EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000026004 (Gene tree)
Gene ID: 102189069
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Minus strand
Length: 52222 bases
Position: chr19:53252677-53304898
Accession: 102189069
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000031809	Ago_hook	PF10427.9	1.3e-21	1	1
ENSCHIP00000031824	Ago_hook	PF10427.9	1.8e-21	1	1
ENSCHIP00000031828	Ago_hook	PF10427.9	5.6e-21	1	1
ENSCHIP00000031840	Ago_hook	PF10427.9	5.6e-21	1	1
ENSCHIP00000031852	Ago_hook	PF10427.9	1e-17	1	1
ENSCHIP00000031845	Ago_hook	PF10427.9	8.7e-10	1	1
ENSCHIP00000031845	RRM_1	PF00076.22	0.00026	1	1
ENSCHIP00000031828	RRM_1	PF00076.22	0.00026	1	1
ENSCHIP00000031840	RRM_1	PF00076.22	0.00026	1	1
ENSCHIP00000031852	RRM_1	PF00076.22	0.00027	1	1
ENSCHIP00000031824	RRM_1	PF00076.22	0.00031	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000039703	TNRC6C-203	5564	-	ENSCHIP00000031828	1672 (aa)	-	UPI000D19098F
ENSCHIT00000039715	TNRC6C-204	5561	-	ENSCHIP00000031840	1671 (aa)	-	UPI000D19517F
ENSCHIT00000039683	TNRC6C-201	5808	XM_018063705	ENSCHIP00000031809	1935 (aa)	XP_017919194	UPI000D18BFFF
ENSCHIT00000039727	TNRC6C-206	5079	-	ENSCHIP00000031852	1692 (aa)	-	UPI000D190C32
ENSCHIT00000039699	TNRC6C-202	5691	XM_018063708	ENSCHIP00000031824	1896 (aa)	XP_017919197	UPI000D196368
ENSCHIT00000039720	TNRC6C-205	5495	-	ENSCHIP00000031845	1649 (aa)	-	UPI000D18F30A

Gene Model

Click here to download ENSCHIG00000026004's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000026004's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000026004	TNRC6C	97	43.496	ENSCHIG00000019448	TNRC6A	88	48.504
ENSCHIG00000026004	TNRC6C	99	35.495	ENSCHIG00000003491	TNRC6B	99	34.532

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000026004	TNRC6C	100	86.126	ENSG00000078687	TNRC6C	100	87.581	Homo_sapiens
ENSCHIG00000026004	TNRC6C	95	53.556	ENSAPOG00000019749	tnrc6c1	98	49.568	Acanthochromis_polyacanthus
ENSCHIG00000026004	TNRC6C	100	84.558	ENSAMEG00000013756	TNRC6C	99	86.744	Ailuropoda_melanoleuca
ENSCHIG00000026004	TNRC6C	94	52.177	ENSACIG00000008075	tnrc6c1	97	53.203	Amphilophus_citrinellus
ENSCHIG00000026004	TNRC6C	85	67.840	ENSAOCG00000023968	tnrc6c1	91	72.279	Amphiprion_ocellaris
ENSCHIG00000026004	TNRC6C	88	55.641	ENSAPEG00000009020	tnrc6c1	99	49.069	Amphiprion_percula
ENSCHIG00000026004	TNRC6C	100	83.247	ENSAPLG00000005456	TNRC6C	100	82.909	Anas_platyrhynchos
ENSCHIG00000026004	TNRC6C	100	84.411	ENSACAG00000016198	TNRC6C	98	82.723	Anolis_carolinensis
ENSCHIG00000026004	TNRC6C	100	85.412	ENSANAG00000021554	TNRC6C	100	87.160	Aotus_nancymaae
ENSCHIG00000026004	TNRC6C	100	48.662	ENSACLG00000000424	tnrc6c1	98	52.642	Astatotilapia_calliptera
