EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000020884 (Gene tree)
Gene ID: 102188918
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 34284 bases
Position: chr26:16552971-16587254
Accession: 102188918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000023234	TruB_N	PF01509.18	4.1e-51	1	1
ENSCHIP00000023225	TruB_N	PF01509.18	6.9e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000031094	TRUB1-202	1005	-	ENSCHIP00000023234	334 (aa)	-	UPI000D18DB3C
ENSCHIT00000031085	TRUB1-201	4964	XM_018041655	ENSCHIP00000023225	351 (aa)	XP_017897144	UPI000847C11A

Gene Model

Click here to download ENSCHIG00000020884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000020884's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000020884	TRUB1	75	31.271	ENSCHIG00000021160	TRUB2	87	31.271

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000020884	TRUB1	99	92.000	ENSG00000165832	TRUB1	98	92.398	Homo_sapiens
ENSCHIG00000020884	TRUB1	73	68.980	ENSAPOG00000020565	trub1	89	68.699	Acanthochromis_polyacanthus
ENSCHIG00000020884	TRUB1	94	94.294	ENSAMEG00000014931	TRUB1	98	92.733	Ailuropoda_melanoleuca
ENSCHIG00000020884	TRUB1	85	57.746	ENSACIG00000003060	trub1	94	57.746	Amphilophus_citrinellus
ENSCHIG00000020884	TRUB1	73	68.980	ENSAOCG00000017188	trub1	89	68.699	Amphiprion_ocellaris
ENSCHIG00000020884	TRUB1	74	68.293	ENSAPEG00000015209	trub1	89	68.293	Amphiprion_percula
ENSCHIG00000020884	TRUB1	72	69.295	ENSATEG00000023291	trub1	86	69.295	Anabas_testudineus
ENSCHIG00000020884	TRUB1	81	75.735	ENSAPLG00000006808	TRUB1	97	75.735	Anas_platyrhynchos
ENSCHIG00000020884	TRUB1	81	71.375	ENSACAG00000009282	TRUB1	97	71.375	Anolis_carolinensis
ENSCHIG00000020884	TRUB1	99	92.550	ENSANAG00000022870	TRUB1	99	92.550	Aotus_nancymaae
ENSCHIG00000020884	TRUB1	75	67.460	ENSACLG00000000823	trub1	91	67.460	Astatotilapia_calliptera
ENSCHIG00000020884	TRUB1	78	67.433	ENSAMXG00000015845	trub1	87	67.433	Astyanax_mexicanus
ENSCHIG00000020884	TRUB1	100	96.591	ENSBTAG00000012955	TRUB1	100	96.591	Bos_taurus
ENSCHIG00000020884	TRUB1	99	92.571	ENSCJAG00000047815	TRUB1	99	92.571	Callithrix_jacchus
ENSCHIG00000020884	TRUB1	99	92.857	ENSCAFG00000011688	TRUB1	98	93.275	Canis_familiaris
ENSCHIG00000020884	TRUB1	99	93.143	ENSCAFG00020013237	TRUB1	98	93.567	Canis_lupus_dingo
ENSCHIG00000020884	TRUB1	99	90.598	ENSTSYG00000000446	TRUB1	86	96.013	Carlito_syrichta
ENSCHIG00000020884	TRUB1	76	84.585	ENSCAPG00000017088	TRUB1	99	84.585	Cavia_aperea
ENSCHIG00000020884	TRUB1	58	92.821	ENSCPOG00000030129	-	76	92.821	Cavia_porcellus
