EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCHIG00000026308 (Gene tree)
Gene ID
102176822
Gene Symbol
RPA1
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A1
Gene Type
protein_coding
Species
Capra_hircus
Status
putative
Strand
Plus strand
Length
43423 bases
Position
chr19:22696660-22740082
Accession
102176822
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCHIP00000032279tRNA_anti-codonPF01336.252.7e-1211
ENSCHIP00000032277tRNA_anti-codonPF01336.252.9e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCHIT00000040154RPA1-2021854-ENSCHIP00000032279617 (aa)-UPI000D195E2B
ENSCHIT00000040152RPA1-2011851XM_018064402ENSCHIP00000032277616 (aa)XP_017919891UPI0006B13925
Gene Model
Click here to download ENSCHIG00000026308's gene model file
Pathways
Pathway IDPathway NameSource
chx03030DNA replicationKEGG
chx03420Nucleotide excision repairKEGG
chx03430Mismatch repairKEGG
chx03440Homologous recombinationKEGG
chx03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000026308's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCHIG00000026308RPA19959.336ENSAPOG00000019409RPA18962.162Acanthochromis_polyacanthus
ENSCHIG00000026308RPA19962.255ENSAPOG00000011658rpa19962.255Acanthochromis_polyacanthus
ENSCHIG00000026308RPA19991.133ENSAMEG00000007706RPA19891.269Ailuropoda_melanoleuca
ENSCHIG00000026308RPA19658.065ENSACIG00000007277rpa19957.458Amphilophus_citrinellus
ENSCHIG00000026308RPA19557.336ENSACIG00000012881RPA19956.780Amphilophus_citrinellus
ENSCHIG00000026308RPA19954.475ENSAOCG00000009003RPA19953.763Amphiprion_ocellaris
ENSCHIG00000026308RPA19963.443ENSAOCG00000023376rpa19963.103Amphiprion_ocellaris
ENSCHIG00000026308RPA19952.941ENSAPEG00000019132RPA19952.402Amphiprion_percula
ENSCHIG00000026308RPA19963.279ENSAPEG00000008634rpa19963.040Amphiprion_percula
ENSCHIG00000026308RPA19563.979ENSATEG00000022024rpa19963.979Anabas_testudineus
ENSCHIG00000026308RPA19954.128ENSATEG00000006443RPA110051.807Anabas_testudineus
ENSCHIG00000026308RPA19865.436ENSAPLG00000012442RPA110065.583Anas_platyrhynchos
ENSCHIG00000026308RPA19964.136ENSACAG00000014490RPA19964.943Anolis_carolinensis
ENSCHIG00000026308RPA19890.547ENSANAG00000023456RPA110090.547Aotus_nancymaae
ENSCHIG00000026308RPA19364.174ENSACLG00000006640rpa19964.174Astatotilapia_calliptera
ENSCHIG00000026308RPA19957.367ENSACLG00000005223RPA19956.426Astatotilapia_calliptera
ENSCHIG00000026308RPA19961.951ENSAMXG00000008418rpa19961.851Astyanax_mexicanus
ENSCHIG00000026308RPA110098.539ENSBTAG00000009711RPA110098.539Bos_taurus
ENSCHIG00000026308RPA110090.097ENSCJAG00000001848RPA110090.097Callithrix_jacchus
ENSCHIG00000026308RPA110092.208ENSCAFG00000019249RPA110092.208Canis_familiaris
ENSCHIG00000026308RPA110092.208ENSCAFG00020009847RPA110092.208Canis_lupus_dingo
ENSCHIG00000026308RPA110090.924ENSTSYG00000003482-10090.924Carlito_syrichta
ENSCHIG00000026308RPA110086.851ENSCPOG00000000035RPA110086.851Cavia_porcellus
ENSCHIG00000026308RPA110079.254ENSCCAG00000010981RPA110079.092Cebus_capucinus
ENSCHIG00000026308RPA110084.253ENSCLAG00000015045-10084.253Chinchilla_lanigera
