EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000023390 (Gene tree)
Gene ID: 102172121
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 420145 bases
Position: chr4:27821927-28242071
Accession: 102172121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000027816	TUDOR	PF00567.24	7.2e-28	1	1
ENSCHIP00000027822	TUDOR	PF00567.24	7.3e-28	1	1
ENSCHIP00000027827	TUDOR	PF00567.24	7.4e-28	1	1
ENSCHIP00000027781	TUDOR	PF00567.24	7.5e-28	1	1
ENSCHIP00000027769	TUDOR	PF00567.24	7.6e-28	1	1
ENSCHIP00000027827	SNase	PF00565.17	7e-70	1	5
ENSCHIP00000027827	SNase	PF00565.17	7e-70	2	5
ENSCHIP00000027827	SNase	PF00565.17	7e-70	3	5
ENSCHIP00000027827	SNase	PF00565.17	7e-70	4	5
ENSCHIP00000027827	SNase	PF00565.17	7e-70	5	5
ENSCHIP00000027769	SNase	PF00565.17	7.4e-70	1	5
ENSCHIP00000027769	SNase	PF00565.17	7.4e-70	2	5
ENSCHIP00000027769	SNase	PF00565.17	7.4e-70	3	5
ENSCHIP00000027769	SNase	PF00565.17	7.4e-70	4	5
ENSCHIP00000027769	SNase	PF00565.17	7.4e-70	5	5
ENSCHIP00000027822	SNase	PF00565.17	2.7e-68	1	5
ENSCHIP00000027822	SNase	PF00565.17	2.7e-68	2	5
ENSCHIP00000027822	SNase	PF00565.17	2.7e-68	3	5
ENSCHIP00000027822	SNase	PF00565.17	2.7e-68	4	5
ENSCHIP00000027822	SNase	PF00565.17	2.7e-68	5	5
ENSCHIP00000027816	SNase	PF00565.17	3.8e-68	1	5
ENSCHIP00000027816	SNase	PF00565.17	3.8e-68	2	5
ENSCHIP00000027816	SNase	PF00565.17	3.8e-68	3	5
ENSCHIP00000027816	SNase	PF00565.17	3.8e-68	4	5
ENSCHIP00000027816	SNase	PF00565.17	3.8e-68	5	5
ENSCHIP00000027781	SNase	PF00565.17	3.8e-65	1	5
ENSCHIP00000027781	SNase	PF00565.17	3.8e-65	2	5
ENSCHIP00000027781	SNase	PF00565.17	3.8e-65	3	5
ENSCHIP00000027781	SNase	PF00565.17	3.8e-65	4	5
ENSCHIP00000027781	SNase	PF00565.17	3.8e-65	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000035691	SND1-204	2676	-	ENSCHIP00000027822	891 (aa)	-	UPI000D19782A
ENSCHIT00000035696	SND1-205	2700	-	ENSCHIP00000027827	899 (aa)	-	UPI000D18F361
ENSCHIT00000035685	SND1-203	2622	-	ENSCHIP00000027816	873 (aa)	-	UPI000D18FE53
ENSCHIT00000035637	SND1-201	3153	XM_005679432	ENSCHIP00000027769	910 (aa)	XP_005679489	UPI000846935C
ENSCHIT00000035649	SND1-202	3063	-	ENSCHIP00000027781	880 (aa)	-	UPI000D18CAE3

Gene Model

Click here to download ENSCHIG00000023390's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000023390's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000023390	SND1	100	99.011	ENSG00000197157	SND1	100	99.011	Homo_sapiens
ENSCHIG00000023390	SND1	100	83.882	ENSAPOG00000017599	snd1	99	84.761	Acanthochromis_polyacanthus
ENSCHIG00000023390	SND1	100	98.684	ENSAMEG00000004664	SND1	94	98.684	Ailuropoda_melanoleuca
ENSCHIG00000023390	SND1	98	82.195	ENSACIG00000003551	snd1	99	82.071	Amphilophus_citrinellus
ENSCHIG00000023390	SND1	100	83.662	ENSAOCG00000014166	snd1	99	84.538	Amphiprion_ocellaris
ENSCHIG00000023390	SND1	100	83.662	ENSAPEG00000007067	snd1	99	84.538	Amphiprion_percula
