EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • Orthologs
Description
Ensembl ID
ENSCHIG00000026308 (Gene tree)
Gene ID
102176822
Gene Symbol
RPA1
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A1
Gene Type
protein_coding
Species
Capra_hircus
Status
putative
Strand
Plus strand
Length
43423 bases
Position
chr19:22696660-22740082
Accession
102176822
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCHIP00000032279tRNA_anti-codonPF01336.252.7e-1211
ENSCHIP00000032277tRNA_anti-codonPF01336.252.9e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCHIT00000040154RPA1-2021854-ENSCHIP00000032279617 (aa)-UPI000D195E2B
ENSCHIT00000040152RPA1-2011851XM_018064402ENSCHIP00000032277616 (aa)XP_017919891UPI0006B13925
Gene Model
Click here to download ENSCHIG00000026308's gene model file
Pathways
Pathway IDPathway NameSource
chx03030DNA replicationKEGG
chx03420Nucleotide excision repairKEGG
chx03430Mismatch repairKEGG
chx03440Homologous recombinationKEGG
chx03460Fanconi anemia pathwayKEGG
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCHIG00000026308RPA19959.336ENSAPOG00000019409RPA18962.162Acanthochromis_polyacanthus
ENSCHIG00000026308RPA19962.255ENSAPOG00000011658rpa19962.255Acanthochromis_polyacanthus
ENSCHIG00000026308RPA19991.133ENSAMEG00000007706RPA19891.269Ailuropoda_melanoleuca
ENSCHIG00000026308RPA19658.065ENSACIG00000007277rpa19957.458Amphilophus_citrinellus
ENSCHIG00000026308RPA19557.336ENSACIG00000012881RPA19956.780Amphilophus_citrinellus
ENSCHIG00000026308RPA19954.475ENSAOCG00000009003RPA19953.763Amphiprion_ocellaris
ENSCHIG00000026308RPA19963.443ENSAOCG00000023376rpa19963.103Amphiprion_ocellaris
ENSCHIG00000026308RPA19952.941ENSAPEG00000019132RPA19952.402Amphiprion_percula
ENSCHIG00000026308RPA19963.279ENSAPEG00000008634rpa19963.040Amphiprion_percula
ENSCHIG00000026308RPA19563.979ENSATEG00000022024rpa19963.979Anabas_testudineus
ENSCHIG00000026308RPA19954.128ENSATEG00000006443RPA110051.807Anabas_testudineus
ENSCHIG00000026308RPA19865.436ENSAPLG00000012442RPA110065.583Anas_platyrhynchos
ENSCHIG00000026308RPA19964.136ENSACAG00000014490RPA19964.943Anolis_carolinensis
ENSCHIG00000026308RPA19890.547ENSANAG00000023456RPA110090.547Aotus_nancymaae
ENSCHIG00000026308RPA19364.174ENSACLG00000006640rpa19964.174Astatotilapia_calliptera
ENSCHIG00000026308RPA19957.367ENSACLG00000005223RPA19956.426Astatotilapia_calliptera
ENSCHIG00000026308RPA19961.951ENSAMXG00000008418rpa19961.851Astyanax_mexicanus
ENSCHIG00000026308RPA110098.539ENSBTAG00000009711RPA110098.539Bos_taurus
ENSCHIG00000026308RPA110090.097ENSCJAG00000001848RPA110090.097Callithrix_jacchus
ENSCHIG00000026308RPA110092.208ENSCAFG00000019249RPA110092.208Canis_familiaris
ENSCHIG00000026308RPA110092.208ENSCAFG00020009847RPA110092.208Canis_lupus_dingo
ENSCHIG00000026308RPA110090.924ENSTSYG00000003482-10090.924Carlito_syrichta
ENSCHIG00000026308RPA110086.851ENSCPOG00000000035RPA110086.851Cavia_porcellus
ENSCHIG00000026308RPA110079.254ENSCCAG00000010981RPA110079.092Cebus_capucinus
ENSCHIG00000026308RPA110084.253ENSCLAG00000015045-10084.253Chinchilla_lanigera
