EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHIG00000026580 (Gene tree)
Gene ID: 102184324
Gene Symbol: -
Alias: -
Full Name: DNA dC->dU-editing enzyme APOBEC-3C
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 17550 bases
Position: chr5:109483555-109501104
Accession: 102184324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000032712	APOBEC_N	PF08210.11	3.5e-89	1	2
ENSCHIP00000032712	APOBEC_N	PF08210.11	3.5e-89	2	2
ENSCHIP00000032715	APOBEC_N	PF08210.11	3.5e-89	1	2
ENSCHIP00000032715	APOBEC_N	PF08210.11	3.5e-89	2	2
ENSCHIP00000032721	APOBEC_N	PF08210.11	8.6e-42	1	1
ENSCHIP00000032712	APOBEC_C	PF05240.14	4.2e-63	1	2
ENSCHIP00000032712	APOBEC_C	PF05240.14	4.2e-63	2	2
ENSCHIP00000032715	APOBEC_C	PF05240.14	4.2e-63	1	2
ENSCHIP00000032715	APOBEC_C	PF05240.14	4.2e-63	2	2
ENSCHIP00000032721	APOBEC_C	PF05240.14	3.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000040597	-	4217	-	ENSCHIP00000032721	208 (aa)	-	UPI000D18E8B0
ENSCHIT00000040588	-	4883	XM_013964351	ENSCHIP00000032712	374 (aa)	XP_013819805	UPI0006B1185F
ENSCHIT00000040591	-	4169	XM_013964350	ENSCHIP00000032715	374 (aa)	XP_013819804	UPI0006B1185F

Gene Model

Click here to download ENSCHIG00000026580's gene model file

Pathways

Pathway ID	Pathway Name	Source
chx05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000026580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHIG00000026580	-	93	41.143	ENSCHIG00000012409	AICDA	89	41.143
ENSCHIG00000026580	-	97	40.426	ENSCHIG00000012694	-	93	40.415
ENSCHIG00000026580	-	61	37.624	ENSCHIG00000011898	APOBEC1	56	37.624