ENSCHIG00000023390	SND1	98	83.017	ENSATEG00000018475	snd1	88	84.265	Anabas_testudineus
ENSCHIG00000023390	SND1	100	99.231	ENSANAG00000034463	SND1	100	99.231	Aotus_nancymaae
ENSCHIG00000023390	SND1	98	84.424	ENSACLG00000022897	snd1	99	84.187	Astatotilapia_calliptera
ENSCHIG00000023390	SND1	99	84.158	ENSAMXG00000016318	snd1	98	84.744	Astyanax_mexicanus
ENSCHIG00000023390	SND1	100	99.560	ENSBTAG00000010692	SND1	100	99.560	Bos_taurus
ENSCHIG00000023390	SND1	98	46.889	WBGene00006626	tsn-1	98	47.091	Caenorhabditis_elegans
ENSCHIG00000023390	SND1	100	99.011	ENSCJAG00000017668	SND1	100	99.011	Callithrix_jacchus
ENSCHIG00000023390	SND1	100	99.121	ENSCAFG00000001700	SND1	100	99.121	Canis_familiaris
ENSCHIG00000023390	SND1	100	99.121	ENSCAFG00020021639	SND1	100	99.121	Canis_lupus_dingo
ENSCHIG00000023390	SND1	74	98.946	ENSTSYG00000004979	SND1	96	99.120	Carlito_syrichta
ENSCHIG00000023390	SND1	99	85.827	ENSCAPG00000010677	SND1	98	85.827	Cavia_aperea
ENSCHIG00000023390	SND1	100	98.462	ENSCPOG00000006251	SND1	100	98.462	Cavia_porcellus
ENSCHIG00000023390	SND1	100	99.341	ENSCCAG00000036847	SND1	100	99.341	Cebus_capucinus
ENSCHIG00000023390	SND1	100	99.231	ENSCATG00000035214	SND1	100	99.231	Cercocebus_atys
ENSCHIG00000023390	SND1	100	98.571	ENSCLAG00000011796	SND1	100	98.571	Chinchilla_lanigera
ENSCHIG00000023390	SND1	100	99.231	ENSCSAG00000010182	SND1	100	99.231	Chlorocebus_sabaeus
ENSCHIG00000023390	SND1	78	91.176	ENSCHOG00000002218	SND1	86	91.176	Choloepus_hoffmanni
ENSCHIG00000023390	SND1	100	92.088	ENSCPBG00000018094	SND1	98	93.049	Chrysemys_picta_bellii
ENSCHIG00000023390	SND1	99	56.575	ENSCING00000000524	-	98	57.254	Ciona_intestinalis
ENSCHIG00000023390	SND1	99	57.866	ENSCSAVG00000008807	-	99	58.011	Ciona_savignyi
ENSCHIG00000023390	SND1	100	99.231	ENSCANG00000035119	SND1	100	99.231	Colobus_angolensis_palliatus
ENSCHIG00000023390	SND1	100	97.473	ENSCGRG00001022514	Snd1	100	97.473	Cricetulus_griseus_chok1gshd
ENSCHIG00000023390	SND1	98	97.511	ENSCGRG00000012277	Snd1	99	97.511	Cricetulus_griseus_crigri
ENSCHIG00000023390	SND1	98	84.340	ENSCSEG00000008661	snd1	98	84.340	Cynoglossus_semilaevis
ENSCHIG00000023390	SND1	100	84.101	ENSCVAG00000010316	snd1	100	83.793	Cyprinodon_variegatus
ENSCHIG00000023390	SND1	100	84.337	ENSDARG00000006766	snd1	97	87.410	Danio_rerio
ENSCHIG00000023390	SND1	98	96.050	ENSDNOG00000006795	SND1	100	96.054	Dasypus_novemcinctus
ENSCHIG00000023390	SND1	100	98.901	ENSDORG00000000336	Snd1	100	98.901	Dipodomys_ordii
ENSCHIG00000023390	SND1	98	50.604	FBgn0035121	Tudor-SN	98	50.595	Drosophila_melanogaster
ENSCHIG00000023390	SND1	91	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSCHIG00000023390	SND1	61	66.142	ENSEBUG00000014201	-	83	77.222	Eptatretus_burgeri
ENSCHIG00000023390	SND1	100	97.516	ENSEASG00005008513	SND1	100	97.516	Equus_asinus_asinus