ENSCHIG00000026308RPA19988.455ENSCLAG00000005185-10088.455Chinchilla_lanigera
ENSCHIG00000026308RPA110078.282ENSCSAG00000013833RPA110078.282Chlorocebus_sabaeus
ENSCHIG00000026308RPA17192.938ENSCHOG00000009454-10092.938Choloepus_hoffmanni
ENSCHIG00000026308RPA19588.776ENSCHOG00000013540-10088.776Choloepus_hoffmanni
ENSCHIG00000026308RPA19977.561ENSCPBG00000020377RPA19977.504Chrysemys_picta_bellii
ENSCHIG00000026308RPA19941.408ENSCING00000023482-9841.396Ciona_intestinalis
ENSCHIG00000026308RPA19886.942ENSCANG00000030911RPA110086.942Colobus_angolensis_palliatus
ENSCHIG00000026308RPA19988.835ENSCGRG00001008197Rpa19988.350Cricetulus_griseus_chok1gshd
ENSCHIG00000026308RPA18187.574ENSCGRG00000000582Rpa19986.982Cricetulus_griseus_crigri
ENSCHIG00000026308RPA19951.597ENSCSEG00000012726RPA19851.701Cynoglossus_semilaevis
ENSCHIG00000026308RPA19961.047ENSCSEG00000013066rpa19961.047Cynoglossus_semilaevis
ENSCHIG00000026308RPA19962.927ENSCVAG00000019431rpa19963.573Cyprinodon_variegatus
ENSCHIG00000026308RPA19553.406ENSCVAG00000013446-9652.477Cyprinodon_variegatus
ENSCHIG00000026308RPA19963.961ENSDARG00000003938rpa19963.799Danio_rerio
ENSCHIG00000026308RPA19891.419ENSDNOG00000017218RPA19891.419Dasypus_novemcinctus
ENSCHIG00000026308RPA110089.123ENSDORG00000006199Rpa110089.123Dipodomys_ordii
ENSCHIG00000026308RPA19942.811FBgn0010173RpA-709842.811Drosophila_melanogaster
ENSCHIG00000026308RPA18388.542ENSETEG00000017608RPA18288.542Echinops_telfairi
ENSCHIG00000026308RPA19992.508ENSEASG00005009372RPA19992.508Equus_asinus_asinus
ENSCHIG00000026308RPA110092.857ENSECAG00000023886RPA110092.857Equus_caballus
ENSCHIG00000026308RPA16892.857ENSEEUG00000002186-6892.857Erinaceus_europaeus
ENSCHIG00000026308RPA19961.650ENSELUG00000021071rpa19961.489Esox_lucius
ENSCHIG00000026308RPA18855.147ENSELUG00000006136RPA19955.147Esox_lucius
ENSCHIG00000026308RPA110089.465ENSFCAG00000006306RPA19989.465Felis_catus
ENSCHIG00000026308RPA110074.798ENSFALG00000006575RPA19974.637Ficedula_albicollis
ENSCHIG00000026308RPA19988.436ENSFDAG00000007720RPA19988.436Fukomys_damarensis
ENSCHIG00000026308RPA19960.877ENSFHEG00000003580rpa19960.714Fundulus_heteroclitus
ENSCHIG00000026308RPA19958.525ENSGMOG00000010382rpa19958.525Gadus_morhua
ENSCHIG00000026308RPA110074.716ENSGALG00000003072RPA19974.716Gallus_gallus
ENSCHIG00000026308RPA19961.866ENSGAFG00000012916rpa19961.664Gambusia_affinis
ENSCHIG00000026308RPA19954.407ENSGAFG00000020953RPA19954.103Gambusia_affinis
ENSCHIG00000026308RPA19960.940ENSGACG00000010856rpa19960.813Gasterosteus_aculeatus
ENSCHIG00000026308RPA19977.561ENSGAGG00000013611RPA19976.873Gopherus_agassizii
ENSCHIG00000026308RPA110087.500ENSGGOG00000014186RPA110087.500Gorilla_gorilla
ENSCHIG00000026308RPA19653.667ENSHBUG00000009348RPA19953.667Haplochromis_burtoni
ENSCHIG00000026308RPA19963.175ENSHBUG00000017773rpa19962.643Haplochromis_burtoni
ENSCHIG00000026308RPA19988.599ENSHGLG00000008846RPA110088.599Heterocephalus_glaber_female
ENSCHIG00000026308RPA19988.599ENSHGLG00100017755-10088.599Heterocephalus_glaber_male
