EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000025005 (Gene tree)
Gene ID: 102184067
Gene Symbol: PRDM12
Alias: PFM9
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 14822 bases
Position: chr11:100425451-100440272
Accession: 102184067
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000030126	zf-C2H2	PF00096.26	1e-12	1	2
ENSCHIP00000030126	zf-C2H2	PF00096.26	1e-12	2	2
ENSCHIP00000030126	zf-met	PF12874.7	8.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000037996	PRDM12-201	1089	XM_018054789	ENSCHIP00000030126	362 (aa)	XP_017910278	UPI0005FBE41C

Gene Model

Click here to download ENSCHIG00000025005's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000025005's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000025005	PRDM12	80	32.188	ENSCHIG00000009297	PRDM14	59	39.189
ENSCHIG00000025005	PRDM12	69	42.353	ENSCHIG00000018772	PRDM5	90	42.353

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000025005	PRDM12	100	97.820	ENSG00000130711	PRDM12	100	97.820	Homo_sapiens
ENSCHIG00000025005	PRDM12	99	75.000	ENSAPOG00000016051	prdm12b	90	80.580	Acanthochromis_polyacanthus
ENSCHIG00000025005	PRDM12	99	63.298	ENSAPOG00000018234	-	93	66.860	Acanthochromis_polyacanthus
ENSCHIG00000025005	PRDM12	89	95.046	ENSAMEG00000016234	PRDM12	99	95.046	Ailuropoda_melanoleuca
ENSCHIG00000025005	PRDM12	99	75.648	ENSACIG00000005193	-	91	80.290	Amphilophus_citrinellus
ENSCHIG00000025005	PRDM12	99	75.597	ENSACIG00000019578	prdm12b	93	79.943	Amphilophus_citrinellus
ENSCHIG00000025005	PRDM12	99	76.316	ENSAOCG00000015040	prdm12b	92	80.286	Amphiprion_ocellaris
ENSCHIG00000025005	PRDM12	100	71.875	ENSAPEG00000022849	-	89	78.363	Amphiprion_percula
ENSCHIG00000025005	PRDM12	99	76.923	ENSAPEG00000015092	prdm12b	92	80.980	Amphiprion_percula
ENSCHIG00000025005	PRDM12	93	80.994	ENSATEG00000014595	-	96	82.371	Anabas_testudineus
ENSCHIG00000025005	PRDM12	94	99.412	ENSANAG00000020616	PRDM12	100	99.412	Aotus_nancymaae
ENSCHIG00000025005	PRDM12	90	81.579	ENSACLG00000007631	-	87	81.579	Astatotilapia_calliptera
ENSCHIG00000025005	PRDM12	99	78.571	ENSACLG00000011876	prdm12b	92	82.440	Astatotilapia_calliptera
ENSCHIG00000025005	PRDM12	99	79.006	ENSAMXG00000008540	PRDM12	90	84.356	Astyanax_mexicanus
ENSCHIG00000025005	PRDM12	99	82.973	ENSAMXG00000033665	prdm12b	90	88.623	Astyanax_mexicanus
ENSCHIG00000025005	PRDM12	100	99.448	ENSBTAG00000023797	PRDM12	100	99.448	Bos_taurus
ENSCHIG00000025005	PRDM12	100	98.895	ENSCJAG00000020540	PRDM12	100	98.895	Callithrix_jacchus
ENSCHIG00000025005	PRDM12	88	98.442	ENSCAFG00000023076	PRDM12	99	98.442	Canis_familiaris
ENSCHIG00000025005	PRDM12	100	99.451	ENSCAFG00020024046	PRDM12	100	99.451	Canis_lupus_dingo
ENSCHIG00000025005	PRDM12	94	92.353	ENSCPOG00000005901	PRDM12	95	98.083	Cavia_porcellus