ENSCHIG00000023390	SND1	100	99.121	ENSECAG00000011451	SND1	100	99.121	Equus_caballus
ENSCHIG00000023390	SND1	100	86.813	ENSEEUG00000014737	SND1	100	86.813	Erinaceus_europaeus
ENSCHIG00000023390	SND1	98	83.183	ENSELUG00000001805	snd1	95	83.055	Esox_lucius
ENSCHIG00000023390	SND1	100	99.121	ENSFCAG00000008289	SND1	100	99.121	Felis_catus
ENSCHIG00000023390	SND1	100	98.681	ENSFDAG00000015881	SND1	100	98.681	Fukomys_damarensis
ENSCHIG00000023390	SND1	99	82.201	ENSFHEG00000004093	snd1	97	84.750	Fundulus_heteroclitus
ENSCHIG00000023390	SND1	66	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
ENSCHIG00000023390	SND1	100	84.320	ENSGAFG00000008421	snd1	99	85.327	Gambusia_affinis
ENSCHIG00000023390	SND1	100	54.072	ENSGACG00000019793	snd1	98	54.535	Gasterosteus_aculeatus
ENSCHIG00000023390	SND1	100	99.231	ENSGGOG00000009614	SND1	100	99.231	Gorilla_gorilla
ENSCHIG00000023390	SND1	99	83.700	ENSHBUG00000019135	snd1	99	84.187	Haplochromis_burtoni
ENSCHIG00000023390	SND1	100	98.352	ENSHGLG00000003618	SND1	100	98.352	Heterocephalus_glaber_female
ENSCHIG00000023390	SND1	99	97.901	ENSHGLG00100012449	SND1	100	97.901	Heterocephalus_glaber_male
ENSCHIG00000023390	SND1	100	82.785	ENSHCOG00000005266	snd1	98	84.004	Hippocampus_comes
ENSCHIG00000023390	SND1	100	82.604	ENSIPUG00000013279	snd1	98	83.630	Ictalurus_punctatus
ENSCHIG00000023390	SND1	100	98.901	ENSSTOG00000002140	SND1	100	98.901	Ictidomys_tridecemlineatus
ENSCHIG00000023390	SND1	100	99.231	ENSJJAG00000009561	Snd1	100	99.231	Jaculus_jaculus
ENSCHIG00000023390	SND1	100	83.882	ENSKMAG00000016997	snd1	98	84.899	Kryptolebias_marmoratus
ENSCHIG00000023390	SND1	100	84.899	ENSLBEG00000013563	snd1	99	83.426	Labrus_bergylta
ENSCHIG00000023390	SND1	99	85.447	ENSLOCG00000015537	snd1	98	85.447	Lepisosteus_oculatus
ENSCHIG00000023390	SND1	100	98.132	ENSLAFG00000009696	SND1	100	98.132	Loxodonta_africana
ENSCHIG00000023390	SND1	100	99.231	ENSMFAG00000038114	SND1	100	99.231	Macaca_fascicularis
ENSCHIG00000023390	SND1	100	99.231	ENSMMUG00000015432	SND1	100	99.231	Macaca_mulatta
ENSCHIG00000023390	SND1	100	99.231	ENSMNEG00000039808	SND1	100	99.231	Macaca_nemestrina
ENSCHIG00000023390	SND1	100	99.121	ENSMLEG00000029040	SND1	100	99.121	Mandrillus_leucophaeus
ENSCHIG00000023390	SND1	99	83.793	ENSMAMG00000011739	snd1	98	84.487	Mastacembelus_armatus
ENSCHIG00000023390	SND1	98	84.424	ENSMZEG00005005681	snd1	99	84.187	Maylandia_zebra
ENSCHIG00000023390	SND1	100	99.011	ENSMICG00000000097	SND1	100	99.011	Microcebus_murinus
ENSCHIG00000023390	SND1	100	98.242	ENSMOCG00000005040	Snd1	100	98.242	Microtus_ochrogaster
ENSCHIG00000023390	SND1	100	83.443	ENSMMOG00000001795	snd1	99	84.316	Mola_mola
ENSCHIG00000023390	SND1	99	95.987	ENSMODG00000015182	SND1	99	95.987	Monodelphis_domestica
ENSCHIG00000023390	SND1	100	83.333	ENSMALG00000012071	snd1	98	84.162	Monopterus_albus
