EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000023663 (Gene tree)
Gene ID: 102178998
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 4319 bases
Position: chr7:89322428-89326746
Accession: 102178998
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000027954	LSM	PF01423.22	4.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000035822	LSM7-201	312	XM_018050771	ENSCHIP00000027954	103 (aa)	XP_017906260	UPI0000615903

Gene Model

Click here to download ENSCHIG00000023663's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx03018	RNA degradation	KEGG
chx03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000023663's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000023663	LSM7	69	36.620	ENSCHIG00000012507	-	83	36.620
ENSCHIG00000023663	LSM7	66	36.765	ENSCHIG00000009012	-	79	36.765
ENSCHIG00000023663	LSM7	68	37.143	ENSCHIG00000002486	-	82	37.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000023663	LSM7	100	98.058	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSCHIG00000023663	LSM7	92	94.737	ENSAPOG00000015573	lsm7	82	94.737	Acanthochromis_polyacanthus
ENSCHIG00000023663	LSM7	100	99.029	ENSAMEG00000005484	LSM7	100	99.029	Ailuropoda_melanoleuca
ENSCHIG00000023663	LSM7	94	94.845	ENSACIG00000006498	lsm7	77	94.845	Amphilophus_citrinellus
ENSCHIG00000023663	LSM7	99	94.118	ENSAOCG00000001077	lsm7	93	94.118	Amphiprion_ocellaris
ENSCHIG00000023663	LSM7	100	93.204	ENSAPEG00000000694	lsm7	100	93.204	Amphiprion_percula
ENSCHIG00000023663	LSM7	100	95.146	ENSAPEG00000024447	lsm7	92	95.146	Amphiprion_percula
ENSCHIG00000023663	LSM7	100	93.204	ENSATEG00000008557	lsm7	100	93.204	Anabas_testudineus
ENSCHIG00000023663	LSM7	100	89.320	ENSANAG00000022222	-	100	89.320	Aotus_nancymaae
ENSCHIG00000023663	LSM7	100	98.058	ENSANAG00000037196	-	100	98.058	Aotus_nancymaae
ENSCHIG00000023663	LSM7	100	92.233	ENSACLG00000021021	lsm7	100	92.233	Astatotilapia_calliptera
ENSCHIG00000023663	LSM7	100	93.204	ENSAMXG00000037622	lsm7	100	93.204	Astyanax_mexicanus
ENSCHIG00000023663	LSM7	100	98.058	ENSBTAG00000004521	LSM7	100	98.058	Bos_taurus
ENSCHIG00000023663	LSM7	98	56.436	WBGene00003081	lsm-7	97	56.436	Caenorhabditis_elegans
ENSCHIG00000023663	LSM7	54	96.429	ENSCJAG00000039713	-	68	96.429	Callithrix_jacchus
ENSCHIG00000023663	LSM7	99	99.020	ENSCAFG00000019409	LSM7	99	99.020	Canis_familiaris
ENSCHIG00000023663	LSM7	99	99.020	ENSCAFG00020018168	LSM7	75	98.039	Canis_lupus_dingo
ENSCHIG00000023663	LSM7	69	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSCHIG00000023663	LSM7	100	98.058	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSCHIG00000023663	LSM7	98	100.000	ENSCCAG00000035456	LSM7	99	100.000	Cebus_capucinus
ENSCHIG00000023663	LSM7	100	98.058	ENSCATG00000023543	LSM7	100	98.058	Cercocebus_atys
ENSCHIG00000023663	LSM7	100	98.058	ENSCLAG00000011635	LSM7	100	98.058	Chinchilla_lanigera
ENSCHIG00000023663	LSM7	100	98.058	ENSCSAG00000011599	LSM7	100	98.058	Chlorocebus_sabaeus
ENSCHIG00000023663	LSM7	70	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSCHIG00000023663	LSM7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSCHIG00000023663	LSM7	100	98.058	ENSCANG00000035525	LSM7	100	98.058	Colobus_angolensis_palliatus