ENSCHIG00000026308RPA19988.455ENSCLAG00000005185-10088.455Chinchilla_lanigera
ENSCHIG00000026308RPA110078.282ENSCSAG00000013833RPA110078.282Chlorocebus_sabaeus
ENSCHIG00000026308RPA17192.938ENSCHOG00000009454-10092.938Choloepus_hoffmanni
ENSCHIG00000026308RPA19588.776ENSCHOG00000013540-10088.776Choloepus_hoffmanni
ENSCHIG00000026308RPA19977.561ENSCPBG00000020377RPA19977.504Chrysemys_picta_bellii
ENSCHIG00000026308RPA19941.408ENSCING00000023482-9841.396Ciona_intestinalis
ENSCHIG00000026308RPA19886.942ENSCANG00000030911RPA110086.942Colobus_angolensis_palliatus
ENSCHIG00000026308RPA19988.835ENSCGRG00001008197Rpa19988.350Cricetulus_griseus_chok1gshd
ENSCHIG00000026308RPA18187.574ENSCGRG00000000582Rpa19986.982Cricetulus_griseus_crigri
ENSCHIG00000026308RPA19951.597ENSCSEG00000012726RPA19851.701Cynoglossus_semilaevis
ENSCHIG00000026308RPA19961.047ENSCSEG00000013066rpa19961.047Cynoglossus_semilaevis
ENSCHIG00000026308RPA19962.927ENSCVAG00000019431rpa19963.573Cyprinodon_variegatus
ENSCHIG00000026308RPA19553.406ENSCVAG00000013446-9652.477Cyprinodon_variegatus
ENSCHIG00000026308RPA19963.961ENSDARG00000003938rpa19963.799Danio_rerio
ENSCHIG00000026308RPA19891.419ENSDNOG00000017218RPA19891.419Dasypus_novemcinctus
ENSCHIG00000026308RPA110089.123ENSDORG00000006199Rpa110089.123Dipodomys_ordii
ENSCHIG00000026308RPA19942.811FBgn0010173RpA-709842.811Drosophila_melanogaster
ENSCHIG00000026308RPA18388.542ENSETEG00000017608RPA18288.542Echinops_telfairi
ENSCHIG00000026308RPA19992.508ENSEASG00005009372RPA19992.508Equus_asinus_asinus
ENSCHIG00000026308RPA110092.857ENSECAG00000023886RPA110092.857Equus_caballus
ENSCHIG00000026308RPA16892.857ENSEEUG00000002186-6892.857Erinaceus_europaeus
ENSCHIG00000026308RPA19961.650ENSELUG00000021071rpa19961.489Esox_lucius
ENSCHIG00000026308RPA18855.147ENSELUG00000006136RPA19955.147Esox_lucius
ENSCHIG00000026308RPA110089.465ENSFCAG00000006306RPA19989.465Felis_catus
ENSCHIG00000026308RPA110074.798ENSFALG00000006575RPA19974.637Ficedula_albicollis
ENSCHIG00000026308RPA19988.436ENSFDAG00000007720RPA19988.436Fukomys_damarensis
ENSCHIG00000026308RPA19960.877ENSFHEG00000003580rpa19960.714Fundulus_heteroclitus
ENSCHIG00000026308RPA19958.525ENSGMOG00000010382rpa19958.525Gadus_morhua
ENSCHIG00000026308RPA110074.716ENSGALG00000003072RPA19974.716Gallus_gallus
ENSCHIG00000026308RPA19961.866ENSGAFG00000012916rpa19961.664Gambusia_affinis
ENSCHIG00000026308RPA19954.407ENSGAFG00000020953RPA19954.103Gambusia_affinis
ENSCHIG00000026308RPA19960.940ENSGACG00000010856rpa19960.813Gasterosteus_aculeatus
ENSCHIG00000026308RPA19977.561ENSGAGG00000013611RPA19976.873Gopherus_agassizii
ENSCHIG00000026308RPA110087.500ENSGGOG00000014186RPA110087.500Gorilla_gorilla
ENSCHIG00000026308RPA19653.667ENSHBUG00000009348RPA19953.667Haplochromis_burtoni
ENSCHIG00000026308RPA19963.175ENSHBUG00000017773rpa19962.643Haplochromis_burtoni
ENSCHIG00000026308RPA19988.599ENSHGLG00000008846RPA110088.599Heterocephalus_glaber_female
ENSCHIG00000026308RPA19988.599ENSHGLG00100017755-10088.599Heterocephalus_glaber_male