ENSCHIG00000026004	TNRC6C	100	98.947	ENSBTAG00000018658	TNRC6C	100	97.507	Bos_taurus
ENSCHIG00000026004	TNRC6C	100	85.529	ENSCJAG00000019431	TNRC6C	100	86.805	Callithrix_jacchus
ENSCHIG00000026004	TNRC6C	98	89.297	ENSCAFG00000005224	TNRC6C	99	89.192	Canis_familiaris
ENSCHIG00000026004	TNRC6C	100	88.142	ENSCAFG00020006661	TNRC6C	100	88.487	Canis_lupus_dingo
ENSCHIG00000026004	TNRC6C	100	85.797	ENSTSYG00000005403	TNRC6C	100	88.290	Carlito_syrichta
ENSCHIG00000026004	TNRC6C	100	80.601	ENSCAPG00000007307	TNRC6C	99	81.390	Cavia_aperea
ENSCHIG00000026004	TNRC6C	100	84.906	ENSCPOG00000000467	TNRC6C	100	86.290	Cavia_porcellus
ENSCHIG00000026004	TNRC6C	100	86.118	ENSCCAG00000030524	TNRC6C	100	87.515	Cebus_capucinus
ENSCHIG00000026004	TNRC6C	100	86.118	ENSCATG00000033135	TNRC6C	100	87.574	Cercocebus_atys
ENSCHIG00000026004	TNRC6C	100	86.380	ENSCLAG00000011139	TNRC6C	99	87.206	Chinchilla_lanigera
ENSCHIG00000026004	TNRC6C	98	87.317	ENSCSAG00000005167	TNRC6C	99	87.264	Chlorocebus_sabaeus
ENSCHIG00000026004	TNRC6C	75	87.395	ENSCHOG00000000088	TNRC6C	75	90.792	Choloepus_hoffmanni
ENSCHIG00000026004	TNRC6C	100	84.019	ENSCPBG00000027960	TNRC6C	100	84.242	Chrysemys_picta_bellii
ENSCHIG00000026004	TNRC6C	100	85.882	ENSCANG00000041771	TNRC6C	97	90.806	Colobus_angolensis_palliatus
ENSCHIG00000026004	TNRC6C	100	85.681	ENSCGRG00001022686	Tnrc6c	100	85.074	Cricetulus_griseus_chok1gshd
ENSCHIG00000026004	TNRC6C	100	85.681	ENSCGRG00000018041	Tnrc6c	100	85.074	Cricetulus_griseus_crigri
ENSCHIG00000026004	TNRC6C	94	53.986	ENSCSEG00000012744	tnrc6c1	98	47.435	Cynoglossus_semilaevis
ENSCHIG00000026004	TNRC6C	98	51.158	ENSDARG00000076847	tnrc6c1	96	54.844	Danio_rerio
ENSCHIG00000026004	TNRC6C	100	86.575	ENSDNOG00000003247	TNRC6C	99	84.801	Dasypus_novemcinctus
ENSCHIG00000026004	TNRC6C	100	84.226	ENSDORG00000004558	Tnrc6c	100	83.873	Dipodomys_ordii
ENSCHIG00000026004	TNRC6C	90	79.498	ENSETEG00000005527	TNRC6C	90	81.675	Echinops_telfairi
ENSCHIG00000026004	TNRC6C	100	89.953	ENSEASG00005004799	TNRC6C	100	89.430	Equus_asinus_asinus
ENSCHIG00000026004	TNRC6C	100	93.575	ENSECAG00000012486	TNRC6C	100	88.670	Equus_caballus
ENSCHIG00000026004	TNRC6C	96	84.843	ENSEEUG00000010008	TNRC6C	96	86.586	Erinaceus_europaeus
ENSCHIG00000026004	TNRC6C	100	87.294	ENSFCAG00000028358	TNRC6C	100	88.698	Felis_catus
ENSCHIG00000026004	TNRC6C	100	81.301	ENSFALG00000000848	TNRC6C	100	82.112	Ficedula_albicollis
ENSCHIG00000026004	TNRC6C	100	86.733	ENSFDAG00000010368	TNRC6C	100	87.730	Fukomys_damarensis
ENSCHIG00000026004	TNRC6C	94	50.948	ENSFHEG00000002936	tnrc6c1	99	47.464	Fundulus_heteroclitus
ENSCHIG00000026004	TNRC6C	100	84.409	ENSGALG00000001725	TNRC6C	100	84.510	Gallus_gallus