ENSCHIG00000026308RPA110083.117ENSHGLG00100000799-10083.117Heterocephalus_glaber_male
ENSCHIG00000026308RPA110075.325ENSHGLG00100002005-10075.325Heterocephalus_glaber_male
ENSCHIG00000026308RPA19960.806ENSHCOG00000001401rpa19961.264Hippocampus_comes
ENSCHIG00000026308RPA19944.065ENSHCOG00000000351RPA19844.065Hippocampus_comes
ENSCHIG00000026308RPA19961.874ENSIPUG00000004400rpa19961.851Ictalurus_punctatus
ENSCHIG00000026308RPA19984.878ENSSTOG00000022475RPA19984.878Ictidomys_tridecemlineatus
ENSCHIG00000026308RPA19589.116ENSJJAG00000000876Rpa19889.116Jaculus_jaculus
ENSCHIG00000026308RPA19961.951ENSKMAG00000005605rpa19961.951Kryptolebias_marmoratus
ENSCHIG00000026308RPA19954.397ENSKMAG00000000234RPA19954.397Kryptolebias_marmoratus
ENSCHIG00000026308RPA19958.958ENSLBEG00000002281RPA17961.451Labrus_bergylta
ENSCHIG00000026308RPA19962.193ENSLBEG00000021604rpa19961.866Labrus_bergylta
ENSCHIG00000026308RPA18165.800ENSLACG00000007210RPA19965.600Latimeria_chalumnae
ENSCHIG00000026308RPA19967.317ENSLOCG00000006397rpa19966.992Lepisosteus_oculatus
ENSCHIG00000026308RPA19989.677ENSLAFG00000015354RPA19989.677Loxodonta_africana
ENSCHIG00000026308RPA18290.514ENSMFAG00000036138-10090.514Macaca_fascicularis
ENSCHIG00000026308RPA19890.248ENSMMUG00000011604-10090.248Macaca_mulatta
ENSCHIG00000026308RPA110082.982ENSMMUG00000002442-10082.143Macaca_mulatta
ENSCHIG00000026308RPA18989.333ENSMNEG00000029837-10089.333Macaca_nemestrina
ENSCHIG00000026308RPA110086.851ENSMNEG00000031632-10086.851Macaca_nemestrina
ENSCHIG00000026308RPA19884.211ENSMLEG00000038768-10084.211Mandrillus_leucophaeus
ENSCHIG00000026308RPA19951.632ENSMAMG00000020097RPA19160.491Mastacembelus_armatus
ENSCHIG00000026308RPA19963.011ENSMAMG00000017993rpa19962.848Mastacembelus_armatus
ENSCHIG00000026308RPA19957.367ENSMZEG00005024731RPA19956.426Maylandia_zebra
ENSCHIG00000026308RPA19963.175ENSMZEG00005007551rpa19962.643Maylandia_zebra
ENSCHIG00000026308RPA19974.230ENSMGAG00000005315RPA19974.230Meleagris_gallopavo
ENSCHIG00000026308RPA19789.667ENSMAUG00000010474Rpa19989.667Mesocricetus_auratus
ENSCHIG00000026308RPA110091.234ENSMICG00000012867RPA110091.234Microcebus_murinus
ENSCHIG00000026308RPA19988.581ENSMOCG00000013019Rpa19988.581Microtus_ochrogaster
ENSCHIG00000026308RPA19961.501ENSMMOG00000014292rpa19962.331Mola_mola
ENSCHIG00000026308RPA19755.927ENSMMOG00000010868RPA19759.471Mola_mola
ENSCHIG00000026308RPA19983.577ENSMODG00000010549RPA19983.577Monodelphis_domestica
ENSCHIG00000026308RPA19559.911ENSMALG00000001208RPA17959.735Monopterus_albus
ENSCHIG00000026308RPA19963.666ENSMALG00000011453rpa19962.848Monopterus_albus
ENSCHIG00000026308RPA19987.175MGP_CAROLIEiJ_G0016734Rpa19986.526Mus_caroli
ENSCHIG00000026308RPA19984.887ENSMUSG00000000751Rpa19983.762Mus_musculus
ENSCHIG00000026308RPA19988.045MGP_PahariEiJ_G0017871Rpa19987.237Mus_pahari
ENSCHIG00000026308RPA19984.912MGP_SPRETEiJ_G0017577Rpa19983.628Mus_spretus
ENSCHIG00000026308RPA110091.721ENSMPUG00000013119RPA110091.721Mustela_putorius_furo
ENSCHIG00000026308RPA110088.567ENSMLUG00000006113RPA110088.567Myotis_lucifugus
