EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000024290 (Gene tree)
Gene ID: 102173876
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 14271 bases
Position: chr18:27254648-27268918
Accession: 102173876
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000028989	HVSL	PF09749.9	8.5e-63	1	1
ENSCHIP00000028994	HVSL	PF09749.9	2.1e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000036864	USB1-202	777	-	ENSCHIP00000028994	258 (aa)	-	UPI000D1979B9
ENSCHIT00000036859	USB1-201	798	XM_018062059	ENSCHIP00000028989	265 (aa)	XP_017917548	UPI0008471204

Gene Model

Click here to download ENSCHIG00000024290's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000024290's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000024290	USB1	100	83.019	ENSG00000103005	USB1	100	84.579	Homo_sapiens
ENSCHIG00000024290	USB1	98	46.595	ENSAPOG00000011942	usb1	99	46.595	Acanthochromis_polyacanthus
ENSCHIG00000024290	USB1	100	82.528	ENSAMEG00000017205	USB1	100	82.900	Ailuropoda_melanoleuca
ENSCHIG00000024290	USB1	85	53.571	ENSACIG00000012234	usb1	99	49.630	Amphilophus_citrinellus
ENSCHIG00000024290	USB1	97	49.609	ENSAOCG00000014831	usb1	99	47.687	Amphiprion_ocellaris
ENSCHIG00000024290	USB1	97	49.219	ENSAPEG00000000296	usb1	99	47.331	Amphiprion_percula
ENSCHIG00000024290	USB1	98	48.571	ENSATEG00000009348	usb1	99	48.571	Anabas_testudineus
ENSCHIG00000024290	USB1	85	68.584	ENSAPLG00000002756	USB1	100	68.584	Anas_platyrhynchos
ENSCHIG00000024290	USB1	86	62.882	ENSACAG00000015481	USB1	100	62.882	Anolis_carolinensis
ENSCHIG00000024290	USB1	100	82.264	ENSANAG00000035640	USB1	100	82.264	Aotus_nancymaae
ENSCHIG00000024290	USB1	92	51.852	ENSACLG00000020586	usb1	99	48.252	Astatotilapia_calliptera
ENSCHIG00000024290	USB1	84	52.018	ENSAMXG00000040146	usb1	95	45.296	Astyanax_mexicanus
ENSCHIG00000024290	USB1	100	95.472	ENSBTAG00000015758	USB1	100	95.472	Bos_taurus
ENSCHIG00000024290	USB1	100	84.528	ENSCJAG00000011733	USB1	100	84.528	Callithrix_jacchus
ENSCHIG00000024290	USB1	99	80.515	ENSCAFG00000008556	USB1	73	81.250	Canis_familiaris
ENSCHIG00000024290	USB1	99	81.887	ENSCAFG00020009263	USB1	99	81.887	Canis_lupus_dingo
ENSCHIG00000024290	USB1	100	83.396	ENSTSYG00000006997	USB1	100	83.396	Carlito_syrichta
ENSCHIG00000024290	USB1	88	69.828	ENSCAPG00000009057	USB1	100	69.828	Cavia_aperea
ENSCHIG00000024290	USB1	100	80.970	ENSCPOG00000014325	USB1	100	80.970	Cavia_porcellus
ENSCHIG00000024290	USB1	100	83.019	ENSCCAG00000022132	USB1	100	83.019	Cebus_capucinus
ENSCHIG00000024290	USB1	100	84.151	ENSCATG00000032174	USB1	100	84.151	Cercocebus_atys
ENSCHIG00000024290	USB1	66	86.364	ENSCLAG00000007363	USB1	100	86.364	Chinchilla_lanigera
ENSCHIG00000024290	USB1	100	84.151	ENSCSAG00000004783	USB1	100	84.151	Chlorocebus_sabaeus
ENSCHIG00000024290	USB1	92	64.609	ENSCPBG00000026943	USB1	100	62.857	Chrysemys_picta_bellii
ENSCHIG00000024290	USB1	84	33.043	ENSCING00000011490	-	98	30.627	Ciona_intestinalis
ENSCHIG00000024290	USB1	100	82.642	ENSCANG00000037135	USB1	100	82.642	Colobus_angolensis_palliatus
ENSCHIG00000024290	USB1	100	80.597	ENSCGRG00001011243	USB1	100	80.597	Cricetulus_griseus_chok1gshd
