	49.162	Mastacembelus_armatus
ENSCHIG00000020851	R3HDM1	89	49.516	ENSMZEG00005003157	r3hdm1	93	57.663	Maylandia_zebra
ENSCHIG00000020851	R3HDM1	100	79.091	ENSMGAG00000012461	R3HDM1	100	78.909	Meleagris_gallopavo
ENSCHIG00000020851	R3HDM1	100	90.535	ENSMAUG00000010315	R3hdm1	100	90.698	Mesocricetus_auratus
ENSCHIG00000020851	R3HDM1	96	72.854	ENSMICG00000042655	-	100	89.027	Microcebus_murinus
ENSCHIG00000020851	R3HDM1	100	93.394	ENSMICG00000005900	-	100	93.394	Microcebus_murinus
ENSCHIG00000020851	R3HDM1	90	81.071	ENSMODG00000000923	R3HDM1	97	81.071	Monodelphis_domestica
ENSCHIG00000020851	R3HDM1	99	46.533	ENSMALG00000009000	r3hdm1	100	46.432	Monopterus_albus
ENSCHIG00000020851	R3HDM1	100	89.965	MGP_CAROLIEiJ_G0014543	R3hdm1	99	93.173	Mus_caroli
ENSCHIG00000020851	R3HDM1	100	89.965	ENSMUSG00000056211	R3hdm1	99	93.173	Mus_musculus
ENSCHIG00000020851	R3HDM1	100	89.877	MGP_PahariEiJ_G0027779	R3hdm1	99	92.620	Mus_pahari
ENSCHIG00000020851	R3HDM1	100	90.141	MGP_SPRETEiJ_G0015350	R3hdm1	99	93.358	Mus_spretus
ENSCHIG00000020851	R3HDM1	100	96.094	ENSMPUG00000002412	R3HDM1	100	96.094	Mustela_putorius_furo
ENSCHIG00000020851	R3HDM1	100	94.304	ENSMLUG00000013824	R3HDM1	100	94.123	Myotis_lucifugus
ENSCHIG00000020851	R3HDM1	100	93.926	ENSNLEG00000008622	R3HDM1	100	93.744	Nomascus_leucogenys
ENSCHIG00000020851	R3HDM1	89	72.848	ENSMEUG00000011784	R3HDM1	100	72.746	Notamacropus_eugenii
ENSCHIG00000020851	R3HDM1	100	91.293	ENSODEG00000008607	R3HDM1	100	91.029	Octodon_degus
ENSCHIG00000020851	R3HDM1	95	48.959	ENSONIG00000012017	r3hdm1	98	48.384	Oreochromis_niloticus
ENSCHIG00000020851	R3HDM1	100	82.321	ENSOANG00000007987	R3HDM1	100	82.321	Ornithorhynchus_anatinus
ENSCHIG00000020851	R3HDM1	89	92.683	ENSOCUG00000017366	R3HDM1	98	92.581	Oryctolagus_cuniculus
ENSCHIG00000020851	R3HDM1	89	45.728	ENSORLG00000004297	r3hdm1	99	46.635	Oryzias_latipes
ENSCHIG00000020851	R3HDM1	89	46.086	ENSORLG00015017355	r3hdm1	99	46.588	Oryzias_latipes_hsok
ENSCHIG00000020851	R3HDM1	100	93.091	ENSOGAG00000003136	R3HDM1	100	93.091	Otolemur_garnettii
ENSCHIG00000020851	R3HDM1	100	99.544	ENSOARG00000010788	R3HDM1	100	99.544	Ovis_aries
ENSCHIG00000020851	R3HDM1	100	93.937	ENSPPAG00000027858	R3HDM1	100	93.665	Pan_paniscus
ENSCHIG00000020851	R3HDM1	100	95.814	ENSPPRG00000002626	R3HDM1	100	95.905	Panthera_pardus
ENSCHIG00000020851	R3HDM1	100	95.814	ENSPTIG00000016581	R3HDM1	100	95.905	Panthera_tigris_altaica
ENSCHIG00000020851	R3HDM1	100	93.846	ENSPTRG00000012494	R3HDM1	100	93.575	Pan_troglodytes
ENSCHIG00000020851	R3HDM1	100	94.016	ENSPANG00000026448	R3HDM1	100	93.744	Papio_anubis
ENSCHIG00000020851	R3HDM1	84	75.949	ENSPKIG00000004328	r3hdm1	91	76.190	Paramormyrops_kingsleyae
ENSCHIG00000020851	R3HDM1	100	78.909	ENSPSIG00000012915	R3HDM1	100	78.818	Pelodiscus_sinensis
ENSCHIG00000020851	R3HDM1	100	91.285	ENSPEMG00000015187	R3hdm1	100	91.197	Peromyscus_maniculatus_bairdii
ENSCHIG00000020851	R3HDM1	88	43.954	ENSPMAG00000003369	-	98	43.996	Petromyzon_marinus
ENSCHIG00000020851	R3HDM1	100	84.609	ENSPCIG00000002491	R3HDM1	100	89.706	Phascolarctos_cinereus
ENSCHIG00000020851	R3HDM1	89	48.926	ENSPFOG00000015036	r3hdm1	99	48.221	Poecilia_formosa
