EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000025867 (Gene tree)
Gene ID: 102168804
Gene Symbol: SF1
Alias: ZCCHC25|ZFM1|ZNF162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 12634 bases
Position: chr29:43427448-43440081
Accession: 102168804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000031561	KH_1	PF00013.29	2.7e-07	1	1
ENSCHIP00000031565	KH_1	PF00013.29	3.2e-07	1	1
ENSCHIP00000031561	zf-CCHC	PF00098.23	0.00017	1	1
ENSCHIP00000031565	zf-CCHC	PF00098.23	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000039439	SF1-202	1920	XM_018042879	ENSCHIP00000031565	639 (aa)	XP_017898368	UPI000006EB2E
ENSCHIT00000039435	SF1-201	1647	XM_018042878	ENSCHIP00000031561	548 (aa)	XP_017898367	UPI000006D7FA

Gene Model

Click here to download ENSCHIG00000025867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000025867's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000025867	SF1	69	80.670	ENSAPOG00000012341	sf1	60	75.814	Acanthochromis_polyacanthus
ENSCHIG00000025867	SF1	95	99.424	ENSAMEG00000017828	SF1	91	94.737	Ailuropoda_melanoleuca
ENSCHIG00000025867	SF1	58	82.713	ENSACIG00000016514	sf1	62	78.043	Amphilophus_citrinellus
ENSCHIG00000025867	SF1	69	80.155	ENSAOCG00000010934	sf1	61	75.878	Amphiprion_ocellaris
ENSCHIG00000025867	SF1	69	80.155	ENSAPEG00000009498	sf1	61	75.878	Amphiprion_percula
ENSCHIG00000025867	SF1	58	82.105	ENSATEG00000001894	sf1	60	77.327	Anabas_testudineus
ENSCHIG00000025867	SF1	96	87.255	ENSANAG00000022607	-	99	87.562	Aotus_nancymaae
ENSCHIG00000025867	SF1	100	99.844	ENSANAG00000026664	-	100	99.844	Aotus_nancymaae
ENSCHIG00000025867	SF1	67	84.282	ENSACLG00000007633	sf1	61	79.562	Astatotilapia_calliptera
ENSCHIG00000025867	SF1	67	86.096	ENSAMXG00000003630	sf1	50	79.218	Astyanax_mexicanus
ENSCHIG00000025867	SF1	100	100.000	ENSBTAG00000001035	SF1	100	100.000	Bos_taurus
ENSCHIG00000025867	SF1	100	100.000	ENSCJAG00000002780	SF1	100	100.000	Callithrix_jacchus
ENSCHIG00000025867	SF1	97	99.622	ENSCAFG00000014239	SF1	94	99.666	Canis_familiaris
ENSCHIG00000025867	SF1	100	100.000	ENSCAFG00020014381	SF1	100	100.000	Canis_lupus_dingo
ENSCHIG00000025867	SF1	56	98.925	ENSTSYG00000033618	SF1	82	98.925	Carlito_syrichta
ENSCHIG00000025867	SF1	80	98.636	ENSCAPG00000010762	SF1	79	98.636	Cavia_aperea
ENSCHIG00000025867	SF1	98	99.628	ENSCPOG00000012290	SF1	100	99.628	Cavia_porcellus
ENSCHIG00000025867	SF1	98	100.000	ENSCCAG00000037881	SF1	96	100.000	Cebus_capucinus
ENSCHIG00000025867	SF1	96	85.009	ENSCCAG00000023781	-	90	87.879	Cebus_capucinus
ENSCHIG00000025867	SF1	100	100.000	ENSCATG00000011564	SF1	100	100.000	Cercocebus_atys
ENSCHIG00000025867	SF1	100	100.000	ENSCSAG00000007258	SF1	100	100.000	Chlorocebus_sabaeus
ENSCHIG00000025867	SF1	75	93.689	ENSCHOG00000006008	SF1	79	93.780	Choloepus_hoffmanni
ENSCHIG00000025867	SF1	94	86.654	ENSCPBG00000023763	SF1	66	85.300	Chrysemys_picta_bellii
ENSCHIG00000025867	SF1	69	58.115	ENSCING00000005564	-	74	60.372	Ciona_intestinalis
ENSCHIG00000025867	SF1	93	53.372	ENSCSAVG00000009055	-	56	66.667	Ciona_savignyi
ENSCHIG00000025867	SF1	100	100.000	ENSCANG00000042201	SF1	100	100.000	Colobus_angolensis_palliatus