ENSCHIG00000020884	TRUB1	70	84.146	ENSCPOG00000040236	-	98	84.874	Cavia_porcellus
ENSCHIG00000020884	TRUB1	99	91.714	ENSCCAG00000028842	TRUB1	97	92.690	Cebus_capucinus
ENSCHIG00000020884	TRUB1	99	92.286	ENSCATG00000033431	TRUB1	98	92.690	Cercocebus_atys
ENSCHIG00000020884	TRUB1	70	86.992	ENSCLAG00000008664	TRUB1	97	87.764	Chinchilla_lanigera
ENSCHIG00000020884	TRUB1	99	92.571	ENSCSAG00000004891	TRUB1	98	92.982	Chlorocebus_sabaeus
ENSCHIG00000020884	TRUB1	99	77.233	ENSCHOG00000011931	TRUB1	96	78.274	Choloepus_hoffmanni
ENSCHIG00000020884	TRUB1	81	79.412	ENSCPBG00000003051	TRUB1	94	79.412	Chrysemys_picta_bellii
ENSCHIG00000020884	TRUB1	99	92.571	ENSCANG00000029445	TRUB1	98	92.982	Colobus_angolensis_palliatus
ENSCHIG00000020884	TRUB1	76	86.667	ENSCGRG00001016772	-	90	78.188	Cricetulus_griseus_chok1gshd
ENSCHIG00000020884	TRUB1	84	79.359	ENSCGRG00001010322	-	80	78.983	Cricetulus_griseus_chok1gshd
ENSCHIG00000020884	TRUB1	84	87.900	ENSCGRG00000010806	Trub1	91	86.913	Cricetulus_griseus_crigri
ENSCHIG00000020884	TRUB1	77	62.891	ENSCSEG00000011261	trub1	97	57.143	Cynoglossus_semilaevis
ENSCHIG00000020884	TRUB1	77	66.279	ENSCVAG00000008791	trub1	79	66.279	Cyprinodon_variegatus
ENSCHIG00000020884	TRUB1	79	66.920	ENSDARG00000053805	trub1	99	70.588	Danio_rerio
ENSCHIG00000020884	TRUB1	95	87.651	ENSDNOG00000001069	TRUB1	95	87.651	Dasypus_novemcinctus
ENSCHIG00000020884	TRUB1	100	87.749	ENSDORG00000010431	Trub1	87	94.040	Dipodomys_ordii
ENSCHIG00000020884	TRUB1	81	77.941	ENSETEG00000009183	TRUB1	65	86.577	Echinops_telfairi
ENSCHIG00000020884	TRUB1	96	93.769	ENSEASG00005014739	TRUB1	98	93.294	Equus_asinus_asinus
ENSCHIG00000020884	TRUB1	96	93.769	ENSECAG00000007177	TRUB1	98	93.294	Equus_caballus
ENSCHIG00000020884	TRUB1	100	76.602	ENSEEUG00000013993	TRUB1	100	77.994	Erinaceus_europaeus
ENSCHIG00000020884	TRUB1	73	70.612	ENSELUG00000000502	trub1	86	70.612	Esox_lucius
ENSCHIG00000020884	TRUB1	90	96.000	ENSFCAG00000031927	TRUB1	98	92.962	Felis_catus
ENSCHIG00000020884	TRUB1	72	75.833	ENSFALG00000002232	TRUB1	92	75.833	Ficedula_albicollis
ENSCHIG00000020884	TRUB1	69	86.008	ENSFDAG00000008140	TRUB1	97	86.920	Fukomys_damarensis
ENSCHIG00000020884	TRUB1	73	66.531	ENSFHEG00000004016	trub1	89	63.846	Fundulus_heteroclitus
ENSCHIG00000020884	TRUB1	81	74.632	ENSGALG00000009091	TRUB1	96	74.632	Gallus_gallus
ENSCHIG00000020884	TRUB1	73	64.898	ENSGAFG00000009193	trub1	86	64.898	Gambusia_affinis
ENSCHIG00000020884	TRUB1	58	68.718	ENSGACG00000015387	trub1	96	68.718	Gasterosteus_aculeatus
ENSCHIG00000020884	TRUB1	89	75.503	ENSGAGG00000009758	TRUB1	81	78.169	Gopherus_agassizii
