EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000021998 (Gene tree)
Gene ID: 102180253
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 199100 bases
Position: chr19:22877957-23077056
Accession: 102180253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000025103	EST1	PF10374.9	3.6e-15	1	1
ENSCHIP00000025103	EST1_DNA_bind	PF10373.9	8.8e-61	1	1
ENSCHIP00000025103	PIN_4	PF13638.6	1.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000032964	SMG6-201	4236	XM_018064405	ENSCHIP00000025103	1411 (aa)	XP_017919894	UPI000847B2EB

Gene Model

Click here to download ENSCHIG00000021998's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000021998's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000021998	SMG6	100	92.178	ENSG00000070366	SMG6	100	97.260	Homo_sapiens
ENSCHIG00000021998	SMG6	83	55.265	ENSAPOG00000019448	smg6	74	55.442	Acanthochromis_polyacanthus
ENSCHIG00000021998	SMG6	100	94.492	ENSAMEG00000007632	SMG6	100	94.492	Ailuropoda_melanoleuca
ENSCHIG00000021998	SMG6	87	54.058	ENSAOCG00000002630	smg6	74	55.356	Amphiprion_ocellaris
ENSCHIG00000021998	SMG6	87	54.211	ENSAPEG00000019101	smg6	74	55.391	Amphiprion_percula
ENSCHIG00000021998	SMG6	83	55.442	ENSATEG00000006483	smg6	73	55.469	Anabas_testudineus
ENSCHIG00000021998	SMG6	87	56.841	ENSACAG00000011783	SMG6	99	58.399	Anolis_carolinensis
ENSCHIG00000021998	SMG6	100	92.600	ENSANAG00000035760	SMG6	100	92.600	Aotus_nancymaae
ENSCHIG00000021998	SMG6	72	59.539	ENSACLG00000005288	smg6	80	55.704	Astatotilapia_calliptera
ENSCHIG00000021998	SMG6	69	63.269	ENSAMXG00000017326	smg6	98	50.840	Astyanax_mexicanus
ENSCHIG00000021998	SMG6	100	98.724	ENSBTAG00000000267	SMG6	100	98.724	Bos_taurus
ENSCHIG00000021998	SMG6	100	92.389	ENSCJAG00000001820	SMG6	100	92.389	Callithrix_jacchus
ENSCHIG00000021998	SMG6	100	93.984	ENSCAFG00000019260	SMG6	100	93.984	Canis_familiaris
ENSCHIG00000021998	SMG6	100	93.984	ENSCAFG00020009770	SMG6	100	93.984	Canis_lupus_dingo
ENSCHIG00000021998	SMG6	100	92.248	ENSTSYG00000003406	SMG6	100	97.456	Carlito_syrichta
ENSCHIG00000021998	SMG6	98	76.280	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSCHIG00000021998	SMG6	100	90.070	ENSCPOG00000014878	SMG6	100	90.070	Cavia_porcellus
ENSCHIG00000021998	SMG6	100	93.023	ENSCCAG00000035801	SMG6	100	93.023	Cebus_capucinus
ENSCHIG00000021998	SMG6	100	92.812	ENSCATG00000031956	SMG6	100	92.812	Cercocebus_atys
ENSCHIG00000021998	SMG6	100	91.896	ENSCLAG00000006748	SMG6	100	91.896	Chinchilla_lanigera
ENSCHIG00000021998	SMG6	100	93.164	ENSCSAG00000013800	SMG6	100	93.164	Chlorocebus_sabaeus
ENSCHIG00000021998	SMG6	51	98.507	ENSCHOG00000005024	-	66	98.507	Choloepus_hoffmanni
ENSCHIG00000021998	SMG6	100	72.411	ENSCPBG00000020369	SMG6	100	72.740	Chrysemys_picta_bellii
ENSCHIG00000021998	SMG6	98	92.635	ENSCANG00000031764	SMG6	100	97.260	Colobus_angolensis_palliatus
ENSCHIG00000021998	SMG6	55	86.957	ENSCGRG00001019595	Smg6	98	86.957	Cricetulus_griseus_chok1gshd
ENSCHIG00000021998	SMG6	98	85.126	ENSCGRG00000007782	Smg6	99	85.271	Cricetulus_griseus_crigri
ENSCHIG00000021998	SMG6	86	52.893	ENSCSEG00000012757	smg6	94	49.232	Cynoglossus_semilaevis