ENSCHIG00000026004	TNRC6C	100	50.668	ENSGAFG00000019019	tnrc6c1	99	47.905	Gambusia_affinis
ENSCHIG00000026004	TNRC6C	97	46.837	ENSGACG00000012320	tnrc6c1	97	47.156	Gasterosteus_aculeatus
ENSCHIG00000026004	TNRC6C	100	84.713	ENSGAGG00000022043	TNRC6C	99	83.655	Gopherus_agassizii
ENSCHIG00000026004	TNRC6C	100	85.479	ENSGGOG00000011304	TNRC6C	100	86.872	Gorilla_gorilla
ENSCHIG00000026004	TNRC6C	100	50.237	ENSHBUG00000010846	tnrc6c1	98	53.010	Haplochromis_burtoni
ENSCHIG00000026004	TNRC6C	100	86.792	ENSHGLG00000004809	TNRC6C	99	87.373	Heterocephalus_glaber_female
ENSCHIG00000026004	TNRC6C	100	86.557	ENSHGLG00100012597	TNRC6C	99	86.787	Heterocephalus_glaber_male
ENSCHIG00000026004	TNRC6C	98	52.422	ENSIPUG00000000818	tnrc6c1	98	52.037	Ictalurus_punctatus
ENSCHIG00000026004	TNRC6C	100	85.697	ENSSTOG00000009101	TNRC6C	100	86.486	Ictidomys_tridecemlineatus
ENSCHIG00000026004	TNRC6C	100	84.973	ENSJJAG00000017055	Tnrc6c	99	84.141	Jaculus_jaculus
ENSCHIG00000026004	TNRC6C	94	50.831	ENSKMAG00000021023	tnrc6c1	97	50.448	Kryptolebias_marmoratus
ENSCHIG00000026004	TNRC6C	100	71.454	ENSLACG00000015283	TNRC6C	100	72.945	Latimeria_chalumnae
ENSCHIG00000026004	TNRC6C	98	70.565	ENSLOCG00000013377	tnrc6c1	85	76.898	Lepisosteus_oculatus
ENSCHIG00000026004	TNRC6C	100	87.131	ENSLAFG00000011122	TNRC6C	99	87.300	Loxodonta_africana
ENSCHIG00000026004	TNRC6C	100	86.176	ENSMFAG00000043943	TNRC6C	100	87.633	Macaca_fascicularis
ENSCHIG00000026004	TNRC6C	100	86.176	ENSMMUG00000011924	TNRC6C	100	87.633	Macaca_mulatta
ENSCHIG00000026004	TNRC6C	100	86.235	ENSMNEG00000030405	TNRC6C	100	87.692	Macaca_nemestrina
ENSCHIG00000026004	TNRC6C	100	86.176	ENSMLEG00000033436	TNRC6C	100	87.633	Mandrillus_leucophaeus
ENSCHIG00000026004	TNRC6C	80	55.943	ENSMAMG00000023613	tnrc6c1	93	61.094	Mastacembelus_armatus
ENSCHIG00000026004	TNRC6C	100	50.102	ENSMZEG00005010920	tnrc6c1	98	52.642	Maylandia_zebra
ENSCHIG00000026004	TNRC6C	100	74.942	ENSMGAG00000003906	TNRC6C	100	76.819	Meleagris_gallopavo
ENSCHIG00000026004	TNRC6C	100	84.915	ENSMAUG00000021618	Tnrc6c	100	85.310	Mesocricetus_auratus
ENSCHIG00000026004	TNRC6C	100	87.000	ENSMICG00000003952	TNRC6C	100	88.462	Microcebus_murinus
ENSCHIG00000026004	TNRC6C	100	86.270	ENSMOCG00000015879	Tnrc6c	100	86.471	Microtus_ochrogaster
ENSCHIG00000026004	TNRC6C	93	54.513	ENSMMOG00000005203	tnrc6c1	97	50.263	Mola_mola
ENSCHIG00000026004	TNRC6C	100	82.273	ENSMODG00000001785	TNRC6C	99	81.896	Monodelphis_domestica
ENSCHIG00000026004	TNRC6C	100	86.270	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	86.471	Mus_caroli
ENSCHIG00000026004	TNRC6C	100	85.798	ENSMUSG00000025571	Tnrc6c	100	85.953	Mus_musculus
ENSCHIG00000026004	TNRC6C	100	86.211	MGP_PahariEiJ_G0018593	Tnrc6c	100	86.413	Mus_pahari