ENSCHIG00000025005	PRDM12	100	99.174	ENSCCAG00000037485	PRDM12	100	99.174	Cebus_capucinus
ENSCHIG00000025005	PRDM12	100	99.174	ENSCATG00000020327	PRDM12	100	99.174	Cercocebus_atys
ENSCHIG00000025005	PRDM12	92	97.904	ENSCLAG00000005499	PRDM12	92	97.904	Chinchilla_lanigera
ENSCHIG00000025005	PRDM12	100	98.901	ENSCSAG00000014756	PRDM12	100	98.901	Chlorocebus_sabaeus
ENSCHIG00000025005	PRDM12	100	90.055	ENSCPBG00000022628	PRDM12	94	93.413	Chrysemys_picta_bellii
ENSCHIG00000025005	PRDM12	100	98.087	ENSCGRG00001015005	Prdm12	100	98.087	Cricetulus_griseus_chok1gshd
ENSCHIG00000025005	PRDM12	99	77.628	ENSCVAG00000017166	prdm12b	92	82.111	Cyprinodon_variegatus
ENSCHIG00000025005	PRDM12	99	72.308	ENSCVAG00000000944	-	90	77.778	Cyprinodon_variegatus
ENSCHIG00000025005	PRDM12	99	81.818	ENSDARG00000007430	prdm12b	93	86.257	Danio_rerio
ENSCHIG00000025005	PRDM12	99	98.347	ENSDNOG00000042302	PRDM12	99	98.347	Dasypus_novemcinctus
ENSCHIG00000025005	PRDM12	89	62.678	ENSEBUG00000016780	prdm12b	78	64.103	Eptatretus_burgeri
ENSCHIG00000025005	PRDM12	100	99.448	ENSEASG00005008472	PRDM12	100	99.448	Equus_asinus_asinus
ENSCHIG00000025005	PRDM12	100	99.171	ENSECAG00000005933	PRDM12	100	99.171	Equus_caballus
ENSCHIG00000025005	PRDM12	99	80.267	ENSELUG00000009905	prdm12b	91	85.417	Esox_lucius
ENSCHIG00000025005	PRDM12	99	77.008	ENSELUG00000013674	PRDM12	89	83.333	Esox_lucius
ENSCHIG00000025005	PRDM12	100	99.725	ENSFCAG00000043086	PRDM12	100	99.725	Felis_catus
ENSCHIG00000025005	PRDM12	100	90.331	ENSFALG00000001445	PRDM12	84	93.713	Ficedula_albicollis
ENSCHIG00000025005	PRDM12	99	73.846	ENSFHEG00000007746	-	88	80.236	Fundulus_heteroclitus
ENSCHIG00000025005	PRDM12	99	77.273	ENSFHEG00000003944	prdm12b	92	81.686	Fundulus_heteroclitus
ENSCHIG00000025005	PRDM12	92	82.282	ENSGMOG00000011797	prdm12b	94	82.282	Gadus_morhua
ENSCHIG00000025005	PRDM12	100	90.331	ENSGALG00000003895	PRDM12	94	93.713	Gallus_gallus
ENSCHIG00000025005	PRDM12	100	77.333	ENSGAFG00000010827	prdm12b	90	82.596	Gambusia_affinis
ENSCHIG00000025005	PRDM12	100	77.926	ENSGACG00000016713	prdm12b	91	83.432	Gasterosteus_aculeatus
ENSCHIG00000025005	PRDM12	100	90.331	ENSGAGG00000014083	PRDM12	94	93.713	Gopherus_agassizii
ENSCHIG00000025005	PRDM12	100	97.814	ENSGGOG00000010568	PRDM12	100	97.814	Gorilla_gorilla
ENSCHIG00000025005	PRDM12	90	81.579	ENSHBUG00000022537	-	80	81.579	Haplochromis_burtoni
ENSCHIG00000025005	PRDM12	99	77.067	ENSHBUG00000022878	prdm12b	93	80.692	Haplochromis_burtoni
ENSCHIG00000025005	PRDM12	100	96.438	ENSHGLG00000013939	PRDM12	100	96.438	Heterocephalus_glaber_female
ENSCHIG00000025005	PRDM12	90	81.287	ENSHCOG00000003663	prdm12b	89	80.516	Hippocampus_comes
ENSCHIG00000025005	PRDM12	99	73.370	ENSHCOG00000021167	-	95	76.176	Hippocampus_comes