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000026580	-	95	50.000	ENSG00000100298	APOBEC3H	99	50.000	Homo_sapiens
ENSCHIG00000026580	-	100	46.556	ENSAMEG00000010818	-	95	46.556	Ailuropoda_melanoleuca
ENSCHIG00000026580	-	95	48.691	ENSANAG00000025410	APOBEC3H	93	48.691	Aotus_nancymaae
ENSCHIG00000026580	-	98	89.216	ENSBTAG00000007755	APOBEC3H	99	89.216	Bos_taurus
ENSCHIG00000026580	-	91	50.556	ENSCJAG00000012524	APOBEC3H	90	50.556	Callithrix_jacchus
ENSCHIG00000026580	-	96	58.192	ENSCAFG00000001361	APOBEC3Z3	95	58.192	Canis_familiaris
ENSCHIG00000026580	-	96	56.906	ENSCAFG00020002584	-	94	56.906	Canis_lupus_dingo
ENSCHIG00000026580	-	90	53.448	ENSTSYG00000032894	-	100	53.448	Carlito_syrichta
ENSCHIG00000026580	-	92	51.667	ENSCPOG00000009257	-	88	51.667	Cavia_porcellus
ENSCHIG00000026580	-	92	49.727	ENSCCAG00000008525	APOBEC3H	90	49.727	Cebus_capucinus
ENSCHIG00000026580	-	95	50.556	ENSCATG00000030302	APOBEC3H	99	50.556	Cercocebus_atys
ENSCHIG00000026580	-	95	53.333	ENSCLAG00000016615	-	88	53.333	Chinchilla_lanigera
ENSCHIG00000026580	-	98	49.730	ENSCSAG00000006371	APOBEC3H	94	49.730	Chlorocebus_sabaeus
ENSCHIG00000026580	-	99	46.667	ENSCGRG00001022976	Apobec3	85	50.802	Cricetulus_griseus_chok1gshd
ENSCHIG00000026580	-	99	46.667	ENSCGRG00000005621	Apobec3	85	50.802	Cricetulus_griseus_crigri
ENSCHIG00000026580	-	97	48.603	ENSDORG00000027271	-	100	51.020	Dipodomys_ordii
ENSCHIG00000026580	-	97	59.677	ENSECAG00000007726	APOBEC3H	86	56.784	Equus_caballus
ENSCHIG00000026580	-	94	62.295	ENSFCAG00000005251	APOBEC3Z3	100	61.798	Felis_catus
ENSCHIG00000026580	-	96	50.829	ENSSTOG00000007125	-	87	50.829	Ictidomys_tridecemlineatus
ENSCHIG00000026580	-	96	45.768	ENSJJAG00000016840	-	83	45.768	Jaculus_jaculus
ENSCHIG00000026580	-	96	48.603	ENSLAFG00000027404	-	97	51.111	Loxodonta_africana
ENSCHIG00000026580	-	98	51.892	ENSMFAG00000031827	APOBEC3H	94	52.222	Macaca_fascicularis
ENSCHIG00000026580	-	96	51.111	ENSMMUG00000001016	APOBEC3H	94	51.111	Macaca_mulatta
ENSCHIG00000026580	-	98	51.351	ENSMNEG00000039259	APOBEC3H	94	51.667	Macaca_nemestrina
ENSCHIG00000026580	-	98	50.270	ENSMLEG00000033417	APOBEC3H	94	50.270	Mandrillus_leucophaeus
ENSCHIG00000026580	-	98	45.867	ENSMAUG00000011683	Apobec3	87	50.543	Mesocricetus_auratus
ENSCHIG00000026580	-	96	44.595	ENSMOCG00000021576	Apobec3	90	44.595	Microtus_ochrogaster
ENSCHIG00000026580	-	97	46.049	MGP_CAROLIEiJ_G0020029	Apobec3	98	51.807	Mus_caroli
ENSCHIG00000026580	-	97	46.866	ENSMUSG00000009585	Apobec3	98	50.602	Mus_musculus
ENSCHIG00000026580	-	97	45.856	MGP_PahariEiJ_G0020031	-	89	45.856	Mus_pahari
ENSCHIG00000026580	-	97	46.594	MGP_SPRETEiJ_G0020927	Apobec3	98	51.807	Mus_spretus
ENSCHIG00000026580	-	97	52.893	ENSMPUG00000013239	-	97	52.893	Mustela_putorius_furo
ENSCHIG00000026580	-	97	50.542	ENSNGAG00000018998	Apobec3	99	50.542	Nannospalax_galili
ENSCHIG00000026580	-	98	49.730	ENSNLEG00000015218	-	94	49.730	Nomascus_leucogenys
ENSCHIG00000026580	-	97	43.989	ENSOCUG00000023913	-	96	42.308	Oryctolagus_cuniculus
ENSCHIG00000026580	-	99	96.216	ENSOARG00000016290	APOBEC3F	99	96.216	Ovis_aries
ENSCHIG00000026580	-	95	48.889	ENSPPAG00000036522	APOBEC3H	98	48.889	Pan_paniscus
ENSCHIG00000026580	-	96	63.128	ENSPPRG00000003941	-	95	63.128	Panthera_pardus
ENSCHIG00000026580	-	96	51.381	ENSPPRG00000003675	-	95	51.381	Panthera_pardus
ENSCHIG00000026580	-	96	63.128	ENSPTIG00000010283	-	95	63.128	Panthera_tigris_altaica
ENSCHIG00000026580	-	95	48.889	ENSPTRG00000014390	APOBEC3H	98	48.889	Pan_troglodytes
ENSCHIG00000026580	-	96	50.556	ENSPANG00000010774	APOBEC3H	94	50.556	Papio_anubis
ENSCHIG00000026580	-	96	43.411	ENSPEMG00000000456	Apobec3	88	43.411	Peromyscus_maniculatus_bairdii
ENSCHIG00000026580	-	96	48.333	ENSPPYG00000011834	-	94	48.333	Pongo_abelii
ENSCHIG00000026580	-	89	49.432	ENSPCAG00000015655	-	99	49.432	Procavia_capensis
ENSCHIG00000026580	-	66	52.419	ENSPVAG00000024161	-	94	52.419	Pteropus_vampyrus
ENSCHIG00000026580	-	68	50.382	ENSPVAG00000024267	-	99	50.382	Pteropus_vampyrus
ENSCHIG00000026580	-	91	58.523	ENSPVAG00000009462	-	99	58.523	Pteropus_vampyrus
ENSCHIG00000026580	-	98	45.430	ENSRNOG00000016852	Apobec3	91	49.444	Rattus_norvegicus
ENSCHIG00000026580	-	98	49.730	ENSRBIG00000029088	APOBEC3H	99	49.730	Rhinopithecus_bieti
ENSCHIG00000026580	-	98	50.270	ENSRROG00000024699	APOBEC3H	94	50.270	Rhinopithecus_roxellana
ENSCHIG00000026580	-	97	50.265	ENSSBOG00000030005	APOBEC3H	99	50.725	Saimiri_boliviensis_boliviensis
ENSCHIG00000026580	-	98	69.730	ENSSSCG00000000091	APOBEC3B	91	70.000	Sus_scrofa
ENSCHIG00000026580	-	87	55.294	ENSTBEG00000001532	-	99	55.294	Tupaia_belangeri
ENSCHIG00000026580	-	91	77.528	ENSTTRG00000001266	-	100	77.528	Tursiops_truncatus
ENSCHIG00000026580	-	95	55.914	ENSUAMG00000004427	-	85	56.150	Ursus_americanus
ENSCHIG00000026580	-	96	57.865	ENSUMAG00000014435	-	95	57.627	Ursus_maritimus
ENSCHIG00000026580	-	67	64.567	ENSVPAG00000011108	-	99	64.567	Vicugna_pacos
ENSCHIG00000026580	-	97	74.419	ENSVVUG00000014624	-	69	74.419	Vulpes_vulpes