ENSCHIG00000020884	TRUB1	99	92.571	ENSGGOG00000004583	TRUB1	97	93.510	Gorilla_gorilla
ENSCHIG00000020884	TRUB1	75	67.460	ENSHBUG00000016787	trub1	91	67.460	Haplochromis_burtoni
ENSCHIG00000020884	TRUB1	100	86.040	ENSHGLG00000015314	TRUB1	98	86.297	Heterocephalus_glaber_female
ENSCHIG00000020884	TRUB1	70	84.553	ENSHGLG00100009183	TRUB1	93	89.140	Heterocephalus_glaber_male
ENSCHIG00000020884	TRUB1	73	68.571	ENSHCOG00000017877	trub1	89	68.571	Hippocampus_comes
ENSCHIG00000020884	TRUB1	80	67.041	ENSIPUG00000017559	trub1	95	66.914	Ictalurus_punctatus
ENSCHIG00000020884	TRUB1	90	93.709	ENSSTOG00000003641	TRUB1	90	93.709	Ictidomys_tridecemlineatus
ENSCHIG00000020884	TRUB1	90	91.667	ENSJJAG00000011800	Trub1	88	91.667	Jaculus_jaculus
ENSCHIG00000020884	TRUB1	76	66.148	ENSKMAG00000006232	trub1	92	66.148	Kryptolebias_marmoratus
ENSCHIG00000020884	TRUB1	80	64.662	ENSLBEG00000026722	trub1	92	64.662	Labrus_bergylta
ENSCHIG00000020884	TRUB1	83	72.826	ENSLACG00000014885	TRUB1	92	72.826	Latimeria_chalumnae
ENSCHIG00000020884	TRUB1	82	70.330	ENSLOCG00000012979	trub1	93	70.330	Lepisosteus_oculatus
ENSCHIG00000020884	TRUB1	99	78.431	ENSLAFG00000015452	TRUB1	86	85.333	Loxodonta_africana
ENSCHIG00000020884	TRUB1	99	92.286	ENSMFAG00000031767	TRUB1	98	92.690	Macaca_fascicularis
ENSCHIG00000020884	TRUB1	99	92.571	ENSMMUG00000001902	TRUB1	98	92.982	Macaca_mulatta
ENSCHIG00000020884	TRUB1	99	88.286	ENSMNEG00000044646	TRUB1	98	88.596	Macaca_nemestrina
ENSCHIG00000020884	TRUB1	99	92.286	ENSMLEG00000042655	TRUB1	98	92.690	Mandrillus_leucophaeus
ENSCHIG00000020884	TRUB1	75	67.460	ENSMZEG00005024095	trub1	91	67.460	Maylandia_zebra
ENSCHIG00000020884	TRUB1	81	74.632	ENSMGAG00000011135	TRUB1	93	74.632	Meleagris_gallopavo
ENSCHIG00000020884	TRUB1	90	84.281	ENSMAUG00000011101	Trub1	89	84.385	Mesocricetus_auratus
ENSCHIG00000020884	TRUB1	100	93.162	ENSMICG00000016324	TRUB1	98	93.294	Microcebus_murinus
ENSCHIG00000020884	TRUB1	90	86.093	ENSMOCG00000017759	Trub1	91	86.093	Microtus_ochrogaster
ENSCHIG00000020884	TRUB1	86	82.168	ENSMODG00000009676	TRUB1	81	80.405	Monodelphis_domestica
ENSCHIG00000020884	TRUB1	100	79.487	MGP_CAROLIEiJ_G0023100	Trub1	89	86.093	Mus_caroli
ENSCHIG00000020884	TRUB1	100	78.348	ENSMUSG00000025086	Trub1	89	85.099	Mus_musculus
ENSCHIG00000020884	TRUB1	90	86.424	MGP_PahariEiJ_G0014588	Trub1	89	86.424	Mus_pahari
ENSCHIG00000020884	TRUB1	100	78.632	MGP_SPRETEiJ_G0024021	Trub1	89	85.430	Mus_spretus
ENSCHIG00000020884	TRUB1	94	95.770	ENSMPUG00000003556	TRUB1	98	94.152	Mustela_putorius_furo
ENSCHIG00000020884	TRUB1	94	88.822	ENSMLUG00000017686	TRUB1	96	86.431	Myotis_lucifugus