ENSCHIG00000025005	PRDM12	99	82.480	ENSIPUG00000017053	prdm12b	91	87.425	Ictalurus_punctatus
ENSCHIG00000025005	PRDM12	99	76.438	ENSIPUG00000019544	PRDM12	90	82.317	Ictalurus_punctatus
ENSCHIG00000025005	PRDM12	99	95.556	ENSSTOG00000005986	PRDM12	87	99.401	Ictidomys_tridecemlineatus
ENSCHIG00000025005	PRDM12	91	99.091	ENSJJAG00000005424	Prdm12	100	99.091	Jaculus_jaculus
ENSCHIG00000025005	PRDM12	99	76.438	ENSKMAG00000021205	-	92	81.651	Kryptolebias_marmoratus
ENSCHIG00000025005	PRDM12	90	78.492	ENSKMAG00000016921	prdm12b	89	78.771	Kryptolebias_marmoratus
ENSCHIG00000025005	PRDM12	99	75.000	ENSLBEG00000007776	-	89	81.602	Labrus_bergylta
ENSCHIG00000025005	PRDM12	99	76.984	ENSLBEG00000017769	prdm12b	88	84.132	Labrus_bergylta
ENSCHIG00000025005	PRDM12	99	87.258	ENSLACG00000017560	PRDM12	94	90.390	Latimeria_chalumnae
ENSCHIG00000025005	PRDM12	99	82.561	ENSLOCG00000005429	prdm12b	93	86.726	Lepisosteus_oculatus
ENSCHIG00000025005	PRDM12	98	96.667	ENSLAFG00000006979	PRDM12	97	96.667	Loxodonta_africana
ENSCHIG00000025005	PRDM12	100	96.730	ENSMFAG00000040322	PRDM12	100	96.730	Macaca_fascicularis
ENSCHIG00000025005	PRDM12	100	99.174	ENSMNEG00000037234	PRDM12	100	99.174	Macaca_nemestrina
ENSCHIG00000025005	PRDM12	90	81.250	ENSMAMG00000018988	-	86	81.250	Mastacembelus_armatus
ENSCHIG00000025005	PRDM12	99	76.640	ENSMAMG00000013212	prdm12b	90	83.383	Mastacembelus_armatus
ENSCHIG00000025005	PRDM12	90	81.579	ENSMZEG00005000415	PRDM12	86	81.579	Maylandia_zebra
ENSCHIG00000025005	PRDM12	98	90.730	ENSMGAG00000005438	PRDM12	94	93.713	Meleagris_gallopavo
ENSCHIG00000025005	PRDM12	100	96.712	ENSMAUG00000013040	Prdm12	100	96.712	Mesocricetus_auratus
ENSCHIG00000025005	PRDM12	100	98.895	ENSMICG00000015480	PRDM12	100	98.895	Microcebus_murinus
ENSCHIG00000025005	PRDM12	98	96.045	ENSMOCG00000021026	Prdm12	93	98.830	Microtus_ochrogaster
ENSCHIG00000025005	PRDM12	100	92.265	ENSMODG00000012108	PRDM12	94	95.808	Monodelphis_domestica
ENSCHIG00000025005	PRDM12	99	66.935	ENSMALG00000021901	prdm12b	88	71.171	Monopterus_albus
ENSCHIG00000025005	PRDM12	100	98.082	MGP_CAROLIEiJ_G0023414	Prdm12	100	98.082	Mus_caroli
ENSCHIG00000025005	PRDM12	100	98.082	ENSMUSG00000079466	Prdm12	100	98.082	Mus_musculus
ENSCHIG00000025005	PRDM12	100	98.082	MGP_PahariEiJ_G0024871	Prdm12	100	98.082	Mus_pahari
ENSCHIG00000025005	PRDM12	100	98.082	MGP_SPRETEiJ_G0024331	Prdm12	100	98.082	Mus_spretus
ENSCHIG00000025005	PRDM12	100	95.304	ENSNGAG00000018480	Prdm12	100	95.304	Nannospalax_galili
ENSCHIG00000025005	PRDM12	99	76.190	ENSNBRG00000006727	prdm12b	93	80.000	Neolamprologus_brichardi
ENSCHIG00000025005	PRDM12	99	72.849	ENSNBRG00000024312	-	95	76.608	Neolamprologus_brichardi