ENSCHIG00000026308RPA110083.117ENSHGLG00100000799-10083.117Heterocephalus_glaber_male
ENSCHIG00000026308RPA110075.325ENSHGLG00100002005-10075.325Heterocephalus_glaber_male
ENSCHIG00000026308RPA19960.806ENSHCOG00000001401rpa19961.264Hippocampus_comes
ENSCHIG00000026308RPA19944.065ENSHCOG00000000351RPA19844.065Hippocampus_comes
ENSCHIG00000026308RPA19961.874ENSIPUG00000004400rpa19961.851Ictalurus_punctatus
ENSCHIG00000026308RPA19984.878ENSSTOG00000022475RPA19984.878Ictidomys_tridecemlineatus
ENSCHIG00000026308RPA19589.116ENSJJAG00000000876Rpa19889.116Jaculus_jaculus
ENSCHIG00000026308RPA19961.951ENSKMAG00000005605rpa19961.951Kryptolebias_marmoratus
ENSCHIG00000026308RPA19954.397ENSKMAG00000000234RPA19954.397Kryptolebias_marmoratus
ENSCHIG00000026308RPA19958.958ENSLBEG00000002281RPA17961.451Labrus_bergylta
ENSCHIG00000026308RPA19962.193ENSLBEG00000021604rpa19961.866Labrus_bergylta
ENSCHIG00000026308RPA18165.800ENSLACG00000007210RPA19965.600Latimeria_chalumnae
ENSCHIG00000026308RPA19967.317ENSLOCG00000006397rpa19966.992Lepisosteus_oculatus
ENSCHIG00000026308RPA19989.677ENSLAFG00000015354RPA19989.677Loxodonta_africana
ENSCHIG00000026308RPA18290.514ENSMFAG00000036138-10090.514Macaca_fascicularis
ENSCHIG00000026308RPA19890.248ENSMMUG00000011604-10090.248Macaca_mulatta
ENSCHIG00000026308RPA110082.982ENSMMUG00000002442-10082.143Macaca_mulatta
ENSCHIG00000026308RPA18989.333ENSMNEG00000029837-10089.333Macaca_nemestrina
ENSCHIG00000026308RPA110086.851ENSMNEG00000031632-10086.851Macaca_nemestrina
ENSCHIG00000026308RPA19884.211ENSMLEG00000038768-10084.211Mandrillus_leucophaeus
ENSCHIG00000026308RPA19951.632ENSMAMG00000020097RPA19160.491Mastacembelus_armatus
ENSCHIG00000026308RPA19963.011ENSMAMG00000017993rpa19962.848Mastacembelus_armatus
ENSCHIG00000026308RPA19957.367ENSMZEG00005024731RPA19956.426Maylandia_zebra
ENSCHIG00000026308RPA19963.175ENSMZEG00005007551rpa19962.643Maylandia_zebra
ENSCHIG00000026308RPA19974.230ENSMGAG00000005315RPA19974.230Meleagris_gallopavo
ENSCHIG00000026308RPA19789.667ENSMAUG00000010474Rpa19989.667Mesocricetus_auratus
ENSCHIG00000026308RPA110091.234ENSMICG00000012867RPA110091.234Microcebus_murinus
ENSCHIG00000026308RPA19988.581ENSMOCG00000013019Rpa19988.581Microtus_ochrogaster
ENSCHIG00000026308RPA19961.501ENSMMOG00000014292rpa19962.331Mola_mola
ENSCHIG00000026308RPA19755.927ENSMMOG00000010868RPA19759.471Mola_mola
ENSCHIG00000026308RPA19983.577ENSMODG00000010549RPA19983.577Monodelphis_domestica
ENSCHIG00000026308RPA19559.911ENSMALG00000001208RPA17959.735Monopterus_albus
ENSCHIG00000026308RPA19963.666ENSMALG00000011453rpa19962.848Monopterus_albus
ENSCHIG00000026308RPA19987.175MGP_CAROLIEiJ_G0016734Rpa19986.526Mus_caroli
ENSCHIG00000026308RPA19984.887ENSMUSG00000000751Rpa19983.762Mus_musculus
ENSCHIG00000026308RPA19988.045MGP_PahariEiJ_G0017871Rpa19987.237Mus_pahari
ENSCHIG00000026308RPA19984.912MGP_SPRETEiJ_G0017577Rpa19983.628Mus_spretus
ENSCHIG00000026308RPA110091.721ENSMPUG00000013119RPA110091.721Mustela_putorius_furo
ENSCHIG00000026308RPA110088.567ENSMLUG00000006113RPA110088.567Myotis_lucifugus