ENSCHIG00000026308RPA19985.413ENSNGAG00000004522Rpa19488.625Nannospalax_galili
ENSCHIG00000026308RPA19854.876ENSNBRG00000009672RPA19754.380Neolamprologus_brichardi
ENSCHIG00000026308RPA19463.966ENSNBRG00000020595rpa19963.966Neolamprologus_brichardi
ENSCHIG00000026308RPA110089.286ENSNLEG00000017149RPA110089.286Nomascus_leucogenys
ENSCHIG00000026308RPA19873.223ENSMEUG00000006714RPA19972.893Notamacropus_eugenii
ENSCHIG00000026308RPA110083.200ENSODEG00000009038RPA110083.200Octodon_degus
ENSCHIG00000026308RPA19963.371ENSONIG00000013135rpa19963.005Oreochromis_niloticus
ENSCHIG00000026308RPA19883.582ENSOANG00000010880RPA19983.748Ornithorhynchus_anatinus
ENSCHIG00000026308RPA110086.997ENSOCUG00000001504RPA110086.997Oryctolagus_cuniculus
ENSCHIG00000026308RPA19953.599ENSORLG00000003368RPA19953.588Oryzias_latipes
ENSCHIG00000026308RPA19962.951ENSORLG00000004856rpa19962.459Oryzias_latipes
ENSCHIG00000026308RPA19952.331ENSORLG00020015284RPA18860.042Oryzias_latipes_hni
ENSCHIG00000026308RPA19963.115ENSORLG00020008980rpa19962.623Oryzias_latipes_hni
ENSCHIG00000026308RPA19963.115ENSORLG00015013982rpa19962.623Oryzias_latipes_hsok
ENSCHIG00000026308RPA19954.290ENSORLG00015020383RPA19953.894Oryzias_latipes_hsok
ENSCHIG00000026308RPA17160.000ENSORLG00015005867-9860.000Oryzias_latipes_hsok
ENSCHIG00000026308RPA19961.311ENSOMEG00000004704rpa19960.720Oryzias_melastigma
ENSCHIG00000026308RPA19954.067ENSOMEG00000011040RPA110055.746Oryzias_melastigma
ENSCHIG00000026308RPA19488.070ENSOGAG00000029379-10088.070Otolemur_garnettii
ENSCHIG00000026308RPA110090.909ENSOGAG00000005581-10090.909Otolemur_garnettii
ENSCHIG00000026308RPA110099.838ENSOARG00000014479RPA110099.838Ovis_aries
ENSCHIG00000026308RPA110090.422ENSPPAG00000039680RPA110090.422Pan_paniscus
ENSCHIG00000026308RPA110089.141ENSPPRG00000011807RPA19989.141Panthera_pardus
ENSCHIG00000026308RPA110088.979ENSPTIG00000007898RPA19988.979Panthera_tigris_altaica
ENSCHIG00000026308RPA110090.422ENSPTRG00000008539RPA110090.422Pan_troglodytes
ENSCHIG00000026308RPA110090.097ENSPANG00000024592RPA110090.097Papio_anubis
ENSCHIG00000026308RPA19461.063ENSPKIG00000008053rpa19461.407Paramormyrops_kingsleyae
ENSCHIG00000026308RPA19776.628ENSPSIG00000015617RPA19976.461Pelodiscus_sinensis
ENSCHIG00000026308RPA19953.462ENSPMGG00000000543RPA19955.575Periophthalmus_magnuspinnatus
ENSCHIG00000026308RPA19862.023ENSPMGG00000011589rpa19962.355Periophthalmus_magnuspinnatus
ENSCHIG00000026308RPA19989.886ENSPEMG00000021061Rpa19989.886Peromyscus_maniculatus_bairdii
ENSCHIG00000026308RPA110082.010ENSPCIG00000019049RPA19982.010Phascolarctos_cinereus
ENSCHIG00000026308RPA19961.889ENSPFOG00000003987rpa19961.526Poecilia_formosa
ENSCHIG00000026308RPA19961.889ENSPLAG00000004984rpa19961.401Poecilia_latipinna
ENSCHIG00000026308RPA19454.213ENSPLAG00000008844-9754.167Poecilia_latipinna
ENSCHIG00000026308RPA19962.052ENSPMEG00000020602rpa19962.522Poecilia_mexicana
ENSCHIG00000026308RPA19454.487ENSPMEG00000003627-9754.589Poecilia_mexicana
ENSCHIG00000026308RPA19454.623ENSPREG00000010174rpa19655.938Poecilia_reticulata