ENSCHIG00000025005	PRDM12	100	82.044	ENSMEUG00000003828	PRDM12	94	84.731	Notamacropus_eugenii
ENSCHIG00000025005	PRDM12	91	98.788	ENSOPRG00000008680	PRDM12	100	98.788	Ochotona_princeps
ENSCHIG00000025005	PRDM12	95	98.251	ENSODEG00000016282	PRDM12	64	98.251	Octodon_degus
ENSCHIG00000025005	PRDM12	62	90.667	ENSOANG00000001043	PRDM12	91	96.954	Ornithorhynchus_anatinus
ENSCHIG00000025005	PRDM12	86	93.610	ENSOCUG00000008241	PRDM12	98	94.754	Oryctolagus_cuniculus
ENSCHIG00000025005	PRDM12	100	76.253	ENSORLG00000007114	prdm12b	92	80.980	Oryzias_latipes
ENSCHIG00000025005	PRDM12	99	72.051	ENSORLG00000017558	-	87	80.352	Oryzias_latipes
ENSCHIG00000025005	PRDM12	100	76.115	ENSORLG00020019565	prdm12b	91	80.692	Oryzias_latipes_hni
ENSCHIG00000025005	PRDM12	99	71.867	ENSORLG00020013167	-	87	80.117	Oryzias_latipes_hni
ENSCHIG00000025005	PRDM12	99	72.051	ENSORLG00015003435	-	87	80.352	Oryzias_latipes_hsok
ENSCHIG00000025005	PRDM12	100	75.726	ENSORLG00015007621	prdm12b	92	80.747	Oryzias_latipes_hsok
ENSCHIG00000025005	PRDM12	100	75.979	ENSOMEG00000004134	prdm12b	91	80.286	Oryzias_melastigma
ENSCHIG00000025005	PRDM12	99	74.219	ENSOMEG00000007762	-	94	78.632	Oryzias_melastigma
ENSCHIG00000025005	PRDM12	92	100.000	ENSOGAG00000007557	PRDM12	100	100.000	Otolemur_garnettii
ENSCHIG00000025005	PRDM12	79	98.606	ENSPPAG00000031506	-	97	98.606	Pan_paniscus
ENSCHIG00000025005	PRDM12	100	87.879	ENSPPRG00000023024	PRDM12	92	87.879	Panthera_pardus
ENSCHIG00000025005	PRDM12	100	98.087	ENSPTRG00000021475	PRDM12	100	98.087	Pan_troglodytes
ENSCHIG00000025005	PRDM12	100	98.087	ENSPTRG00000043324	-	100	98.087	Pan_troglodytes
ENSCHIG00000025005	PRDM12	100	99.174	ENSPANG00000025967	PRDM12	100	99.174	Papio_anubis
ENSCHIG00000025005	PRDM12	94	78.348	ENSPKIG00000004305	PRDM12	94	80.539	Paramormyrops_kingsleyae
ENSCHIG00000025005	PRDM12	99	81.383	ENSPKIG00000007228	prdm12b	94	85.632	Paramormyrops_kingsleyae
ENSCHIG00000025005	PRDM12	100	89.503	ENSPSIG00000006739	PRDM12	94	92.814	Pelodiscus_sinensis
ENSCHIG00000025005	PRDM12	99	73.368	ENSPMGG00000002356	-	88	80.655	Periophthalmus_magnuspinnatus
ENSCHIG00000025005	PRDM12	100	77.249	ENSPMGG00000008867	prdm12b	92	82.507	Periophthalmus_magnuspinnatus
ENSCHIG00000025005	PRDM12	92	99.096	ENSPEMG00000009969	Prdm12	91	99.096	Peromyscus_maniculatus_bairdii
ENSCHIG00000025005	PRDM12	100	92.541	ENSPCIG00000024119	PRDM12	94	96.108	Phascolarctos_cinereus
ENSCHIG00000025005	PRDM12	99	78.284	ENSPFOG00000019841	prdm12b	93	82.216	Poecilia_formosa
ENSCHIG00000025005	PRDM12	91	83.333	ENSPLAG00000016626	prdm12b	90	82.891	Poecilia_latipinna
ENSCHIG00000025005	PRDM12	97	76.359	ENSPMEG00000016698	prdm12b	89	82.371	Poecilia_mexicana
ENSCHIG00000025005	PRDM12	91	83.186	ENSPREG00000015073	prdm12b	89	82.749	Poecilia_reticulata