ENSCHIG00000026308RPA19985.413ENSNGAG00000004522Rpa19488.625Nannospalax_galili
ENSCHIG00000026308RPA19854.876ENSNBRG00000009672RPA19754.380Neolamprologus_brichardi
ENSCHIG00000026308RPA19463.966ENSNBRG00000020595rpa19963.966Neolamprologus_brichardi
ENSCHIG00000026308RPA110089.286ENSNLEG00000017149RPA110089.286Nomascus_leucogenys
ENSCHIG00000026308RPA19873.223ENSMEUG00000006714RPA19972.893Notamacropus_eugenii
ENSCHIG00000026308RPA110083.200ENSODEG00000009038RPA110083.200Octodon_degus
ENSCHIG00000026308RPA19963.371ENSONIG00000013135rpa19963.005Oreochromis_niloticus
ENSCHIG00000026308RPA19883.582ENSOANG00000010880RPA19983.748Ornithorhynchus_anatinus
ENSCHIG00000026308RPA110086.997ENSOCUG00000001504RPA110086.997Oryctolagus_cuniculus
ENSCHIG00000026308RPA19953.599ENSORLG00000003368RPA19953.588Oryzias_latipes
ENSCHIG00000026308RPA19962.951ENSORLG00000004856rpa19962.459Oryzias_latipes
ENSCHIG00000026308RPA19952.331ENSORLG00020015284RPA18860.042Oryzias_latipes_hni
ENSCHIG00000026308RPA19963.115ENSORLG00020008980rpa19962.623Oryzias_latipes_hni
ENSCHIG00000026308RPA19963.115ENSORLG00015013982rpa19962.623Oryzias_latipes_hsok
ENSCHIG00000026308RPA19954.290ENSORLG00015020383RPA19953.894Oryzias_latipes_hsok
ENSCHIG00000026308RPA17160.000ENSORLG00015005867-9860.000Oryzias_latipes_hsok
ENSCHIG00000026308RPA19961.311ENSOMEG00000004704rpa19960.720Oryzias_melastigma
ENSCHIG00000026308RPA19954.067ENSOMEG00000011040RPA110055.746Oryzias_melastigma
ENSCHIG00000026308RPA19488.070ENSOGAG00000029379-10088.070Otolemur_garnettii
ENSCHIG00000026308RPA110090.909ENSOGAG00000005581-10090.909Otolemur_garnettii
ENSCHIG00000026308RPA110099.838ENSOARG00000014479RPA110099.838Ovis_aries
ENSCHIG00000026308RPA110090.422ENSPPAG00000039680RPA110090.422Pan_paniscus
ENSCHIG00000026308RPA110089.141ENSPPRG00000011807RPA19989.141Panthera_pardus
ENSCHIG00000026308RPA110088.979ENSPTIG00000007898RPA19988.979Panthera_tigris_altaica
ENSCHIG00000026308RPA110090.422ENSPTRG00000008539RPA110090.422Pan_troglodytes
ENSCHIG00000026308RPA110090.097ENSPANG00000024592RPA110090.097Papio_anubis
ENSCHIG00000026308RPA19461.063ENSPKIG00000008053rpa19461.407Paramormyrops_kingsleyae
ENSCHIG00000026308RPA19776.628ENSPSIG00000015617RPA19976.461Pelodiscus_sinensis
ENSCHIG00000026308RPA19953.462ENSPMGG00000000543RPA19955.575Periophthalmus_magnuspinnatus
ENSCHIG00000026308RPA19862.023ENSPMGG00000011589rpa19962.355Periophthalmus_magnuspinnatus
ENSCHIG00000026308RPA19989.886ENSPEMG00000021061Rpa19989.886Peromyscus_maniculatus_bairdii
ENSCHIG00000026308RPA110082.010ENSPCIG00000019049RPA19982.010Phascolarctos_cinereus
ENSCHIG00000026308RPA19961.889ENSPFOG00000003987rpa19961.526Poecilia_formosa
ENSCHIG00000026308RPA19961.889ENSPLAG00000004984rpa19961.401Poecilia_latipinna
ENSCHIG00000026308RPA19454.213ENSPLAG00000008844-9754.167Poecilia_latipinna
ENSCHIG00000026308RPA19962.052ENSPMEG00000020602rpa19962.522Poecilia_mexicana
ENSCHIG00000026308RPA19454.487ENSPMEG00000003627-9754.589Poecilia_mexicana
ENSCHIG00000026308RPA19454.623ENSPREG00000010174rpa19655.938Poecilia_reticulata