ENSCHIG00000026004	TNRC6C	100	85.857	MGP_SPRETEiJ_G0018309	Tnrc6c	100	86.010	Mus_spretus
ENSCHIG00000026004	TNRC6C	98	87.618	ENSMPUG00000013348	TNRC6C	97	87.513	Mustela_putorius_furo
ENSCHIG00000026004	TNRC6C	100	81.615	ENSMLUG00000014431	TNRC6C	97	82.573	Myotis_lucifugus
ENSCHIG00000026004	TNRC6C	100	85.849	ENSNGAG00000012203	Tnrc6c	99	85.874	Nannospalax_galili
ENSCHIG00000026004	TNRC6C	100	50.034	ENSNBRG00000005344	tnrc6c1	98	53.500	Neolamprologus_brichardi
ENSCHIG00000026004	TNRC6C	99	84.659	ENSNLEG00000000047	TNRC6C	99	84.295	Nomascus_leucogenys
ENSCHIG00000026004	TNRC6C	97	78.342	ENSMEUG00000005104	TNRC6C	100	76.928	Notamacropus_eugenii
ENSCHIG00000026004	TNRC6C	100	86.498	ENSODEG00000012499	TNRC6C	100	87.900	Octodon_degus
ENSCHIG00000026004	TNRC6C	89	52.417	ENSONIG00000002210	tnrc6c1	96	54.968	Oreochromis_niloticus
ENSCHIG00000026004	TNRC6C	99	62.295	ENSOANG00000009758	-	89	76.050	Ornithorhynchus_anatinus
ENSCHIG00000026004	TNRC6C	82	80.619	ENSOCUG00000006122	TNRC6C	94	72.233	Oryctolagus_cuniculus
ENSCHIG00000026004	TNRC6C	91	50.277	ENSORLG00000009837	tnrc6c1	100	68.401	Oryzias_latipes
ENSCHIG00000026004	TNRC6C	91	51.295	ENSORLG00020016510	tnrc6c1	95	57.430	Oryzias_latipes_hni
ENSCHIG00000026004	TNRC6C	75	41.971	ENSORLG00015000171	tnrc6c1	84	61.034	Oryzias_latipes_hsok
ENSCHIG00000026004	TNRC6C	89	63.728	ENSOMEG00000000357	tnrc6c1	84	63.991	Oryzias_melastigma
ENSCHIG00000026004	TNRC6C	100	84.380	ENSOGAG00000007197	TNRC6C	100	86.551	Otolemur_garnettii
ENSCHIG00000026004	TNRC6C	96	99.061	ENSOARG00000006041	TNRC6C	97	96.501	Ovis_aries
ENSCHIG00000026004	TNRC6C	100	86.118	ENSPPAG00000027160	TNRC6C	100	87.574	Pan_paniscus
ENSCHIG00000026004	TNRC6C	100	87.471	ENSPPRG00000018881	TNRC6C	100	88.876	Panthera_pardus
ENSCHIG00000026004	TNRC6C	90	80.786	ENSPTIG00000008791	TNRC6C	91	81.963	Panthera_tigris_altaica
ENSCHIG00000026004	TNRC6C	100	86.118	ENSPTRG00000009699	TNRC6C	100	87.574	Pan_troglodytes
ENSCHIG00000026004	TNRC6C	100	86.329	ENSPANG00000019994	TNRC6C	100	87.789	Papio_anubis
ENSCHIG00000026004	TNRC6C	57	62.707	ENSPKIG00000005428	tnrc6c1	98	51.539	Paramormyrops_kingsleyae
ENSCHIG00000026004	TNRC6C	100	81.283	ENSPSIG00000018069	TNRC6C	100	82.519	Pelodiscus_sinensis
ENSCHIG00000026004	TNRC6C	74	57.082	ENSPMGG00000022911	tnrc6c1	97	64.082	Periophthalmus_magnuspinnatus
ENSCHIG00000026004	TNRC6C	100	86.093	ENSPEMG00000009785	Tnrc6c	99	86.042	Peromyscus_maniculatus_bairdii
ENSCHIG00000026004	TNRC6C	58	79.342	ENSPCIG00000017421	-	94	85.047	Phascolarctos_cinereus
ENSCHIG00000026004	TNRC6C	100	48.946	ENSPFOG00000012560	tnrc6c1	97	57.354	Poecilia_formosa
ENSCHIG00000026004	TNRC6C	97	51.863	ENSPLAG00000021055	tnrc6c1	93	60.041	Poecilia_latipinna
