EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHIG00000027000 (Gene tree)
Gene ID: 102170933
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Capra_hircus
Status: putative
Strand: Plus strand
Length: 11940 bases
Position: chr25:37857244-37869183
Accession: 102170933
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHIP00000033417	PPR	PF01535.20	7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHIT00000041296	-	2143	XM_018040196	ENSCHIP00000033417	706 (aa)	XP_017895685	UPI000D1964E4

Gene Model

Click here to download ENSCHIG00000027000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHIG00000027000's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHIG00000027000	-	99	76.989	ENSG00000106246	PTCD1	100	76.705	Homo_sapiens
ENSCHIG00000027000	-	99	76.989	ENSG00000248919	ATP5MF-PTCD1	93	76.705	Homo_sapiens
ENSCHIG00000027000	-	79	48.654	ENSAPOG00000010679	ptcd1	85	48.474	Acanthochromis_polyacanthus
ENSCHIG00000027000	-	99	81.161	ENSAMEG00000006224	-	93	81.161	Ailuropoda_melanoleuca
ENSCHIG00000027000	-	87	50.000	ENSACIG00000017861	ptcd1	87	50.000	Amphilophus_citrinellus
ENSCHIG00000027000	-	87	48.867	ENSAOCG00000020741	-	87	48.089	Amphiprion_ocellaris
ENSCHIG00000027000	-	83	48.136	ENSAOCG00000022617	ptcd1	86	47.966	Amphiprion_ocellaris
ENSCHIG00000027000	-	95	46.667	ENSAPEG00000022632	ptcd1	93	46.519	Amphiprion_percula
ENSCHIG00000027000	-	84	51.333	ENSATEG00000007016	ptcd1	86	50.000	Anabas_testudineus
ENSCHIG00000027000	-	84	60.774	ENSAPLG00000006862	-	93	60.399	Anas_platyrhynchos
ENSCHIG00000027000	-	99	55.494	ENSACAG00000012871	-	93	55.263	Anolis_carolinensis
ENSCHIG00000027000	-	97	76.744	ENSANAG00000035790	-	100	76.744	Aotus_nancymaae
ENSCHIG00000027000	-	87	48.480	ENSACLG00000002824	ptcd1	86	48.480	Astatotilapia_calliptera
ENSCHIG00000027000	-	87	49.145	ENSAMXG00000037292	ptcd1	88	49.142	Astyanax_mexicanus
ENSCHIG00000027000	-	99	93.883	ENSBTAG00000020440	-	87	93.883	Bos_taurus
ENSCHIG00000027000	-	99	77.273	ENSCJAG00000015815	-	100	77.273	Callithrix_jacchus
ENSCHIG00000027000	-	99	81.020	ENSCAFG00000015055	-	93	81.020	Canis_familiaris
ENSCHIG00000027000	-	99	81.020	ENSCAFG00020014480	-	93	81.020	Canis_lupus_dingo
ENSCHIG00000027000	-	99	79.433	ENSTSYG00000029495	-	100	79.433	Carlito_syrichta
ENSCHIG00000027000	-	93	75.380	ENSCAPG00000014660	-	100	75.380	Cavia_aperea
ENSCHIG00000027000	-	99	75.177	ENSCPOG00000001780	-	100	75.177	Cavia_porcellus
ENSCHIG00000027000	-	99	76.596	ENSCCAG00000034025	-	100	76.596	Cebus_capucinus
ENSCHIG00000027000	-	99	76.028	ENSCATG00000040859	-	100	76.312	Cercocebus_atys
ENSCHIG00000027000	-	97	77.457	ENSCLAG00000006354	-	100	76.738	Chinchilla_lanigera