ENSCHIG00000026308RPA19952.577ENSPREG00000010119RPA18263.781Poecilia_reticulata
ENSCHIG00000026308RPA110091.721ENSPCOG00000001799RPA110091.721Propithecus_coquereli
ENSCHIG00000026308RPA110092.695ENSPVAG00000002149RPA110092.695Pteropus_vampyrus
ENSCHIG00000026308RPA19963.339ENSPNYG00000016316rpa19964.125Pundamilia_nyererei
ENSCHIG00000026308RPA19957.053ENSPNYG00000024165RPA19956.113Pundamilia_nyererei
ENSCHIG00000026308RPA19955.574ENSPNAG00000008599rpa19656.947Pygocentrus_nattereri
ENSCHIG00000026308RPA19988.744ENSRNOG00000003123Rpa19988.744Rattus_norvegicus
ENSCHIG00000026308RPA110089.951ENSRBIG00000036587RPA110089.123Rhinopithecus_bieti
ENSCHIG00000026308RPA110084.603ENSRROG00000043278RPA110083.766Rhinopithecus_roxellana
ENSCHIG00000026308RPA19732.406YAR007CRFA19732.406Saccharomyces_cerevisiae
ENSCHIG00000026308RPA19886.258ENSSBOG00000030233RPA19986.258Saimiri_boliviensis_boliviensis
ENSCHIG00000026308RPA19983.306ENSSHAG00000007969RPA19883.633Sarcophilus_harrisii
ENSCHIG00000026308RPA19964.390ENSSFOG00015005362rpa19264.065Scleropages_formosus
ENSCHIG00000026308RPA19952.496ENSSMAG00000019746RPA19951.667Scophthalmus_maximus
ENSCHIG00000026308RPA18964.203ENSSDUG00000016358RPA18163.719Seriola_dumerili
ENSCHIG00000026308RPA19964.484ENSSDUG00000011949rpa19964.321Seriola_dumerili
ENSCHIG00000026308RPA19964.321ENSSLDG00000011806rpa19964.157Seriola_lalandi_dorsalis
ENSCHIG00000026308RPA18964.501ENSSLDG00000020784RPA18064.155Seriola_lalandi_dorsalis
ENSCHIG00000026308RPA19870.579ENSSARG00000007506RPA110069.917Sorex_araneus
ENSCHIG00000026308RPA19772.819ENSSPUG00000007223RPA19972.819Sphenodon_punctatus
ENSCHIG00000026308RPA19963.175ENSSPAG00000009903rpa19963.011Stegastes_partitus
ENSCHIG00000026308RPA19657.504ENSSPAG00000011165RPA19757.509Stegastes_partitus
ENSCHIG00000026308RPA19894.859ENSSSCG00000017822RPA110094.859Sus_scrofa
ENSCHIG00000026308RPA110074.230ENSTGUG00000005775RPA19974.230Taeniopygia_guttata
ENSCHIG00000026308RPA19954.876ENSTRUG00000000405RPA18160.086Takifugu_rubripes
ENSCHIG00000026308RPA19963.651ENSTRUG00000003616rpa19963.322Takifugu_rubripes
ENSCHIG00000026308RPA19964.274ENSTNIG00000016199rpa19964.111Tetraodon_nigroviridis
ENSCHIG00000026308RPA187100.000ENSTBEG00000002709RPA181100.000Tupaia_belangeri
ENSCHIG00000026308RPA19993.333ENSTTRG00000001169RPA19993.333Tursiops_truncatus
ENSCHIG00000026308RPA18992.308ENSUAMG00000015676RPA19991.908Ursus_americanus
ENSCHIG00000026308RPA110092.045ENSUMAG00000009328RPA110092.045Ursus_maritimus
ENSCHIG00000026308RPA110092.695ENSVPAG00000009443RPA110092.695Vicugna_pacos
ENSCHIG00000026308RPA110091.883ENSVVUG00000021715RPA110091.883Vulpes_vulpes
ENSCHIG00000026308RPA19975.286ENSXETG00000013538rpa19975.450Xenopus_tropicalis
ENSCHIG00000026308RPA19459.689ENSXCOG00000010068rpa19460.830Xiphophorus_couchianus
ENSCHIG00000026308RPA19556.102ENSXCOG00000009899-9955.973Xiphophorus_couchianus
ENSCHIG00000026308RPA19163.781ENSXMAG00000010333RPA17963.781Xiphophorus_maculatus
ENSCHIG00000026308RPA19960.586ENSXMAG00000004102rpa19961.780Xiphophorus_maculatus

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