ENSCHIG00000025867	SF1	100	99.531	ENSCGRG00001003677	Sf1	100	99.531	Cricetulus_griseus_chok1gshd
ENSCHIG00000025867	SF1	98	99.255	ENSCGRG00000001708	Sf1	99	99.255	Cricetulus_griseus_crigri
ENSCHIG00000025867	SF1	62	78.571	ENSCSEG00000014375	sf1	57	76.513	Cynoglossus_semilaevis
ENSCHIG00000025867	SF1	68	84.324	ENSCVAG00000001670	sf1	63	78.973	Cyprinodon_variegatus
ENSCHIG00000025867	SF1	79	81.390	ENSDARG00000008188	sf1	72	78.788	Danio_rerio
ENSCHIG00000025867	SF1	100	99.453	ENSDNOG00000001282	SF1	100	99.453	Dasypus_novemcinctus
ENSCHIG00000025867	SF1	100	100.000	ENSDORG00000016334	Sf1	100	100.000	Dipodomys_ordii
ENSCHIG00000025867	SF1	95	91.313	ENSETEG00000012830	SF1	82	91.453	Echinops_telfairi
ENSCHIG00000025867	SF1	100	99.635	ENSEASG00005018272	SF1	100	99.635	Equus_asinus_asinus
ENSCHIG00000025867	SF1	100	99.818	ENSECAG00000024544	SF1	100	99.818	Equus_caballus
ENSCHIG00000025867	SF1	72	99.237	ENSEEUG00000001058	SF1	100	99.237	Erinaceus_europaeus
ENSCHIG00000025867	SF1	67	81.432	ENSELUG00000013225	sf1	54	78.230	Esox_lucius
ENSCHIG00000025867	SF1	98	100.000	ENSFCAG00000012231	SF1	94	99.666	Felis_catus
ENSCHIG00000025867	SF1	94	96.705	ENSFDAG00000009833	SF1	89	95.652	Fukomys_damarensis
ENSCHIG00000025867	SF1	69	80.670	ENSFHEG00000022656	sf1	61	76.102	Fundulus_heteroclitus
ENSCHIG00000025867	SF1	60	87.941	ENSGMOG00000007469	sf1	62	87.941	Gadus_morhua
ENSCHIG00000025867	SF1	69	83.896	ENSGAFG00000019284	sf1	78	80.238	Gambusia_affinis
ENSCHIG00000025867	SF1	70	80.759	ENSGACG00000000826	sf1	68	76.722	Gasterosteus_aculeatus
ENSCHIG00000025867	SF1	83	89.011	ENSGAGG00000021691	SF1	72	85.300	Gopherus_agassizii
ENSCHIG00000025867	SF1	58	82.895	ENSHBUG00000011598	sf1	61	77.262	Haplochromis_burtoni
ENSCHIG00000025867	SF1	97	99.622	ENSHGLG00000009541	SF1	94	99.666	Heterocephalus_glaber_female
ENSCHIG00000025867	SF1	79	89.195	ENSHGLG00100008076	-	87	87.037	Heterocephalus_glaber_male
ENSCHIG00000025867	SF1	84	86.765	ENSHGLG00100008255	-	94	86.555	Heterocephalus_glaber_male
ENSCHIG00000025867	SF1	90	96.951	ENSHGLG00100013879	-	93	96.579	Heterocephalus_glaber_male
ENSCHIG00000025867	SF1	69	81.088	ENSHCOG00000011388	sf1	58	76.755	Hippocampus_comes
ENSCHIG00000025867	SF1	94	89.168	ENSSTOG00000024353	-	77	89.168	Ictidomys_tridecemlineatus
ENSCHIG00000025867	SF1	98	100.000	ENSSTOG00000009790	-	100	100.000	Ictidomys_tridecemlineatus
ENSCHIG00000025867	SF1	100	99.844	ENSJJAG00000011788	Sf1	100	99.844	Jaculus_jaculus
ENSCHIG00000025867	SF1	60	82.398	ENSKMAG00000005854	sf1	63	77.283	Kryptolebias_marmoratus
ENSCHIG00000025867	SF1	75	82.461	ENSLBEG00000019836	sf1	52	86.053	Labrus_bergylta
ENSCHIG00000025867	SF1	76	78.333	ENSLACG00000018493	SF1	74	78.554	Latimeria_chalumnae
ENSCHIG00000025867	SF1	68	84.881	ENSLOCG00000002130	sf1	59	80.049	Lepisosteus_oculatus
ENSCHIG00000025867	SF1	95	99.232	ENSLAFG00000007201	SF1	90	99.654	Loxodonta_africana
ENSCHIG00000025867	SF1	100	100.000	ENSMFAG00000033122	SF1	100	100.000	Macaca_fascicularis
ENSCHIG00000025867	SF1	100	100.000	ENSMMUG00000022606	SF1	100	100.000	Macaca_mulatta
ENSCHIG00000025867	SF1	100	100.000	ENSMNEG00000037901	SF1	100	100.000	Macaca_nemestrina