ENSCHIG00000024290	USB1	100	80.597	ENSCGRG00000013252	USB1	100	80.597	Cricetulus_griseus_crigri
ENSCHIG00000024290	USB1	98	48.000	ENSCSEG00000013881	usb1	99	48.000	Cynoglossus_semilaevis
ENSCHIG00000024290	USB1	85	49.561	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSCHIG00000024290	USB1	94	48.193	ENSDARG00000003841	usb1	99	46.545	Danio_rerio
ENSCHIG00000024290	USB1	100	78.868	ENSDORG00000001888	Usb1	100	78.868	Dipodomys_ordii
ENSCHIG00000024290	USB1	86	37.500	FBgn0037713	CG16790	97	36.842	Drosophila_melanogaster
ENSCHIG00000024290	USB1	100	69.663	ENSETEG00000019682	USB1	100	69.663	Echinops_telfairi
ENSCHIG00000024290	USB1	84	48.649	ENSEBUG00000005889	usb1	78	48.649	Eptatretus_burgeri
ENSCHIG00000024290	USB1	100	86.792	ENSEASG00005005484	USB1	100	86.792	Equus_asinus_asinus
ENSCHIG00000024290	USB1	100	86.792	ENSECAG00000019493	USB1	91	86.792	Equus_caballus
ENSCHIG00000024290	USB1	100	60.755	ENSEEUG00000000154	USB1	100	60.755	Erinaceus_europaeus
ENSCHIG00000024290	USB1	86	48.684	ENSELUG00000010974	usb1	99	45.421	Esox_lucius
ENSCHIG00000024290	USB1	100	84.270	ENSFCAG00000002693	USB1	100	84.270	Felis_catus
ENSCHIG00000024290	USB1	100	58.273	ENSFALG00000006876	USB1	99	61.338	Ficedula_albicollis
ENSCHIG00000024290	USB1	100	82.022	ENSFDAG00000010052	USB1	100	82.022	Fukomys_damarensis
ENSCHIG00000024290	USB1	85	47.325	ENSFHEG00000012334	usb1	96	47.325	Fundulus_heteroclitus
ENSCHIG00000024290	USB1	84	50.224	ENSGMOG00000004228	usb1	99	50.224	Gadus_morhua
ENSCHIG00000024290	USB1	84	66.964	ENSGALG00000035604	USB1	100	63.158	Gallus_gallus
ENSCHIG00000024290	USB1	98	48.364	ENSGAFG00000021890	usb1	99	48.364	Gambusia_affinis
ENSCHIG00000024290	USB1	94	48.996	ENSGACG00000003257	usb1	99	48.014	Gasterosteus_aculeatus
ENSCHIG00000024290	USB1	100	63.139	ENSGAGG00000022572	USB1	100	63.139	Gopherus_agassizii
ENSCHIG00000024290	USB1	100	83.396	ENSGGOG00000017147	USB1	100	83.396	Gorilla_gorilla
ENSCHIG00000024290	USB1	92	52.263	ENSHBUG00000009823	usb1	99	49.286	Haplochromis_burtoni
ENSCHIG00000024290	USB1	100	82.772	ENSHGLG00000016078	USB1	98	82.772	Heterocephalus_glaber_female
ENSCHIG00000024290	USB1	100	82.772	ENSHGLG00100005562	USB1	98	82.772	Heterocephalus_glaber_male
ENSCHIG00000024290	USB1	82	51.852	ENSHCOG00000015633	usb1	99	49.807	Hippocampus_comes
ENSCHIG00000024290	USB1	97	48.438	ENSIPUG00000008601	usb1	99	47.222	Ictalurus_punctatus
ENSCHIG00000024290	USB1	100	80.586	ENSSTOG00000007548	USB1	100	80.952	Ictidomys_tridecemlineatus
ENSCHIG00000024290	USB1	100	83.521	ENSJJAG00000021859	Usb1	100	83.521	Jaculus_jaculus
ENSCHIG00000024290	USB1	96	47.860	ENSKMAG00000007200	usb1	99	48.043	Kryptolebias_marmoratus
ENSCHIG00000024290	USB1	87	48.052	ENSLBEG00000008452	usb1	82	47.347	Labrus_bergylta
ENSCHIG00000024290	USB1	94	50.385	ENSLACG00000000105	USB1	92	52.075	Latimeria_chalumnae
ENSCHIG00000024290	USB1	95	53.307	ENSLOCG00000000465	usb1	99	51.246	Lepisosteus_oculatus
ENSCHIG00000024290	USB1	100	62.963	ENSLAFG00000002267	USB1	100	63.333	Loxodonta_africana
ENSCHIG00000024290	USB1	100	84.528	ENSMFAG00000003926	USB1	100	84.528	Macaca_fascicularis
ENSCHIG00000024290	USB1	100	84.528	ENSMMUG00000022669	USB1	100	84.528	Macaca_mulatta