ENSCHIG00000026308RPA19952.577ENSPREG00000010119RPA18263.781Poecilia_reticulata
ENSCHIG00000026308RPA110091.721ENSPCOG00000001799RPA110091.721Propithecus_coquereli
ENSCHIG00000026308RPA110092.695ENSPVAG00000002149RPA110092.695Pteropus_vampyrus
ENSCHIG00000026308RPA19963.339ENSPNYG00000016316rpa19964.125Pundamilia_nyererei
ENSCHIG00000026308RPA19957.053ENSPNYG00000024165RPA19956.113Pundamilia_nyererei
ENSCHIG00000026308RPA19955.574ENSPNAG00000008599rpa19656.947Pygocentrus_nattereri
ENSCHIG00000026308RPA19988.744ENSRNOG00000003123Rpa19988.744Rattus_norvegicus
ENSCHIG00000026308RPA110089.951ENSRBIG00000036587RPA110089.123Rhinopithecus_bieti
ENSCHIG00000026308RPA110084.603ENSRROG00000043278RPA110083.766Rhinopithecus_roxellana
ENSCHIG00000026308RPA19732.406YAR007CRFA19732.406Saccharomyces_cerevisiae
ENSCHIG00000026308RPA19886.258ENSSBOG00000030233RPA19986.258Saimiri_boliviensis_boliviensis
ENSCHIG00000026308RPA19983.306ENSSHAG00000007969RPA19883.633Sarcophilus_harrisii
ENSCHIG00000026308RPA19964.390ENSSFOG00015005362rpa19264.065Scleropages_formosus
ENSCHIG00000026308RPA19952.496ENSSMAG00000019746RPA19951.667Scophthalmus_maximus
ENSCHIG00000026308RPA18964.203ENSSDUG00000016358RPA18163.719Seriola_dumerili
ENSCHIG00000026308RPA19964.484ENSSDUG00000011949rpa19964.321Seriola_dumerili
ENSCHIG00000026308RPA19964.321ENSSLDG00000011806rpa19964.157Seriola_lalandi_dorsalis
ENSCHIG00000026308RPA18964.501ENSSLDG00000020784RPA18064.155Seriola_lalandi_dorsalis
ENSCHIG00000026308RPA19870.579ENSSARG00000007506RPA110069.917Sorex_araneus
ENSCHIG00000026308RPA19772.819ENSSPUG00000007223RPA19972.819Sphenodon_punctatus
ENSCHIG00000026308RPA19963.175ENSSPAG00000009903rpa19963.011Stegastes_partitus
ENSCHIG00000026308RPA19657.504ENSSPAG00000011165RPA19757.509Stegastes_partitus
ENSCHIG00000026308RPA19894.859ENSSSCG00000017822RPA110094.859Sus_scrofa
ENSCHIG00000026308RPA110074.230ENSTGUG00000005775RPA19974.230Taeniopygia_guttata
ENSCHIG00000026308RPA19954.876ENSTRUG00000000405RPA18160.086Takifugu_rubripes
ENSCHIG00000026308RPA19963.651ENSTRUG00000003616rpa19963.322Takifugu_rubripes
ENSCHIG00000026308RPA19964.274ENSTNIG00000016199rpa19964.111Tetraodon_nigroviridis
ENSCHIG00000026308RPA187100.000ENSTBEG00000002709RPA181100.000Tupaia_belangeri
ENSCHIG00000026308RPA19993.333ENSTTRG00000001169RPA19993.333Tursiops_truncatus
ENSCHIG00000026308RPA18992.308ENSUAMG00000015676RPA19991.908Ursus_americanus
ENSCHIG00000026308RPA110092.045ENSUMAG00000009328RPA110092.045Ursus_maritimus
ENSCHIG00000026308RPA110092.695ENSVPAG00000009443RPA110092.695Vicugna_pacos
ENSCHIG00000026308RPA110091.883ENSVVUG00000021715RPA110091.883Vulpes_vulpes
ENSCHIG00000026308RPA19975.286ENSXETG00000013538rpa19975.450Xenopus_tropicalis
ENSCHIG00000026308RPA19459.689ENSXCOG00000010068rpa19460.830Xiphophorus_couchianus
ENSCHIG00000026308RPA19556.102ENSXCOG00000009899-9955.973Xiphophorus_couchianus
ENSCHIG00000026308RPA19163.781ENSXMAG00000010333RPA17963.781Xiphophorus_maculatus
ENSCHIG00000026308RPA19960.586ENSXMAG00000004102rpa19961.780Xiphophorus_maculatus

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