ENSCHIG00000021998	SMG6	85	53.058	ENSCVAG00000012789	smg6	76	53.893	Cyprinodon_variegatus
ENSCHIG00000021998	SMG6	100	50.708	ENSDARG00000100481	smg6	100	51.423	Danio_rerio
ENSCHIG00000021998	SMG6	100	92.319	ENSDNOG00000048283	SMG6	100	92.319	Dasypus_novemcinctus
ENSCHIG00000021998	SMG6	100	88.632	ENSDORG00000016614	Smg6	94	98.649	Dipodomys_ordii
ENSCHIG00000021998	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSCHIG00000021998	SMG6	74	50.345	ENSEBUG00000005059	smg6	73	49.020	Eptatretus_burgeri
ENSCHIG00000021998	SMG6	99	94.472	ENSEASG00005009318	SMG6	99	94.472	Equus_asinus_asinus
ENSCHIG00000021998	SMG6	99	94.189	ENSECAG00000006519	SMG6	99	94.189	Equus_caballus
ENSCHIG00000021998	SMG6	100	82.636	ENSEEUG00000003493	SMG6	100	82.636	Erinaceus_europaeus
ENSCHIG00000021998	SMG6	72	60.556	ENSELUG00000005934	smg6	67	56.648	Esox_lucius
ENSCHIG00000021998	SMG6	100	94.904	ENSFCAG00000028817	SMG6	100	94.904	Felis_catus
ENSCHIG00000021998	SMG6	98	72.701	ENSFALG00000006538	SMG6	99	72.773	Ficedula_albicollis
ENSCHIG00000021998	SMG6	100	91.684	ENSFDAG00000015106	SMG6	100	91.684	Fukomys_damarensis
ENSCHIG00000021998	SMG6	83	53.468	ENSFHEG00000013282	smg6	75	53.894	Fundulus_heteroclitus
ENSCHIG00000021998	SMG6	53	69.626	ENSGMOG00000019077	smg6	58	69.626	Gadus_morhua
ENSCHIG00000021998	SMG6	100	71.488	ENSGALG00000003108	SMG6	98	71.716	Gallus_gallus
ENSCHIG00000021998	SMG6	83	54.196	ENSGAFG00000000379	smg6	74	54.702	Gambusia_affinis
ENSCHIG00000021998	SMG6	91	54.120	ENSGACG00000020521	smg6	99	54.139	Gasterosteus_aculeatus
ENSCHIG00000021998	SMG6	98	72.630	ENSGAGG00000025617	SMG6	99	72.967	Gopherus_agassizii
ENSCHIG00000021998	SMG6	100	92.953	ENSGGOG00000017156	SMG6	100	92.953	Gorilla_gorilla
ENSCHIG00000021998	SMG6	83	55.284	ENSHBUG00000021311	smg6	74	55.862	Haplochromis_burtoni
ENSCHIG00000021998	SMG6	100	91.555	ENSHGLG00000012882	SMG6	100	91.555	Heterocephalus_glaber_female
ENSCHIG00000021998	SMG6	100	91.626	ENSHGLG00100017815	SMG6	100	91.626	Heterocephalus_glaber_male
ENSCHIG00000021998	SMG6	77	56.526	ENSHCOG00000008761	smg6	97	54.146	Hippocampus_comes
ENSCHIG00000021998	SMG6	83	56.109	ENSIPUG00000012493	smg6	75	55.485	Ictalurus_punctatus
ENSCHIG00000021998	SMG6	100	92.953	ENSSTOG00000028127	SMG6	100	92.953	Ictidomys_tridecemlineatus
ENSCHIG00000021998	SMG6	79	88.036	ENSJJAG00000015367	Smg6	95	86.123	Jaculus_jaculus
ENSCHIG00000021998	SMG6	78	54.604	ENSKMAG00000000279	smg6	76	53.699	Kryptolebias_marmoratus
ENSCHIG00000021998	SMG6	85	53.544	ENSLBEG00000002184	smg6	75	53.740	Labrus_bergylta
ENSCHIG00000021998	SMG6	55	58.180	ENSLACG00000000806	-	98	59.383	Latimeria_chalumnae
ENSCHIG00000021998	SMG6	73	65.575	ENSLOCG00000006448	smg6	99	55.640	Lepisosteus_oculatus
ENSCHIG00000021998	SMG6	100	91.755	ENSLAFG00000001261	SMG6	100	91.755	Loxodonta_africana
ENSCHIG00000021998	SMG6	100	93.376	ENSMFAG00000003394	SMG6	100	93.376	Macaca_fascicularis
ENSCHIG00000021998	SMG6	100	93.305	ENSMMUG00000023161	SMG6	100	93.305	Macaca_mulatta
ENSCHIG00000021998	SMG6	100	88.475	ENSMNEG00000044592	SMG6	100	88.475	Macaca_nemestrina