ENSCHIG00000026004	TNRC6C	98	87.945	ENSPPYG00000008679	TNRC6C	97	87.893	Pongo_abelii
ENSCHIG00000026004	TNRC6C	90	92.891	ENSPCAG00000012510	TNRC6C	94	92.891	Procavia_capensis
ENSCHIG00000026004	TNRC6C	100	87.294	ENSPCOG00000021451	TNRC6C	100	88.698	Propithecus_coquereli
ENSCHIG00000026004	TNRC6C	96	92.373	ENSPVAG00000002008	TNRC6C	95	92.373	Pteropus_vampyrus
ENSCHIG00000026004	TNRC6C	100	50.000	ENSPNYG00000014477	tnrc6c1	98	52.171	Pundamilia_nyererei
ENSCHIG00000026004	TNRC6C	100	85.462	ENSRNOG00000022395	Tnrc6c	100	86.442	Rattus_norvegicus
ENSCHIG00000026004	TNRC6C	100	86.059	ENSRBIG00000027777	TNRC6C	100	87.515	Rhinopithecus_bieti
ENSCHIG00000026004	TNRC6C	100	86.118	ENSRROG00000042912	TNRC6C	100	87.574	Rhinopithecus_roxellana
ENSCHIG00000026004	TNRC6C	98	86.900	ENSSBOG00000023981	TNRC6C	100	87.196	Saimiri_boliviensis_boliviensis
ENSCHIG00000026004	TNRC6C	56	84.392	ENSSHAG00000018330	-	100	88.299	Sarcophilus_harrisii
ENSCHIG00000026004	TNRC6C	92	57.469	ENSSFOG00015006475	tnrc6c1	99	51.563	Scleropages_formosus
ENSCHIG00000026004	TNRC6C	77	48.182	ENSSFOG00015004735	-	99	62.565	Scleropages_formosus
ENSCHIG00000026004	TNRC6C	100	48.247	ENSSMAG00000012761	tnrc6c1	99	50.116	Scophthalmus_maximus
ENSCHIG00000026004	TNRC6C	94	51.437	ENSSDUG00000002366	tnrc6c1	99	49.568	Seriola_dumerili
ENSCHIG00000026004	TNRC6C	94	49.792	ENSSLDG00000025613	tnrc6c1	92	59.278	Seriola_lalandi_dorsalis
ENSCHIG00000026004	TNRC6C	91	91.810	ENSSARG00000006816	TNRC6C	91	91.630	Sorex_araneus
ENSCHIG00000026004	TNRC6C	83	80.319	ENSSPUG00000007341	TNRC6C	99	82.582	Sphenodon_punctatus
ENSCHIG00000026004	TNRC6C	87	55.381	ENSSPAG00000014977	tnrc6c1	98	47.898	Stegastes_partitus
ENSCHIG00000026004	TNRC6C	100	87.651	ENSSSCG00000034373	TNRC6C	100	92.520	Sus_scrofa
ENSCHIG00000026004	TNRC6C	100	83.225	ENSTGUG00000007733	TNRC6C	100	84.359	Taeniopygia_guttata
ENSCHIG00000026004	TNRC6C	78	55.348	ENSTRUG00000011685	tnrc6c1	97	50.146	Takifugu_rubripes
ENSCHIG00000026004	TNRC6C	95	52.924	ENSTNIG00000005273	tnrc6c1	100	61.095	Tetraodon_nigroviridis
ENSCHIG00000026004	TNRC6C	64	89.844	ENSTBEG00000005046	TNRC6C	95	89.844	Tupaia_belangeri
ENSCHIG00000026004	TNRC6C	100	90.695	ENSTTRG00000010828	TNRC6C	99	91.484	Tursiops_truncatus
ENSCHIG00000026004	TNRC6C	100	88.439	ENSUMAG00000013614	TNRC6C	99	86.632	Ursus_maritimus
ENSCHIG00000026004	TNRC6C	52	80.565	ENSVPAG00000006765	-	100	83.657	Vicugna_pacos
ENSCHIG00000026004	TNRC6C	100	89.665	ENSVVUG00000015268	TNRC6C	100	89.970	Vulpes_vulpes
ENSCHIG00000026004	TNRC6C	100	71.654	ENSXETG00000019470	tnrc6c	100	72.663	Xenopus_tropicalis
ENSCHIG00000026004	TNRC6C	100	49.971	ENSXMAG00000025971	tnrc6c1	94	57.356	Xiphophorus_maculatus