ENSCHIG00000020851	R3HDM1	80	49.731	ENSPLAG00000018042	r3hdm1	95	49.623	Poecilia_latipinna
ENSCHIG00000020851	R3HDM1	80	50.214	ENSPMEG00000023947	r3hdm1	95	49.785	Poecilia_mexicana
ENSCHIG00000020851	R3HDM1	89	48.828	ENSPREG00000007902	r3hdm1	88	62.053	Poecilia_reticulata
ENSCHIG00000020851	R3HDM1	100	92.301	ENSPPYG00000012815	R3HDM1	100	91.938	Pongo_abelii
ENSCHIG00000020851	R3HDM1	94	91.824	ENSPCAG00000006208	R3HDM1	93	91.824	Procavia_capensis
ENSCHIG00000020851	R3HDM1	100	91.403	ENSPCOG00000012698	R3HDM1	100	92.508	Propithecus_coquereli
ENSCHIG00000020851	R3HDM1	100	86.244	ENSPVAG00000006098	R3HDM1	100	86.244	Pteropus_vampyrus
ENSCHIG00000020851	R3HDM1	100	56.643	ENSPNAG00000013952	r3hdm1	100	62.911	Pygocentrus_nattereri
ENSCHIG00000020851	R3HDM1	83	76.923	ENSPNAG00000005436	R3HDM1	99	76.849	Pygocentrus_nattereri
ENSCHIG00000020851	R3HDM1	53	58.000	ENSPNAG00000004162	arpp21	57	58.000	Pygocentrus_nattereri
ENSCHIG00000020851	R3HDM1	100	89.789	ENSRNOG00000004099	R3hdm1	100	89.771	Rattus_norvegicus
ENSCHIG00000020851	R3HDM1	100	92.760	ENSRBIG00000033317	R3HDM1	100	97.786	Rhinopithecus_bieti
ENSCHIG00000020851	R3HDM1	100	93.931	ENSRROG00000034534	R3HDM1	100	93.659	Rhinopithecus_roxellana
ENSCHIG00000020851	R3HDM1	100	93.563	ENSSBOG00000020389	R3HDM1	100	93.472	Saimiri_boliviensis_boliviensis
ENSCHIG00000020851	R3HDM1	100	85.155	ENSSHAG00000016999	R3HDM1	100	85.155	Sarcophilus_harrisii
ENSCHIG00000020851	R3HDM1	100	56.875	ENSSFOG00015019851	-	99	57.815	Scleropages_formosus
ENSCHIG00000020851	R3HDM1	93	70.602	ENSSFOG00015014134	r3hdm1	100	70.531	Scleropages_formosus
ENSCHIG00000020851	R3HDM1	99	45.034	ENSSMAG00000001669	r3hdm1	99	44.905	Scophthalmus_maximus
ENSCHIG00000020851	R3HDM1	89	47.479	ENSSDUG00000010749	r3hdm1	99	47.897	Seriola_dumerili
ENSCHIG00000020851	R3HDM1	99	47.318	ENSSLDG00000004499	r3hdm1	99	47.263	Seriola_lalandi_dorsalis
ENSCHIG00000020851	R3HDM1	69	83.389	ENSSARG00000000352	-	69	83.389	Sorex_araneus
ENSCHIG00000020851	R3HDM1	100	80.909	ENSSPUG00000004167	R3HDM1	100	80.636	Sphenodon_punctatus
ENSCHIG00000020851	R3HDM1	89	50.000	ENSSPAG00000004648	r3hdm1	99	49.605	Stegastes_partitus
ENSCHIG00000020851	R3HDM1	100	96.598	ENSSSCG00000015692	R3HDM1	100	96.598	Sus_scrofa
ENSCHIG00000020851	R3HDM1	100	74.071	ENSTGUG00000011750	R3HDM1	100	74.071	Taeniopygia_guttata
ENSCHIG00000020851	R3HDM1	79	47.747	ENSTRUG00000011654	r3hdm1	93	46.983	Takifugu_rubripes
ENSCHIG00000020851	R3HDM1	86	46.115	ENSTNIG00000010362	r3hdm1	95	46.865	Tetraodon_nigroviridis
ENSCHIG00000020851	R3HDM1	100	89.426	ENSTTRG00000003935	R3HDM1	100	89.426	Tursiops_truncatus
ENSCHIG00000020851	R3HDM1	70	96.000	ENSUAMG00000024806	R3HDM1	99	95.756	Ursus_americanus
ENSCHIG00000020851	R3HDM1	100	91.371	ENSUMAG00000005552	R3HDM1	100	92.974	Ursus_maritimus
ENSCHIG00000020851	R3HDM1	93	94.737	ENSVPAG00000007333	R3HDM1	93	94.737	Vicugna_pacos
ENSCHIG00000020851	R3HDM1	100	95.863	ENSVVUG00000006457	R3HDM1	100	95.863	Vulpes_vulpes
ENSCHIG00000020851	R3HDM1	89	68.219	ENSXETG00000019330	r3hdm1	100	67.915	Xenopus_tropicalis
ENSCHIG00000020851	R3HDM1	67	50.453	ENSXCOG00000017448	r3hdm1	94	50.065	Xiphophorus_couchianus
ENSCHIG00000020851	R3HDM1	89	48.276	ENSXMAG00000007885	r3hdm1	99	47.802	Xiphophorus_maculatus