ENSCHIG00000021998	SMG6	93	97.368	ENSMLEG00000029353	SMG6	99	97.368	Mandrillus_leucophaeus
ENSCHIG00000021998	SMG6	85	55.196	ENSMAMG00000020119	smg6	69	61.071	Mastacembelus_armatus
ENSCHIG00000021998	SMG6	72	59.724	ENSMZEG00005024736	smg6	74	55.669	Maylandia_zebra
ENSCHIG00000021998	SMG6	73	66.131	ENSMGAG00000005401	-	99	65.941	Meleagris_gallopavo
ENSCHIG00000021998	SMG6	100	93.939	ENSMICG00000012913	SMG6	100	93.939	Microcebus_murinus
ENSCHIG00000021998	SMG6	100	48.167	ENSMMOG00000010883	smg6	100	48.523	Mola_mola
ENSCHIG00000021998	SMG6	100	85.865	ENSMODG00000010622	SMG6	100	85.865	Monodelphis_domestica
ENSCHIG00000021998	SMG6	85	54.376	ENSMALG00000001106	smg6	74	55.035	Monopterus_albus
ENSCHIG00000021998	SMG6	100	91.402	MGP_CAROLIEiJ_G0016729	Smg6	98	95.677	Mus_caroli
ENSCHIG00000021998	SMG6	100	91.261	ENSMUSG00000038290	Smg6	97	95.652	Mus_musculus
ENSCHIG00000021998	SMG6	100	90.903	MGP_PahariEiJ_G0017866	Smg6	98	94.813	Mus_pahari
ENSCHIG00000021998	SMG6	100	91.261	MGP_SPRETEiJ_G0017572	Smg6	97	95.942	Mus_spretus
ENSCHIG00000021998	SMG6	100	94.338	ENSMPUG00000013046	SMG6	100	94.338	Mustela_putorius_furo
ENSCHIG00000021998	SMG6	100	93.347	ENSMLUG00000005739	SMG6	100	93.347	Myotis_lucifugus
ENSCHIG00000021998	SMG6	98	90.246	ENSNGAG00000007287	Smg6	99	90.246	Nannospalax_galili
ENSCHIG00000021998	SMG6	83	54.374	ENSNBRG00000009511	smg6	81	55.118	Neolamprologus_brichardi
ENSCHIG00000021998	SMG6	98	92.468	ENSNLEG00000017171	SMG6	100	97.456	Nomascus_leucogenys
ENSCHIG00000021998	SMG6	98	82.421	ENSMEUG00000015804	SMG6	99	82.421	Notamacropus_eugenii
ENSCHIG00000021998	SMG6	62	90.045	ENSOPRG00000000579	SMG6	85	96.842	Ochotona_princeps
ENSCHIG00000021998	SMG6	100	85.081	ENSODEG00000008038	SMG6	100	85.081	Octodon_degus
ENSCHIG00000021998	SMG6	100	51.436	ENSONIG00000005594	smg6	100	51.901	Oreochromis_niloticus
ENSCHIG00000021998	SMG6	100	92.400	ENSOCUG00000013018	SMG6	100	92.400	Oryctolagus_cuniculus
ENSCHIG00000021998	SMG6	84	54.431	ENSORLG00000003317	smg6	75	54.844	Oryzias_latipes
ENSCHIG00000021998	SMG6	84	54.481	ENSORLG00020015343	smg6	74	54.503	Oryzias_latipes_hni
ENSCHIG00000021998	SMG6	84	54.353	ENSORLG00015020454	smg6	75	54.766	Oryzias_latipes_hsok
ENSCHIG00000021998	SMG6	83	53.191	ENSOMEG00000010838	smg6	75	53.949	Oryzias_melastigma
ENSCHIG00000021998	SMG6	100	93.239	ENSOGAG00000004483	SMG6	100	93.239	Otolemur_garnettii
ENSCHIG00000021998	SMG6	100	97.880	ENSOARG00000015076	SMG6	100	99.493	Ovis_aries
ENSCHIG00000021998	SMG6	100	93.023	ENSPPAG00000043296	SMG6	100	93.023	Pan_paniscus
ENSCHIG00000021998	SMG6	100	94.975	ENSPPRG00000014581	SMG6	100	94.975	Panthera_pardus
ENSCHIG00000021998	SMG6	98	94.939	ENSPTIG00000008925	SMG6	100	98.043	Panthera_tigris_altaica
ENSCHIG00000021998	SMG6	100	92.953	ENSPTRG00000008544	SMG6	100	97.260	Pan_troglodytes
ENSCHIG00000021998	SMG6	100	93.023	ENSPANG00000024588	SMG6	100	93.023	Papio_anubis
ENSCHIG00000021998	SMG6	89	70.611	ENSPSIG00000006660	SMG6	96	70.588	Pelodiscus_sinensis
ENSCHIG00000021998	SMG6	100	50.033	ENSPMGG00000000844	smg6	100	60.742	Periophthalmus_magnuspinnatus