ENSCHIG00000024290	USB1	100	84.151	ENSMNEG00000042487	USB1	100	84.151	Macaca_nemestrina
ENSCHIG00000024290	USB1	100	84.528	ENSMLEG00000028756	USB1	100	84.528	Mandrillus_leucophaeus
ENSCHIG00000024290	USB1	98	48.561	ENSMAMG00000015092	usb1	99	48.561	Mastacembelus_armatus
ENSCHIG00000024290	USB1	92	51.852	ENSMZEG00005010008	usb1	99	48.421	Maylandia_zebra
ENSCHIG00000024290	USB1	100	80.524	ENSMAUG00000007832	Usb1	100	80.524	Mesocricetus_auratus
ENSCHIG00000024290	USB1	100	83.774	ENSMICG00000004900	USB1	100	83.774	Microcebus_murinus
ENSCHIG00000024290	USB1	100	79.026	ENSMOCG00000022647	Usb1	100	79.026	Microtus_ochrogaster
ENSCHIG00000024290	USB1	98	50.000	ENSMMOG00000000490	usb1	99	50.000	Mola_mola
ENSCHIG00000024290	USB1	100	66.418	ENSMODG00000014067	USB1	100	66.791	Monodelphis_domestica
ENSCHIG00000024290	USB1	94	50.602	ENSMALG00000005930	usb1	99	46.975	Monopterus_albus
ENSCHIG00000024290	USB1	100	78.652	MGP_CAROLIEiJ_G0031421	Usb1	100	79.646	Mus_caroli
ENSCHIG00000024290	USB1	100	77.903	ENSMUSG00000031792	Usb1	100	78.761	Mus_musculus
ENSCHIG00000024290	USB1	100	78.277	MGP_PahariEiJ_G0023019	Usb1	100	79.487	Mus_pahari
ENSCHIG00000024290	USB1	100	77.903	MGP_SPRETEiJ_G0032540	Usb1	100	77.903	Mus_spretus
ENSCHIG00000024290	USB1	100	81.041	ENSMPUG00000004684	USB1	96	81.041	Mustela_putorius_furo
ENSCHIG00000024290	USB1	87	88.312	ENSMLUG00000007400	USB1	100	88.312	Myotis_lucifugus
ENSCHIG00000024290	USB1	100	82.156	ENSNGAG00000009703	Usb1	100	82.156	Nannospalax_galili
ENSCHIG00000024290	USB1	91	50.000	ENSNBRG00000008747	usb1	99	52.804	Neolamprologus_brichardi
ENSCHIG00000024290	USB1	94	83.200	ENSNLEG00000003340	USB1	100	83.200	Nomascus_leucogenys
ENSCHIG00000024290	USB1	56	59.355	ENSMEUG00000003328	-	100	63.226	Notamacropus_eugenii
ENSCHIG00000024290	USB1	63	87.879	ENSOPRG00000011803	USB1	72	87.879	Ochotona_princeps
ENSCHIG00000024290	USB1	100	79.026	ENSODEG00000016214	USB1	100	79.026	Octodon_degus
ENSCHIG00000024290	USB1	98	49.104	ENSONIG00000011063	usb1	99	49.104	Oreochromis_niloticus
ENSCHIG00000024290	USB1	88	69.362	ENSOANG00000012118	USB1	97	69.362	Ornithorhynchus_anatinus
ENSCHIG00000024290	USB1	94	46.185	ENSORLG00000012479	usb1	99	45.387	Oryzias_latipes
ENSCHIG00000024290	USB1	94	46.185	ENSORLG00020018671	usb1	99	45.185	Oryzias_latipes_hni
ENSCHIG00000024290	USB1	93	44.747	ENSORLG00015009679	usb1	99	45.926	Oryzias_latipes_hsok
ENSCHIG00000024290	USB1	85	49.554	ENSOMEG00000012930	usb1	99	45.091	Oryzias_melastigma
ENSCHIG00000024290	USB1	100	79.845	ENSOGAG00000003273	USB1	100	79.845	Otolemur_garnettii
ENSCHIG00000024290	USB1	95	96.443	ENSOARG00000001107	USB1	97	96.443	Ovis_aries
ENSCHIG00000024290	USB1	100	83.019	ENSPPAG00000042137	USB1	100	83.019	Pan_paniscus
ENSCHIG00000024290	USB1	100	83.521	ENSPPRG00000024797	USB1	100	83.521	Panthera_pardus
ENSCHIG00000024290	USB1	100	83.521	ENSPTIG00000007506	USB1	100	83.521	Panthera_tigris_altaica
ENSCHIG00000024290	USB1	100	78.682	ENSPTRG00000008172	USB1	100	85.047	Pan_troglodytes
ENSCHIG00000024290	USB1	100	84.528	ENSPANG00000025138	USB1	100	84.528	Papio_anubis
ENSCHIG00000024290	USB1	91	51.373	ENSPKIG00000015109	usb1	99	47.797	Paramormyrops_kingsleyae