ENSCHIG00000023663	LSM7	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSCHIG00000023663	LSM7	100	97.087	ENSCGRG00001000807	-	100	97.087	Cricetulus_griseus_chok1gshd
ENSCHIG00000023663	LSM7	99	99.020	ENSCGRG00000014355	-	98	99.020	Cricetulus_griseus_crigri
ENSCHIG00000023663	LSM7	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSCHIG00000023663	LSM7	99	94.118	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSCHIG00000023663	LSM7	99	95.098	ENSCVAG00000021091	lsm7	94	95.098	Cyprinodon_variegatus
ENSCHIG00000023663	LSM7	100	93.204	ENSDARG00000058328	lsm7	100	93.204	Danio_rerio
ENSCHIG00000023663	LSM7	98	98.020	ENSDORG00000024460	Lsm7	99	98.020	Dipodomys_ordii
ENSCHIG00000023663	LSM7	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSCHIG00000023663	LSM7	99	97.059	ENSETEG00000012788	LSM7	100	97.059	Echinops_telfairi
ENSCHIG00000023663	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSCHIG00000023663	LSM7	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSCHIG00000023663	LSM7	100	94.175	ENSECAG00000001440	LSM7	66	94.175	Equus_caballus
ENSCHIG00000023663	LSM7	100	97.087	ENSFCAG00000003445	LSM7	100	97.087	Felis_catus
ENSCHIG00000023663	LSM7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSCHIG00000023663	LSM7	93	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSCHIG00000023663	LSM7	98	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSCHIG00000023663	LSM7	100	93.204	ENSGMOG00000013320	lsm7	100	93.204	Gadus_morhua
ENSCHIG00000023663	LSM7	100	94.175	ENSGAFG00000013902	lsm7	100	94.175	Gambusia_affinis
ENSCHIG00000023663	LSM7	100	93.204	ENSGACG00000010390	lsm7	100	93.204	Gasterosteus_aculeatus
ENSCHIG00000023663	LSM7	100	98.058	ENSGGOG00000010172	LSM7	100	98.058	Gorilla_gorilla
ENSCHIG00000023663	LSM7	99	94.118	ENSHBUG00000004616	lsm7	100	92.233	Haplochromis_burtoni
ENSCHIG00000023663	LSM7	100	98.058	ENSHGLG00000010587	LSM7	100	98.058	Heterocephalus_glaber_female
ENSCHIG00000023663	LSM7	100	98.058	ENSHGLG00100000852	LSM7	100	98.058	Heterocephalus_glaber_male
ENSCHIG00000023663	LSM7	98	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSCHIG00000023663	LSM7	100	93.204	ENSIPUG00000024724	lsm7	100	93.204	Ictalurus_punctatus
ENSCHIG00000023663	LSM7	99	100.000	ENSSTOG00000028372	LSM7	99	100.000	Ictidomys_tridecemlineatus
ENSCHIG00000023663	LSM7	98	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSCHIG00000023663	LSM7	100	94.175	ENSKMAG00000022151	lsm7	100	94.175	Kryptolebias_marmoratus
ENSCHIG00000023663	LSM7	100	93.204	ENSLBEG00000005203	lsm7	100	93.204	Labrus_bergylta
ENSCHIG00000023663	LSM7	100	98.058	ENSLACG00000015700	LSM7	100	98.058	Latimeria_chalumnae
ENSCHIG00000023663	LSM7	100	97.087	ENSLOCG00000004356	lsm7	100	97.087	Lepisosteus_oculatus
ENSCHIG00000023663	LSM7	99	100.000	ENSLAFG00000029302	LSM7	99	100.000	Loxodonta_africana
ENSCHIG00000023663	LSM7	100	98.058	ENSMFAG00000044572	LSM7	100	98.058	Macaca_fascicularis
ENSCHIG00000023663	LSM7	100	98.058	ENSMMUG00000000452	LSM7	99	100.000	Macaca_mulatta