ENSCHIG00000023390	SND1	100	97.912	MGP_CAROLIEiJ_G0028159	Snd1	100	97.912	Mus_caroli
ENSCHIG00000023390	SND1	100	97.692	ENSMUSG00000001424	Snd1	100	97.692	Mus_musculus
ENSCHIG00000023390	SND1	100	97.912	MGP_PahariEiJ_G0021917	Snd1	100	98.145	Mus_pahari
ENSCHIG00000023390	SND1	100	97.912	MGP_SPRETEiJ_G0029159	Snd1	100	97.912	Mus_spretus
ENSCHIG00000023390	SND1	100	98.681	ENSMPUG00000006545	SND1	100	98.681	Mustela_putorius_furo
ENSCHIG00000023390	SND1	98	97.207	ENSMLUG00000017130	SND1	99	97.207	Myotis_lucifugus
ENSCHIG00000023390	SND1	100	98.242	ENSNGAG00000011186	Snd1	100	98.242	Nannospalax_galili
ENSCHIG00000023390	SND1	98	84.312	ENSNBRG00000006681	snd1	99	84.076	Neolamprologus_brichardi
ENSCHIG00000023390	SND1	100	99.121	ENSNLEG00000012263	SND1	100	99.209	Nomascus_leucogenys
ENSCHIG00000023390	SND1	93	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSCHIG00000023390	SND1	100	98.681	ENSODEG00000011502	SND1	100	98.681	Octodon_degus
ENSCHIG00000023390	SND1	98	84.312	ENSONIG00000011481	snd1	96	84.076	Oreochromis_niloticus
ENSCHIG00000023390	SND1	98	94.802	ENSOANG00000000817	SND1	99	93.980	Ornithorhynchus_anatinus
ENSCHIG00000023390	SND1	100	97.692	ENSOCUG00000001620	SND1	100	97.692	Oryctolagus_cuniculus
ENSCHIG00000023390	SND1	98	83.973	ENSORLG00000015201	snd1	99	82.946	Oryzias_latipes
ENSCHIG00000023390	SND1	98	84.086	ENSORLG00020013991	snd1	99	83.056	Oryzias_latipes_hni
ENSCHIG00000023390	SND1	98	84.086	ENSORLG00015012436	snd1	99	83.056	Oryzias_latipes_hsok
ENSCHIG00000023390	SND1	100	83.114	ENSOMEG00000006406	snd1	98	84.340	Oryzias_melastigma
ENSCHIG00000023390	SND1	100	98.684	ENSOGAG00000013356	SND1	94	98.684	Otolemur_garnettii
ENSCHIG00000023390	SND1	98	96.946	ENSOARG00000002149	SND1	100	96.949	Ovis_aries
ENSCHIG00000023390	SND1	100	99.121	ENSPPAG00000042947	SND1	100	99.121	Pan_paniscus
ENSCHIG00000023390	SND1	100	99.121	ENSPPRG00000004494	SND1	100	99.121	Panthera_pardus
ENSCHIG00000023390	SND1	100	99.011	ENSPTIG00000014214	SND1	100	99.011	Panthera_tigris_altaica
ENSCHIG00000023390	SND1	100	99.121	ENSPTRG00000023911	SND1	100	99.121	Pan_troglodytes
ENSCHIG00000023390	SND1	98	99.096	ENSPANG00000011997	SND1	99	99.208	Papio_anubis
ENSCHIG00000023390	SND1	100	81.057	ENSPKIG00000023494	snd1	98	82.131	Paramormyrops_kingsleyae
ENSCHIG00000023390	SND1	93	83.234	ENSPMGG00000003629	snd1	100	83.234	Periophthalmus_magnuspinnatus
ENSCHIG00000023390	SND1	100	98.242	ENSPEMG00000010240	Snd1	100	98.242	Peromyscus_maniculatus_bairdii
ENSCHIG00000023390	SND1	98	73.785	ENSPMAG00000007915	-	99	73.785	Petromyzon_marinus
ENSCHIG00000023390	SND1	100	96.484	ENSPCIG00000011561	SND1	100	96.484	Phascolarctos_cinereus
ENSCHIG00000023390	SND1	100	83.772	ENSPFOG00000001557	snd1	99	84.650	Poecilia_formosa
ENSCHIG00000023390	SND1	100	83.772	ENSPLAG00000018459	snd1	96	84.650	Poecilia_latipinna
ENSCHIG00000023390	SND1	100	84.211	ENSPMEG00000006803	snd1	99	85.095	Poecilia_mexicana
