EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000021000 (Gene tree)
Gene ID: 102180418
Gene Symbol: CHD9
Alias: BC022889|FLJ12178|KIAA0308
Full Name: chromodomain helicase DNA binding protein 9
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 127833 bases
Position: chr18:23019798-23147630
Accession: 102180418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000023447	ResIII	PF04851.15	6.2e-06	1	1
ENSCHIP00000023447	BRK	PF07533.16	3.7e-31	1	2
ENSCHIP00000023447	BRK	PF07533.16	3.7e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000031307	CHD9-201	8511	XM_005691972	ENSCHIP00000023447	2836 (aa)	XP_005692029	UPI000D18E27A

Gene Model

Click here to download ENSCHIG00000021000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000021000's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000021000	CHD9	69	66.239	ENSCHIG00000017606	CHD6	76	64.257
ENSCHIG00000021000	CHD9	73	56.910	ENSCHIG00000026157	CHD8	72	67.518
ENSCHIG00000021000	CHD9	87	58.715	ENSCHIG00000011729	CHD7	72	53.609

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000021000	CHD9	100	94.282	ENSAMEG00000016232	CHD9	100	94.110	Ailuropoda_melanoleuca
ENSCHIG00000021000	CHD9	56	73.049	ENSACIG00000004097	chd9	97	59.742	Amphilophus_citrinellus
ENSCHIG00000021000	CHD9	99	82.873	ENSAPLG00000002826	CHD9	99	82.733	Anas_platyrhynchos
ENSCHIG00000021000	CHD9	70	66.032	ENSAMXG00000005652	chd9	68	73.612	Astyanax_mexicanus
ENSCHIG00000021000	CHD9	100	96.862	ENSBTAG00000002287	CHD9	100	96.690	Bos_taurus
ENSCHIG00000021000	CHD9	100	94.039	ENSCAFG00000009699	CHD9	100	93.866	Canis_familiaris
ENSCHIG00000021000	CHD9	100	94.039	ENSCAFG00020002879	CHD9	100	94.505	Canis_lupus_dingo
ENSCHIG00000021000	CHD9	92	94.366	ENSCAPG00000011604	CHD9	96	79.528	Cavia_aperea
ENSCHIG00000021000	CHD9	99	91.080	ENSCPOG00000036544	CHD9	97	91.071	Cavia_porcellus
ENSCHIG00000021000	CHD9	74	98.077	ENSCHOG00000003935	CHD9	76	98.077	Choloepus_hoffmanni
ENSCHIG00000021000	CHD9	99	81.480	ENSCPBG00000012459	CHD9	99	90.512	Chrysemys_picta_bellii
ENSCHIG00000021000	CHD9	62	74.486	ENSCVAG00000016195	chd9	96	62.138	Cyprinodon_variegatus
ENSCHIG00000021000	CHD9	82	98.295	ENSETEG00000009565	CHD9	81	98.295	Echinops_telfairi
ENSCHIG00000021000	CHD9	94	93.644	ENSEASG00005014832	CHD9	99	97.493	Equus_asinus_asinus
ENSCHIG00000021000	CHD9	99	94.317	ENSECAG00000011505	CHD9	97	94.311	Equus_caballus
ENSCHIG00000021000	CHD9	74	98.343	ENSEEUG00000014515	CHD9	76	98.343	Erinaceus_europaeus
ENSCHIG00000021000	CHD9	83	67.747	ENSELUG00000006031	chd9	82	74.096	Esox_lucius
ENSCHIG00000021000	CHD9	56	74.635	ENSFHEG00000006068	chd9	96	68.079	Fundulus_heteroclitus
ENSCHIG00000021000	CHD9	68	75.509	ENSGMOG00000006040	chd9	83	75.577	Gadus_morhua
ENSCHIG00000021000	CHD9	56	75.106	ENSHBUG00000023322	chd9	96	66.551	Haplochromis_burtoni
ENSCHIG00000021000	CHD9	75	94.930	ENSHGLG00000014938	CHD9	99	95.954	Heterocephalus_glaber_female
ENSCHIG00000021000	CHD9	66	69.029	ENSHCOG00000000937	chd9	85	68.090	Hippocampus_comes
ENSCHIG00000021000	CHD9	81	67.680	ENSIPUG00000016448	chd9	97	69.343	Ictalurus_punctatus
ENSCHIG00000021000	CHD9	87	71.948	ENSLOCG00000007225	chd9	95	78.919	Lepisosteus_oculatus