ENSCHIG00000025867	SF1	98	100.000	ENSMLEG00000040706	SF1	95	100.000	Mandrillus_leucophaeus
ENSCHIG00000025867	SF1	59	81.347	ENSMAMG00000001780	sf1	58	77.966	Mastacembelus_armatus
ENSCHIG00000025867	SF1	58	82.632	ENSMZEG00005009196	sf1	61	77.030	Maylandia_zebra
ENSCHIG00000025867	SF1	97	99.055	ENSMAUG00000014064	Sf1	94	99.165	Mesocricetus_auratus
ENSCHIG00000025867	SF1	100	99.844	ENSMICG00000001202	SF1	100	99.844	Microcebus_murinus
ENSCHIG00000025867	SF1	97	98.866	ENSMOCG00000022038	Sf1	94	98.998	Microtus_ochrogaster
ENSCHIG00000025867	SF1	67	81.720	ENSMMOG00000020474	sf1	60	76.399	Mola_mola
ENSCHIG00000025867	SF1	82	94.407	ENSMODG00000029407	SF1	97	94.407	Monodelphis_domestica
ENSCHIG00000025867	SF1	68	82.888	ENSMALG00000020521	sf1	68	76.359	Monopterus_albus
ENSCHIG00000025867	SF1	100	99.453	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSCHIG00000025867	SF1	100	99.453	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSCHIG00000025867	SF1	100	99.453	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSCHIG00000025867	SF1	100	99.453	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSCHIG00000025867	SF1	100	98.748	ENSMPUG00000012684	SF1	100	98.748	Mustela_putorius_furo
ENSCHIG00000025867	SF1	83	94.530	ENSMLUG00000029800	-	78	94.934	Myotis_lucifugus
ENSCHIG00000025867	SF1	99	99.683	ENSMLUG00000015217	-	99	99.683	Myotis_lucifugus
ENSCHIG00000025867	SF1	97	99.433	ENSNGAG00000005550	Sf1	94	99.499	Nannospalax_galili
ENSCHIG00000025867	SF1	68	83.690	ENSNBRG00000017606	sf1	60	79.562	Neolamprologus_brichardi
ENSCHIG00000025867	SF1	100	99.844	ENSNLEG00000005236	-	100	99.844	Nomascus_leucogenys
ENSCHIG00000025867	SF1	97	98.493	ENSMEUG00000013424	SF1	100	98.493	Notamacropus_eugenii
ENSCHIG00000025867	SF1	90	99.394	ENSOPRG00000005008	SF1	100	99.394	Ochotona_princeps
ENSCHIG00000025867	SF1	92	93.857	ENSODEG00000006102	-	90	93.857	Octodon_degus
ENSCHIG00000025867	SF1	58	82.895	ENSONIG00000015728	sf1	61	77.262	Oreochromis_niloticus
ENSCHIG00000025867	SF1	74	86.700	ENSOANG00000002909	SF1	96	87.724	Ornithorhynchus_anatinus
ENSCHIG00000025867	SF1	95	99.424	ENSOCUG00000026486	SF1	94	99.492	Oryctolagus_cuniculus
ENSCHIG00000025867	SF1	70	80.563	ENSORLG00000011853	sf1	58	76.739	Oryzias_latipes
ENSCHIG00000025867	SF1	71	79.250	ENSORLG00020011834	sf1	60	75.587	Oryzias_latipes_hni
ENSCHIG00000025867	SF1	68	80.105	ENSORLG00015012855	sf1	59	76.499	Oryzias_latipes_hsok
ENSCHIG00000025867	SF1	60	80.051	ENSOMEG00000005210	sf1	60	77.458	Oryzias_melastigma
ENSCHIG00000025867	SF1	97	99.622	ENSOGAG00000016196	SF1	94	99.499	Otolemur_garnettii
ENSCHIG00000025867	SF1	96	95.298	ENSOARG00000009166	SF1	97	95.298	Ovis_aries
ENSCHIG00000025867	SF1	96	100.000	ENSPPAG00000002799	-	100	100.000	Pan_paniscus
ENSCHIG00000025867	SF1	98	100.000	ENSPPRG00000013566	SF1	100	100.000	Panthera_pardus
ENSCHIG00000025867	SF1	82	98.434	ENSPTIG00000016141	SF1	80	98.876	Panthera_tigris_altaica
ENSCHIG00000025867	SF1	98	100.000	ENSPTRG00000003846	SF1	99	100.000	Pan_troglodytes
ENSCHIG00000025867	SF1	100	100.000	ENSPANG00000020754	SF1	100	100.000	Papio_anubis
ENSCHIG00000025867	SF1	60	79.580	ENSPKIG00000012116	sf1	88	74.499	Paramormyrops_kingsleyae