ENSCHIG00000023390	SND1	100	84.101	ENSPREG00000002189	snd1	99	84.983	Poecilia_reticulata
ENSCHIG00000023390	SND1	93	99.007	ENSPPYG00000017972	SND1	100	99.007	Pongo_abelii
ENSCHIG00000023390	SND1	100	86.703	ENSPCAG00000011305	SND1	99	86.622	Procavia_capensis
ENSCHIG00000023390	SND1	100	99.011	ENSPCOG00000026791	SND1	100	99.011	Propithecus_coquereli
ENSCHIG00000023390	SND1	100	97.033	ENSPVAG00000013945	SND1	100	97.033	Pteropus_vampyrus
ENSCHIG00000023390	SND1	98	84.424	ENSPNYG00000000932	snd1	99	84.187	Pundamilia_nyererei
ENSCHIG00000023390	SND1	100	83.589	ENSPNAG00000001206	snd1	98	84.556	Pygocentrus_nattereri
ENSCHIG00000023390	SND1	99	97.577	ENSRNOG00000031173	Snd1	99	97.577	Rattus_norvegicus
ENSCHIG00000023390	SND1	74	99.435	ENSRBIG00000027782	-	93	99.430	Rhinopithecus_bieti
ENSCHIG00000023390	SND1	100	99.231	ENSRROG00000033020	SND1	100	99.231	Rhinopithecus_roxellana
ENSCHIG00000023390	SND1	100	99.231	ENSSBOG00000032461	SND1	100	99.231	Saimiri_boliviensis_boliviensis
ENSCHIG00000023390	SND1	98	93.552	ENSSHAG00000015359	SND1	100	93.131	Sarcophilus_harrisii
ENSCHIG00000023390	SND1	100	82.481	ENSSFOG00015001103	snd1	98	83.574	Scleropages_formosus
ENSCHIG00000023390	SND1	98	83.781	ENSSMAG00000001932	snd1	93	83.519	Scophthalmus_maximus
ENSCHIG00000023390	SND1	100	83.662	ENSSDUG00000002699	snd1	92	84.538	Seriola_dumerili
ENSCHIG00000023390	SND1	100	76.425	ENSSLDG00000001950	snd1	98	77.197	Seriola_lalandi_dorsalis
ENSCHIG00000023390	SND1	87	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSCHIG00000023390	SND1	74	87.847	ENSSPUG00000017586	SND1	96	87.847	Sphenodon_punctatus
ENSCHIG00000023390	SND1	71	86.726	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSCHIG00000023390	SND1	100	99.011	ENSSSCG00000016590	SND1	100	99.011	Sus_scrofa
ENSCHIG00000023390	SND1	98	85.098	ENSTRUG00000014067	snd1	98	83.669	Takifugu_rubripes
ENSCHIG00000023390	SND1	100	83.333	ENSTNIG00000011019	snd1	98	84.340	Tetraodon_nigroviridis
ENSCHIG00000023390	SND1	94	93.042	ENSTBEG00000003999	SND1	100	93.042	Tupaia_belangeri
ENSCHIG00000023390	SND1	100	94.176	ENSTTRG00000006059	SND1	100	94.176	Tursiops_truncatus
ENSCHIG00000023390	SND1	73	89.691	ENSUAMG00000002820	-	87	89.600	Ursus_americanus
ENSCHIG00000023390	SND1	92	98.859	ENSUAMG00000005604	-	93	98.859	Ursus_americanus
ENSCHIG00000023390	SND1	100	98.901	ENSUMAG00000005960	SND1	100	98.901	Ursus_maritimus
ENSCHIG00000023390	SND1	78	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSCHIG00000023390	SND1	100	98.901	ENSVVUG00000007226	SND1	100	98.901	Vulpes_vulpes
ENSCHIG00000023390	SND1	98	84.859	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSCHIG00000023390	SND1	93	81.591	ENSXCOG00000013629	snd1	99	81.591	Xiphophorus_couchianus
ENSCHIG00000023390	SND1	100	84.320	ENSXMAG00000011469	snd1	99	85.206	Xiphophorus_maculatus