ENSCHIG00000021000	CHD9	56	75.136	ENSMZEG00005006581	chd9	97	67.552	Maylandia_zebra
ENSCHIG00000021000	CHD9	95	78.473	ENSMGAG00000004642	CHD9	72	80.139	Meleagris_gallopavo
ENSCHIG00000021000	CHD9	73	84.423	ENSMODG00000013142	-	100	84.524	Monodelphis_domestica
ENSCHIG00000021000	CHD9	56	74.375	ENSMALG00000013306	chd9	94	61.700	Monopterus_albus
ENSCHIG00000021000	CHD9	64	90.450	ENSMUSG00000056608	Chd9	99	93.757	Mus_musculus
ENSCHIG00000021000	CHD9	82	73.245	ENSNBRG00000009423	chd9	99	59.019	Neolamprologus_brichardi
ENSCHIG00000021000	CHD9	52	96.732	ENSMEUG00000008222	-	84	96.732	Notamacropus_eugenii
ENSCHIG00000021000	CHD9	72	98.667	ENSOPRG00000011168	CHD9	71	98.667	Ochotona_princeps
ENSCHIG00000021000	CHD9	56	74.407	ENSORLG00000013810	chd9	98	66.220	Oryzias_latipes
ENSCHIG00000021000	CHD9	66	74.373	ENSORLG00015019126	chd9	99	60.262	Oryzias_latipes_hsok
ENSCHIG00000021000	CHD9	100	96.831	ENSOARG00000017664	CHD9	100	96.659	Ovis_aries
ENSCHIG00000021000	CHD9	74	64.073	ENSPKIG00000021876	chd9	99	67.535	Paramormyrops_kingsleyae
ENSCHIG00000021000	CHD9	98	57.598	ENSPKIG00000025401	-	98	60.387	Paramormyrops_kingsleyae
ENSCHIG00000021000	CHD9	65	83.838	ENSPSIG00000008099	CHD9	99	83.838	Pelodiscus_sinensis
ENSCHIG00000021000	CHD9	53	69.864	ENSPMAG00000006035	-	92	67.418	Petromyzon_marinus
ENSCHIG00000021000	CHD9	84	86.355	ENSPCIG00000017215	CHD9	97	91.383	Phascolarctos_cinereus
ENSCHIG00000021000	CHD9	68	100.000	ENSPCAG00000007564	CHD9	74	100.000	Procavia_capensis
ENSCHIG00000021000	CHD9	99	93.706	ENSPCOG00000028433	CHD9	100	93.773	Propithecus_coquereli
ENSCHIG00000021000	CHD9	85	90.463	ENSPVAG00000015617	CHD9	84	90.463	Pteropus_vampyrus
ENSCHIG00000021000	CHD9	63	71.007	ENSPNAG00000024141	chd9	99	58.721	Pygocentrus_nattereri
ENSCHIG00000021000	CHD9	55	89.079	ENSRNOG00000049302	Chd9	100	89.079	Rattus_norvegicus
ENSCHIG00000021000	CHD9	74	64.187	ENSSFOG00015020209	chd9	99	67.154	Scleropages_formosus
ENSCHIG00000021000	CHD9	86	65.200	ENSSFOG00015001327	chd9	97	60.776	Scleropages_formosus
ENSCHIG00000021000	CHD9	83	71.629	ENSSMAG00000008953	chd9	99	61.111	Scophthalmus_maximus
ENSCHIG00000021000	CHD9	61	74.426	ENSSDUG00000006139	chd9	95	68.505	Seriola_dumerili
ENSCHIG00000021000	CHD9	61	74.486	ENSSLDG00000017818	chd9	99	60.444	Seriola_lalandi_dorsalis
ENSCHIG00000021000	CHD9	55	91.240	ENSSARG00000010632	CHD9	54	91.468	Sorex_araneus
ENSCHIG00000021000	CHD9	100	95.905	ENSSSCG00000033591	CHD9	100	95.905	Sus_scrofa
ENSCHIG00000021000	CHD9	61	74.328	ENSTRUG00000009125	chd9	73	61.601	Takifugu_rubripes
ENSCHIG00000021000	CHD9	56	81.951	ENSTNIG00000003825	chd9	89	81.951	Tetraodon_nigroviridis
ENSCHIG00000021000	CHD9	67	95.946	ENSTBEG00000016052	-	80	95.909	Tupaia_belangeri
ENSCHIG00000021000	CHD9	90	93.944	ENSTTRG00000012674	CHD9	90	93.752	Tursiops_truncatus
ENSCHIG00000021000	CHD9	88	93.862	ENSUMAG00000004043	CHD9	99	98.087	Ursus_maritimus
ENSCHIG00000021000	CHD9	50	94.372	ENSVPAG00000001374	CHD9	51	94.372	Vicugna_pacos
ENSCHIG00000021000	CHD9	100	94.073	ENSVVUG00000019435	CHD9	100	93.901	Vulpes_vulpes
ENSCHIG00000021000	CHD9	70	76.351	ENSXETG00000000349	chd9	96	76.351	Xenopus_tropicalis