ENSCHIG00000023663	LSM7	100	98.058	ENSMNEG00000004393	LSM7	100	98.058	Macaca_nemestrina
ENSCHIG00000023663	LSM7	100	98.058	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSCHIG00000023663	LSM7	100	92.233	ENSMAMG00000005410	lsm7	100	92.233	Mastacembelus_armatus
ENSCHIG00000023663	LSM7	100	92.233	ENSMZEG00005028055	lsm7	100	92.233	Maylandia_zebra
ENSCHIG00000023663	LSM7	100	96.117	ENSMGAG00000000750	LSM7	89	96.117	Meleagris_gallopavo
ENSCHIG00000023663	LSM7	100	98.058	ENSMAUG00000009276	Lsm7	100	98.058	Mesocricetus_auratus
ENSCHIG00000023663	LSM7	100	98.058	ENSMICG00000028619	-	100	98.058	Microcebus_murinus
ENSCHIG00000023663	LSM7	100	99.029	ENSMICG00000009988	-	100	99.029	Microcebus_murinus
ENSCHIG00000023663	LSM7	100	97.087	ENSMOCG00000016925	Lsm7	100	97.087	Microtus_ochrogaster
ENSCHIG00000023663	LSM7	100	93.204	ENSMMOG00000019645	lsm7	98	93.204	Mola_mola
ENSCHIG00000023663	LSM7	100	97.087	ENSMODG00000004722	LSM7	100	97.087	Monodelphis_domestica
ENSCHIG00000023663	LSM7	100	92.233	ENSMALG00000014511	lsm7	79	92.233	Monopterus_albus
ENSCHIG00000023663	LSM7	100	95.146	MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	Mus_caroli
ENSCHIG00000023663	LSM7	100	95.146	ENSMUSG00000035215	Lsm7	100	95.146	Mus_musculus
ENSCHIG00000023663	LSM7	100	95.146	MGP_PahariEiJ_G0031020	Lsm7	100	95.146	Mus_pahari
ENSCHIG00000023663	LSM7	100	95.146	MGP_SPRETEiJ_G0016425	Lsm7	100	95.146	Mus_spretus
ENSCHIG00000023663	LSM7	100	90.291	ENSMLUG00000024002	-	94	90.291	Myotis_lucifugus
ENSCHIG00000023663	LSM7	100	99.029	ENSMLUG00000013097	-	100	99.029	Myotis_lucifugus
ENSCHIG00000023663	LSM7	100	96.117	ENSNGAG00000021637	Lsm7	100	96.117	Nannospalax_galili
ENSCHIG00000023663	LSM7	99	94.118	ENSNBRG00000015770	lsm7	88	94.118	Neolamprologus_brichardi
ENSCHIG00000023663	LSM7	91	94.681	ENSNBRG00000001237	-	82	93.204	Neolamprologus_brichardi
ENSCHIG00000023663	LSM7	100	98.058	ENSNLEG00000002265	LSM7	100	98.058	Nomascus_leucogenys
ENSCHIG00000023663	LSM7	100	91.262	ENSODEG00000018769	-	100	91.262	Octodon_degus
ENSCHIG00000023663	LSM7	100	77.670	ENSODEG00000008190	-	100	77.670	Octodon_degus
ENSCHIG00000023663	LSM7	100	98.058	ENSODEG00000013590	-	100	98.058	Octodon_degus
ENSCHIG00000023663	LSM7	100	92.233	ENSONIG00000001801	lsm7	89	92.233	Oreochromis_niloticus
ENSCHIG00000023663	LSM7	100	95.146	ENSORLG00000023951	lsm7	100	93.204	Oryzias_latipes
ENSCHIG00000023663	LSM7	100	95.146	ENSORLG00020022226	lsm7	100	93.204	Oryzias_latipes_hni
ENSCHIG00000023663	LSM7	100	95.146	ENSORLG00015020044	lsm7	94	94.118	Oryzias_latipes_hsok
ENSCHIG00000023663	LSM7	100	93.204	ENSOMEG00000012806	lsm7	100	93.204	Oryzias_melastigma
ENSCHIG00000023663	LSM7	100	86.408	ENSOGAG00000024373	-	100	86.408	Otolemur_garnettii
ENSCHIG00000023663	LSM7	99	98.039	ENSOGAG00000000144	-	100	98.039	Otolemur_garnettii
ENSCHIG00000023663	LSM7	100	100.000	ENSOARG00000014013	LSM7	100	100.000	Ovis_aries
ENSCHIG00000023663	LSM7	100	98.058	ENSPPAG00000026500	LSM7	100	98.058	Pan_paniscus
ENSCHIG00000023663	LSM7	100	97.087	ENSPPRG00000008624	LSM7	100	97.087	Panthera_pardus