ENSCHIG00000025005	PRDM12	96	73.889	ENSPREG00000003211	-	90	77.982	Poecilia_reticulata
ENSCHIG00000025005	PRDM12	97	97.151	ENSPPYG00000019694	PRDM12	100	97.151	Pongo_abelii
ENSCHIG00000025005	PRDM12	100	98.634	ENSPCOG00000022255	PRDM12	100	98.634	Propithecus_coquereli
ENSCHIG00000025005	PRDM12	100	97.814	ENSPVAG00000001511	PRDM12	100	97.814	Pteropus_vampyrus
ENSCHIG00000025005	PRDM12	99	76.393	ENSPNYG00000009607	prdm12b	93	79.943	Pundamilia_nyererei
ENSCHIG00000025005	PRDM12	90	81.579	ENSPNYG00000013589	-	86	81.579	Pundamilia_nyererei
ENSCHIG00000025005	PRDM12	99	74.731	ENSPNAG00000013396	PRDM12	88	80.547	Pygocentrus_nattereri
ENSCHIG00000025005	PRDM12	99	83.424	ENSPNAG00000024532	prdm12b	91	88.922	Pygocentrus_nattereri
ENSCHIG00000025005	PRDM12	100	98.082	ENSRNOG00000009218	Prdm12	100	98.082	Rattus_norvegicus
ENSCHIG00000025005	PRDM12	88	99.369	ENSRBIG00000042712	PRDM12	91	96.960	Rhinopithecus_bieti
ENSCHIG00000025005	PRDM12	89	99.377	ENSRROG00000043554	PRDM12	100	99.377	Rhinopithecus_roxellana
ENSCHIG00000025005	PRDM12	100	91.736	ENSSHAG00000015972	PRDM12	94	95.224	Sarcophilus_harrisii
ENSCHIG00000025005	PRDM12	99	74.036	ENSSMAG00000003754	prdm12b	90	80.342	Scophthalmus_maximus
ENSCHIG00000025005	PRDM12	94	81.395	ENSSDUG00000019071	-	90	83.486	Seriola_dumerili
ENSCHIG00000025005	PRDM12	99	75.258	ENSSDUG00000023498	prdm12b	90	81.214	Seriola_dumerili
ENSCHIG00000025005	PRDM12	99	78.846	ENSSLDG00000013562	-	93	84.356	Seriola_lalandi_dorsalis
ENSCHIG00000025005	PRDM12	99	75.584	ENSSLDG00000009557	prdm12b	90	81.924	Seriola_lalandi_dorsalis
ENSCHIG00000025005	PRDM12	100	89.779	ENSSPUG00000013424	PRDM12	94	93.114	Sphenodon_punctatus
ENSCHIG00000025005	PRDM12	99	76.115	ENSSPAG00000018824	prdm12b	90	81.871	Stegastes_partitus
ENSCHIG00000025005	PRDM12	99	65.544	ENSSPAG00000022420	-	87	74.769	Stegastes_partitus
ENSCHIG00000025005	PRDM12	100	99.451	ENSSSCG00000005703	PRDM12	100	99.451	Sus_scrofa
ENSCHIG00000025005	PRDM12	99	77.660	ENSTRUG00000018659	prdm12b	92	82.405	Takifugu_rubripes
ENSCHIG00000025005	PRDM12	99	75.610	ENSTRUG00000013239	-	93	81.627	Takifugu_rubripes
ENSCHIG00000025005	PRDM12	99	76.022	ENSTNIG00000005859	-	92	80.909	Tetraodon_nigroviridis
ENSCHIG00000025005	PRDM12	99	77.984	ENSTNIG00000009020	prdm12b	91	83.481	Tetraodon_nigroviridis
ENSCHIG00000025005	PRDM12	96	99.140	ENSUAMG00000009653	PRDM12	97	99.140	Ursus_americanus
ENSCHIG00000025005	PRDM12	92	100.000	ENSVVUG00000027662	PRDM12	79	100.000	Vulpes_vulpes
ENSCHIG00000025005	PRDM12	100	77.748	ENSXCOG00000002836	prdm12b	91	82.596	Xiphophorus_couchianus
ENSCHIG00000025005	PRDM12	99	77.333	ENSXMAG00000005537	prdm12b	91	82.111	Xiphophorus_maculatus
ENSCHIG00000025005	PRDM12	99	73.698	ENSXMAG00000028012	-	88	80.294	Xiphophorus_maculatus