ENSCHIG00000021998	SMG6	100	91.966	ENSPEMG00000020707	Smg6	100	91.966	Peromyscus_maniculatus_bairdii
ENSCHIG00000021998	SMG6	100	51.167	ENSPFOG00000012035	smg6	100	51.678	Poecilia_formosa
ENSCHIG00000021998	SMG6	83	53.432	ENSPLAG00000017660	smg6	74	54.431	Poecilia_latipinna
ENSCHIG00000021998	SMG6	83	53.816	ENSPMEG00000000258	smg6	74	54.745	Poecilia_mexicana
ENSCHIG00000021998	SMG6	83	54.003	ENSPREG00000010066	smg6	74	54.438	Poecilia_reticulata
ENSCHIG00000021998	SMG6	100	87.623	ENSPPYG00000007790	SMG6	100	87.623	Pongo_abelii
ENSCHIG00000021998	SMG6	100	88.090	ENSPCAG00000000552	SMG6	100	88.090	Procavia_capensis
ENSCHIG00000021998	SMG6	100	93.587	ENSPCOG00000020925	SMG6	100	93.587	Propithecus_coquereli
ENSCHIG00000021998	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSCHIG00000021998	SMG6	83	54.173	ENSPNYG00000024151	smg6	79	57.724	Pundamilia_nyererei
ENSCHIG00000021998	SMG6	84	52.496	ENSPNAG00000015480	smg6	87	63.196	Pygocentrus_nattereri
ENSCHIG00000021998	SMG6	100	91.473	ENSRNOG00000003041	Smg6	97	96.254	Rattus_norvegicus
ENSCHIG00000021998	SMG6	100	92.600	ENSRBIG00000024746	SMG6	100	92.600	Rhinopithecus_bieti
ENSCHIG00000021998	SMG6	100	92.671	ENSRROG00000030423	SMG6	100	96.869	Rhinopithecus_roxellana
ENSCHIG00000021998	SMG6	100	92.600	ENSSBOG00000022518	SMG6	100	90.909	Saimiri_boliviensis_boliviensis
ENSCHIG00000021998	SMG6	99	84.907	ENSSHAG00000010045	SMG6	98	84.907	Sarcophilus_harrisii
ENSCHIG00000021998	SMG6	72	62.605	ENSSFOG00015005436	smg6	70	57.602	Scleropages_formosus
ENSCHIG00000021998	SMG6	83	55.538	ENSSMAG00000019777	smg6	73	55.425	Scophthalmus_maximus
ENSCHIG00000021998	SMG6	89	53.182	ENSSDUG00000016412	smg6	79	52.758	Seriola_dumerili
ENSCHIG00000021998	SMG6	86	52.309	ENSSLDG00000020747	smg6	83	51.802	Seriola_lalandi_dorsalis
ENSCHIG00000021998	SMG6	99	70.182	ENSSPUG00000007152	SMG6	99	70.112	Sphenodon_punctatus
ENSCHIG00000021998	SMG6	83	54.445	ENSSPAG00000015633	smg6	74	54.867	Stegastes_partitus
ENSCHIG00000021998	SMG6	100	95.184	ENSSSCG00000017826	SMG6	100	95.184	Sus_scrofa
ENSCHIG00000021998	SMG6	100	72.740	ENSTGUG00000005836	SMG6	100	72.670	Taeniopygia_guttata
ENSCHIG00000021998	SMG6	100	48.496	ENSTRUG00000000358	smg6	100	49.037	Takifugu_rubripes
ENSCHIG00000021998	SMG6	100	50.000	ENSTNIG00000016164	smg6	100	50.000	Tetraodon_nigroviridis
ENSCHIG00000021998	SMG6	100	88.443	ENSTBEG00000011424	SMG6	100	88.231	Tupaia_belangeri
ENSCHIG00000021998	SMG6	91	92.879	ENSTTRG00000001175	SMG6	91	92.879	Tursiops_truncatus
ENSCHIG00000021998	SMG6	100	94.562	ENSUAMG00000025152	SMG6	100	94.492	Ursus_americanus
ENSCHIG00000021998	SMG6	98	94.790	ENSUMAG00000009306	SMG6	100	94.790	Ursus_maritimus
ENSCHIG00000021998	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSCHIG00000021998	SMG6	100	93.701	ENSVVUG00000021727	SMG6	100	93.701	Vulpes_vulpes
ENSCHIG00000021998	SMG6	98	59.648	ENSXETG00000023799	SMG6	99	59.437	Xenopus_tropicalis
ENSCHIG00000021998	SMG6	83	54.880	ENSXCOG00000009867	smg6	74	55.032	Xiphophorus_couchianus
ENSCHIG00000021998	SMG6	83	54.346	ENSXMAG00000010321	smg6	74	54.617	Xiphophorus_maculatus