ENSCHIG00000023663	LSM7	98	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSCHIG00000023663	LSM7	100	98.058	ENSPTRG00000010233	LSM7	100	98.058	Pan_troglodytes
ENSCHIG00000023663	LSM7	100	98.058	ENSPANG00000020668	LSM7	100	98.058	Papio_anubis
ENSCHIG00000023663	LSM7	100	95.146	ENSPKIG00000011325	lsm7	100	95.146	Paramormyrops_kingsleyae
ENSCHIG00000023663	LSM7	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSCHIG00000023663	LSM7	100	93.204	ENSPMGG00000006498	lsm7	100	93.204	Periophthalmus_magnuspinnatus
ENSCHIG00000023663	LSM7	100	97.087	ENSPCIG00000030454	LSM7	99	99.010	Phascolarctos_cinereus
ENSCHIG00000023663	LSM7	100	95.146	ENSPFOG00000012467	lsm7	91	95.146	Poecilia_formosa
ENSCHIG00000023663	LSM7	100	95.146	ENSPLAG00000000252	lsm7	94	95.050	Poecilia_latipinna
ENSCHIG00000023663	LSM7	100	95.146	ENSPMEG00000000587	lsm7	94	95.050	Poecilia_mexicana
ENSCHIG00000023663	LSM7	78	74.074	ENSPREG00000016718	lsm7	65	74.074	Poecilia_reticulata
ENSCHIG00000023663	LSM7	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSCHIG00000023663	LSM7	100	98.058	ENSPCOG00000017177	LSM7	99	100.000	Propithecus_coquereli
ENSCHIG00000023663	LSM7	100	92.233	ENSPNYG00000006938	lsm7	100	92.233	Pundamilia_nyererei
ENSCHIG00000023663	LSM7	100	93.204	ENSPNAG00000010141	lsm7	99	95.050	Pygocentrus_nattereri
ENSCHIG00000023663	LSM7	100	96.117	ENSRNOG00000019552	Lsm7	100	96.117	Rattus_norvegicus
ENSCHIG00000023663	LSM7	100	98.058	ENSRBIG00000035978	LSM7	100	98.058	Rhinopithecus_bieti
ENSCHIG00000023663	LSM7	100	98.058	ENSRROG00000034044	LSM7	100	98.058	Rhinopithecus_roxellana
ENSCHIG00000023663	LSM7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSCHIG00000023663	LSM7	100	98.058	ENSSBOG00000034899	LSM7	100	98.058	Saimiri_boliviensis_boliviensis
ENSCHIG00000023663	LSM7	100	93.204	ENSSFOG00015006728	lsm7	100	93.204	Scleropages_formosus
ENSCHIG00000023663	LSM7	100	94.175	ENSSMAG00000004195	lsm7	94	94.175	Scophthalmus_maximus
ENSCHIG00000023663	LSM7	100	93.204	ENSSDUG00000001863	lsm7	100	93.204	Seriola_dumerili
ENSCHIG00000023663	LSM7	100	93.204	ENSSLDG00000016339	lsm7	100	93.204	Seriola_lalandi_dorsalis
ENSCHIG00000023663	LSM7	100	93.204	ENSSPAG00000015221	lsm7	100	93.204	Stegastes_partitus
ENSCHIG00000023663	LSM7	98	100.000	ENSSSCG00000013463	LSM7	99	100.000	Sus_scrofa
ENSCHIG00000023663	LSM7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSCHIG00000023663	LSM7	100	93.204	ENSTRUG00000022913	lsm7	100	93.204	Takifugu_rubripes
ENSCHIG00000023663	LSM7	100	93.204	ENSTNIG00000015525	lsm7	100	93.204	Tetraodon_nigroviridis
ENSCHIG00000023663	LSM7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSCHIG00000023663	LSM7	100	99.029	ENSUAMG00000000912	LSM7	86	99.029	Ursus_americanus
ENSCHIG00000023663	LSM7	99	98.039	ENSUMAG00000006556	LSM7	80	98.039	Ursus_maritimus
ENSCHIG00000023663	LSM7	69	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSCHIG00000023663	LSM7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSCHIG00000023663	LSM7	98	96.040	ENSXCOG00000002572	lsm7	99	96.040	Xiphophorus_couchianus
ENSCHIG00000023663	LSM7	100	96.117	ENSXMAG00000018630	lsm7	100	94.175	Xiphophorus_maculatus