ENSCHIG00000025867	SF1	64	87.179	ENSPSIG00000003610	SF1	97	75.490	Pelodiscus_sinensis
ENSCHIG00000025867	SF1	97	99.055	ENSPEMG00000010463	Sf1	94	99.165	Peromyscus_maniculatus_bairdii
ENSCHIG00000025867	SF1	64	69.714	ENSPMAG00000008272	sf1	53	66.938	Petromyzon_marinus
ENSCHIG00000025867	SF1	100	98.905	ENSPCIG00000018173	SF1	100	98.905	Phascolarctos_cinereus
ENSCHIG00000025867	SF1	69	85.752	ENSPFOG00000013683	sf1	68	81.146	Poecilia_formosa
ENSCHIG00000025867	SF1	67	83.862	ENSPLAG00000018076	sf1	61	79.187	Poecilia_latipinna
ENSCHIG00000025867	SF1	67	83.862	ENSPMEG00000005726	sf1	62	79.426	Poecilia_mexicana
ENSCHIG00000025867	SF1	68	82.940	ENSPREG00000004155	sf1	59	78.708	Poecilia_reticulata
ENSCHIG00000025867	SF1	97	99.622	ENSPPYG00000003098	-	99	100.000	Pongo_abelii
ENSCHIG00000025867	SF1	98	99.257	ENSPCAG00000013631	SF1	80	99.257	Procavia_capensis
ENSCHIG00000025867	SF1	100	99.844	ENSPCOG00000027546	SF1	100	99.844	Propithecus_coquereli
ENSCHIG00000025867	SF1	98	99.442	ENSPVAG00000016938	SF1	81	99.442	Pteropus_vampyrus
ENSCHIG00000025867	SF1	58	82.632	ENSPNYG00000004673	sf1	59	78.199	Pundamilia_nyererei
ENSCHIG00000025867	SF1	68	85.450	ENSPNAG00000013072	sf1	59	78.606	Pygocentrus_nattereri
ENSCHIG00000025867	SF1	100	99.374	ENSRNOG00000021085	Sf1	100	99.374	Rattus_norvegicus
ENSCHIG00000025867	SF1	100	95.931	ENSRBIG00000042818	SF1	100	95.931	Rhinopithecus_bieti
ENSCHIG00000025867	SF1	95	100.000	ENSRROG00000045655	SF1	100	100.000	Rhinopithecus_roxellana
ENSCHIG00000025867	SF1	53	43.421	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSCHIG00000025867	SF1	97	80.417	ENSSBOG00000022267	-	99	81.731	Saimiri_boliviensis_boliviensis
ENSCHIG00000025867	SF1	74	91.951	ENSSHAG00000006841	SF1	75	93.171	Sarcophilus_harrisii
ENSCHIG00000025867	SF1	72	80.451	ENSSFOG00015021978	sf1	55	77.053	Scleropages_formosus
ENSCHIG00000025867	SF1	75	76.112	ENSSMAG00000007549	sf1	63	76.526	Scophthalmus_maximus
ENSCHIG00000025867	SF1	94	95.745	ENSSARG00000008180	SF1	100	95.745	Sorex_araneus
ENSCHIG00000025867	SF1	80	85.403	ENSSPUG00000012907	SF1	86	81.382	Sphenodon_punctatus
ENSCHIG00000025867	SF1	69	80.155	ENSSPAG00000019060	sf1	61	75.878	Stegastes_partitus
ENSCHIG00000025867	SF1	100	99.844	ENSSSCG00000013021	SF1	100	99.844	Sus_scrofa
ENSCHIG00000025867	SF1	97	61.878	ENSTNIG00000004820	sf1	80	69.789	Tetraodon_nigroviridis
ENSCHIG00000025867	SF1	96	84.804	ENSTBEG00000013133	SF1	79	100.000	Tupaia_belangeri
ENSCHIG00000025867	SF1	98	95.717	ENSTTRG00000008857	SF1	100	95.717	Tursiops_truncatus
ENSCHIG00000025867	SF1	82	97.137	ENSUAMG00000011977	SF1	100	97.137	Ursus_americanus
ENSCHIG00000025867	SF1	84	100.000	ENSUMAG00000007268	SF1	89	100.000	Ursus_maritimus
ENSCHIG00000025867	SF1	65	100.000	ENSVPAG00000011912	SF1	66	100.000	Vicugna_pacos
ENSCHIG00000025867	SF1	100	100.000	ENSVVUG00000028585	SF1	100	100.000	Vulpes_vulpes
ENSCHIG00000025867	SF1	97	69.545	ENSXETG00000008434	sf1	68	81.553	Xenopus_tropicalis
ENSCHIG00000025867	SF1	67	85.205	ENSXCOG00000003704	sf1	75	80.941	Xiphophorus_couchianus
ENSCHIG00000025867	SF1	68	83.377	ENSXMAG00000007822	sf1	61	79.426	Xiphophorus_maculatus