ENSCHIG00000020884	TRUB1	100	85.470	ENSNGAG00000018682	Trub1	87	91.060	Nannospalax_galili
ENSCHIG00000020884	TRUB1	74	68.699	ENSNBRG00000023393	trub1	88	68.699	Neolamprologus_brichardi
ENSCHIG00000020884	TRUB1	96	92.857	ENSNLEG00000016345	TRUB1	98	92.398	Nomascus_leucogenys
ENSCHIG00000020884	TRUB1	60	90.050	ENSMEUG00000006603	TRUB1	78	87.204	Notamacropus_eugenii
ENSCHIG00000020884	TRUB1	90	86.093	ENSOPRG00000009371	TRUB1	88	86.093	Ochotona_princeps
ENSCHIG00000020884	TRUB1	100	84.900	ENSODEG00000010854	TRUB1	98	85.673	Octodon_degus
ENSCHIG00000020884	TRUB1	74	68.293	ENSONIG00000007249	trub1	89	68.293	Oreochromis_niloticus
ENSCHIG00000020884	TRUB1	82	80.292	ENSOANG00000001556	TRUB1	93	78.092	Ornithorhynchus_anatinus
ENSCHIG00000020884	TRUB1	95	87.048	ENSOCUG00000009456	TRUB1	96	87.048	Oryctolagus_cuniculus
ENSCHIG00000020884	TRUB1	72	69.710	ENSORLG00000029719	trub1	87	69.421	Oryzias_latipes
ENSCHIG00000020884	TRUB1	72	69.295	ENSORLG00020016767	trub1	86	69.008	Oryzias_latipes_hni
ENSCHIG00000020884	TRUB1	72	69.295	ENSORLG00015014728	trub1	87	69.008	Oryzias_latipes_hsok
ENSCHIG00000020884	TRUB1	78	66.795	ENSOMEG00000014556	trub1	85	69.008	Oryzias_melastigma
ENSCHIG00000020884	TRUB1	96	96.552	ENSOGAG00000015895	TRUB1	98	94.444	Otolemur_garnettii
ENSCHIG00000020884	TRUB1	100	95.251	ENSOARG00000015591	TRUB1	100	95.251	Ovis_aries
ENSCHIG00000020884	TRUB1	99	92.571	ENSPPAG00000043645	TRUB1	98	92.982	Pan_paniscus
ENSCHIG00000020884	TRUB1	94	94.242	ENSPPRG00000007096	TRUB1	98	92.375	Panthera_pardus
ENSCHIG00000020884	TRUB1	94	94.545	ENSPTIG00000006378	TRUB1	98	92.669	Panthera_tigris_altaica
ENSCHIG00000020884	TRUB1	99	92.571	ENSPTRG00000002964	TRUB1	98	92.982	Pan_troglodytes
ENSCHIG00000020884	TRUB1	99	92.286	ENSPANG00000020712	TRUB1	86	97.010	Papio_anubis
ENSCHIG00000020884	TRUB1	52	68.786	ENSPKIG00000003852	trub1	72	70.659	Paramormyrops_kingsleyae
ENSCHIG00000020884	TRUB1	81	77.574	ENSPSIG00000012877	TRUB1	93	77.574	Pelodiscus_sinensis
ENSCHIG00000020884	TRUB1	73	65.714	ENSPMGG00000000075	trub1	88	65.714	Periophthalmus_magnuspinnatus
ENSCHIG00000020884	TRUB1	90	84.385	ENSPEMG00000011156	Trub1	89	84.385	Peromyscus_maniculatus_bairdii
ENSCHIG00000020884	TRUB1	86	82.168	ENSPCIG00000009729	TRUB1	79	81.164	Phascolarctos_cinereus
ENSCHIG00000020884	TRUB1	73	66.531	ENSPFOG00000009950	trub1	90	66.531	Poecilia_formosa
ENSCHIG00000020884	TRUB1	73	66.531	ENSPLAG00000013855	trub1	86	66.531	Poecilia_latipinna
ENSCHIG00000020884	TRUB1	73	66.531	ENSPMEG00000009064	trub1	88	66.531	Poecilia_mexicana