ENSCHIG00000024290	USB1	84	53.812	ENSPSIG00000004305	USB1	100	53.812	Pelodiscus_sinensis
ENSCHIG00000024290	USB1	84	50.673	ENSPMGG00000017725	usb1	98	47.876	Periophthalmus_magnuspinnatus
ENSCHIG00000024290	USB1	100	79.412	ENSPEMG00000016183	Usb1	100	79.853	Peromyscus_maniculatus_bairdii
ENSCHIG00000024290	USB1	88	51.695	ENSPMAG00000000462	usb1	99	51.695	Petromyzon_marinus
ENSCHIG00000024290	USB1	98	47.653	ENSPFOG00000011130	usb1	99	47.653	Poecilia_formosa
ENSCHIG00000024290	USB1	98	47.292	ENSPLAG00000009820	usb1	99	47.292	Poecilia_latipinna
ENSCHIG00000024290	USB1	98	48.014	ENSPMEG00000006402	usb1	99	48.014	Poecilia_mexicana
ENSCHIG00000024290	USB1	85	48.971	ENSPREG00000001047	usb1	98	48.971	Poecilia_reticulata
ENSCHIG00000024290	USB1	95	79.365	ENSPPYG00000007401	USB1	100	79.365	Pongo_abelii
ENSCHIG00000024290	USB1	100	83.019	ENSPCOG00000022612	USB1	100	83.019	Propithecus_coquereli
ENSCHIG00000024290	USB1	100	82.264	ENSPVAG00000004613	USB1	100	82.264	Pteropus_vampyrus
ENSCHIG00000024290	USB1	92	52.263	ENSPNYG00000022262	usb1	99	49.286	Pundamilia_nyererei
ENSCHIG00000024290	USB1	99	48.106	ENSPNAG00000011736	usb1	89	48.106	Pygocentrus_nattereri
ENSCHIG00000024290	USB1	100	79.026	ENSRNOG00000013216	Usb1	100	79.026	Rattus_norvegicus
ENSCHIG00000024290	USB1	100	79.070	ENSRBIG00000044466	USB1	100	86.449	Rhinopithecus_bieti
ENSCHIG00000024290	USB1	100	83.774	ENSRROG00000029211	USB1	100	83.774	Rhinopithecus_roxellana
ENSCHIG00000024290	USB1	100	83.774	ENSSBOG00000029362	USB1	100	83.774	Saimiri_boliviensis_boliviensis
ENSCHIG00000024290	USB1	83	70.776	ENSSHAG00000006993	USB1	100	66.798	Sarcophilus_harrisii
ENSCHIG00000024290	USB1	87	56.277	ENSSFOG00015023663	usb1	91	49.306	Scleropages_formosus
ENSCHIG00000024290	USB1	98	48.913	ENSSMAG00000015834	usb1	99	47.619	Scophthalmus_maximus
ENSCHIG00000024290	USB1	85	54.911	ENSSDUG00000002949	usb1	99	50.373	Seriola_dumerili
ENSCHIG00000024290	USB1	98	49.421	ENSSLDG00000014174	usb1	99	49.104	Seriola_lalandi_dorsalis
ENSCHIG00000024290	USB1	81	66.355	ENSSPUG00000006741	USB1	100	66.355	Sphenodon_punctatus
ENSCHIG00000024290	USB1	98	45.833	ENSSPAG00000007484	usb1	99	45.936	Stegastes_partitus
ENSCHIG00000024290	USB1	100	86.617	ENSSSCG00000002807	USB1	100	86.617	Sus_scrofa
ENSCHIG00000024290	USB1	79	68.421	ENSTGUG00000004792	USB1	99	61.423	Taeniopygia_guttata
ENSCHIG00000024290	USB1	98	47.388	ENSTRUG00000021069	usb1	99	47.388	Takifugu_rubripes
ENSCHIG00000024290	USB1	98	46.008	ENSTNIG00000000626	usb1	98	46.008	Tetraodon_nigroviridis
ENSCHIG00000024290	USB1	88	58.190	ENSTBEG00000001507	USB1	100	58.190	Tupaia_belangeri
ENSCHIG00000024290	USB1	58	89.167	ENSTTRG00000008429	-	58	89.167	Tursiops_truncatus
ENSCHIG00000024290	USB1	100	82.528	ENSUAMG00000016823	USB1	100	83.271	Ursus_americanus
ENSCHIG00000024290	USB1	81	85.047	ENSUMAG00000021369	USB1	100	85.047	Ursus_maritimus
ENSCHIG00000024290	USB1	77	62.069	ENSVPAG00000009834	-	100	62.069	Vicugna_pacos
ENSCHIG00000024290	USB1	99	81.716	ENSVVUG00000023700	USB1	93	82.917	Vulpes_vulpes
ENSCHIG00000024290	USB1	98	52.692	ENSXETG00000013795	usb1	99	53.846	Xenopus_tropicalis
ENSCHIG00000024290	USB1	94	49.200	ENSXMAG00000024687	usb1	80	48.413	Xiphophorus_maculatus