ENSCHIG00000020884	TRUB1	73	67.347	ENSPREG00000003343	trub1	88	67.347	Poecilia_reticulata
ENSCHIG00000020884	TRUB1	96	93.155	ENSPPYG00000002676	TRUB1	98	92.690	Pongo_abelii
ENSCHIG00000020884	TRUB1	99	74.432	ENSPCAG00000008427	TRUB1	85	78.667	Procavia_capensis
ENSCHIG00000020884	TRUB1	100	87.464	ENSPCOG00000024360	TRUB1	86	90.397	Propithecus_coquereli
ENSCHIG00000020884	TRUB1	75	92.453	ENSPVAG00000007575	TRUB1	98	92.607	Pteropus_vampyrus
ENSCHIG00000020884	TRUB1	75	67.460	ENSPNYG00000018614	trub1	91	67.460	Pundamilia_nyererei
ENSCHIG00000020884	TRUB1	78	59.615	ENSPNAG00000006881	trub1	84	59.615	Pygocentrus_nattereri
ENSCHIG00000020884	TRUB1	97	84.000	ENSRNOG00000017321	Trub1	95	84.000	Rattus_norvegicus
ENSCHIG00000020884	TRUB1	99	82.857	ENSRBIG00000033423	TRUB1	98	83.041	Rhinopithecus_bieti
ENSCHIG00000020884	TRUB1	99	92.286	ENSRROG00000033902	TRUB1	98	92.690	Rhinopithecus_roxellana
ENSCHIG00000020884	TRUB1	99	92.000	ENSSBOG00000024237	TRUB1	99	92.000	Saimiri_boliviensis_boliviensis
ENSCHIG00000020884	TRUB1	76	80.078	ENSSHAG00000009346	TRUB1	86	80.078	Sarcophilus_harrisii
ENSCHIG00000020884	TRUB1	73	70.782	ENSSFOG00015022124	trub1	83	70.782	Scleropages_formosus
ENSCHIG00000020884	TRUB1	74	69.106	ENSSMAG00000001020	trub1	88	69.106	Scophthalmus_maximus
ENSCHIG00000020884	TRUB1	72	69.583	ENSSDUG00000016414	trub1	88	69.512	Seriola_dumerili
ENSCHIG00000020884	TRUB1	72	70.000	ENSSLDG00000015486	trub1	88	69.919	Seriola_lalandi_dorsalis
ENSCHIG00000020884	TRUB1	84	77.857	ENSSPUG00000001642	TRUB1	96	77.857	Sphenodon_punctatus
ENSCHIG00000020884	TRUB1	79	66.920	ENSSPAG00000001217	trub1	94	66.920	Stegastes_partitus
ENSCHIG00000020884	TRUB1	100	88.604	ENSSSCG00000010653	TRUB1	98	89.213	Sus_scrofa
ENSCHIG00000020884	TRUB1	81	75.556	ENSTGUG00000010971	TRUB1	97	75.368	Taeniopygia_guttata
ENSCHIG00000020884	TRUB1	76	77.470	ENSTBEG00000002880	TRUB1	99	77.470	Tupaia_belangeri
ENSCHIG00000020884	TRUB1	71	95.339	ENSTTRG00000005767	TRUB1	97	93.385	Tursiops_truncatus
ENSCHIG00000020884	TRUB1	96	96.262	ENSUAMG00000024876	TRUB1	98	94.737	Ursus_americanus
ENSCHIG00000020884	TRUB1	88	97.966	ENSUMAG00000002411	TRUB1	88	97.973	Ursus_maritimus
ENSCHIG00000020884	TRUB1	100	93.732	ENSVPAG00000005507	TRUB1	97	94.412	Vicugna_pacos
ENSCHIG00000020884	TRUB1	99	91.143	ENSVVUG00000010085	TRUB1	73	96.678	Vulpes_vulpes
ENSCHIG00000020884	TRUB1	81	66.544	ENSXETG00000023828	trub1	98	66.544	Xenopus_tropicalis
ENSCHIG00000020884	TRUB1	73	65.574	ENSXCOG00000017847	trub1	86	65.574	Xiphophorus_couchianus
ENSCHIG00000020884	TRUB1	73	65.714	ENSXMAG00000014701	trub1	88	65.714	Xiphophorus_maculatus