ENSCHIG00000027000	-	91	75.814	ENSCSAG00000017794	-	95	76.124	Chlorocebus_sabaeus
ENSCHIG00000027000	-	87	59.317	ENSCPBG00000020866	-	86	59.472	Chrysemys_picta_bellii
ENSCHIG00000027000	-	82	30.756	ENSCING00000007717	-	91	31.123	Ciona_intestinalis
ENSCHIG00000027000	-	99	76.102	ENSCANG00000023441	-	100	76.387	Colobus_angolensis_palliatus
ENSCHIG00000027000	-	99	73.894	ENSCGRG00001023686	Ptcd1	99	73.466	Cricetulus_griseus_chok1gshd
ENSCHIG00000027000	-	98	73.759	ENSCGRG00000015031	Ptcd1	99	73.333	Cricetulus_griseus_crigri
ENSCHIG00000027000	-	93	45.482	ENSCSEG00000002378	ptcd1	89	45.783	Cynoglossus_semilaevis
ENSCHIG00000027000	-	84	47.883	ENSCVAG00000015826	ptcd1	83	47.720	Cyprinodon_variegatus
ENSCHIG00000027000	-	85	47.565	ENSCVAG00000003621	ptcd1	88	47.403	Cyprinodon_variegatus
ENSCHIG00000027000	-	87	51.204	ENSDARG00000076176	ptcd1	89	50.886	Danio_rerio
ENSCHIG00000027000	-	99	77.042	ENSDNOG00000009957	-	100	77.042	Dasypus_novemcinctus
ENSCHIG00000027000	-	97	74.311	ENSDORG00000000740	Ptcd1	99	74.311	Dipodomys_ordii
ENSCHIG00000027000	-	91	40.311	ENSEBUG00000014515	ptcd1	97	42.268	Eptatretus_burgeri
ENSCHIG00000027000	-	99	83.803	ENSEASG00005002480	-	100	83.803	Equus_asinus_asinus
ENSCHIG00000027000	-	99	83.803	ENSECAG00000016617	-	100	83.803	Equus_caballus
ENSCHIG00000027000	-	85	47.664	ENSELUG00000016517	ptcd1	85	47.819	Esox_lucius
ENSCHIG00000027000	-	99	81.408	ENSFCAG00000015069	-	100	81.408	Felis_catus
ENSCHIG00000027000	-	87	59.812	ENSFALG00000013803	-	94	57.416	Ficedula_albicollis
ENSCHIG00000027000	-	99	75.637	ENSFDAG00000006393	-	100	75.354	Fukomys_damarensis
ENSCHIG00000027000	-	80	46.048	ENSFHEG00000012491	ptcd1	96	46.048	Fundulus_heteroclitus
ENSCHIG00000027000	-	82	48.801	ENSGMOG00000007639	ptcd1	91	48.542	Gadus_morhua
ENSCHIG00000027000	-	86	59.904	ENSGALG00000004711	-	98	55.540	Gallus_gallus
ENSCHIG00000027000	-	89	46.729	ENSGAFG00000013175	ptcd1	89	46.106	Gambusia_affinis
ENSCHIG00000027000	-	85	50.912	ENSGACG00000016607	ptcd1	91	50.580	Gasterosteus_aculeatus
ENSCHIG00000027000	-	85	57.591	ENSGAGG00000021832	-	91	56.778	Gopherus_agassizii
ENSCHIG00000027000	-	99	76.956	ENSGGOG00000015123	-	99	76.671	Gorilla_gorilla
ENSCHIG00000027000	-	87	48.320	ENSHBUG00000018275	ptcd1	86	48.320	Haplochromis_burtoni
ENSCHIG00000027000	-	99	76.346	ENSHGLG00000017621	-	100	75.921	Heterocephalus_glaber_female
ENSCHIG00000027000	-	99	76.346	ENSHGLG00100007218	-	100	75.921	Heterocephalus_glaber_male
ENSCHIG00000027000	-	83	47.432	ENSHCOG00000010784	ptcd1	82	47.611	Hippocampus_comes
ENSCHIG00000027000	-	99	77.324	ENSSTOG00000001682	-	100	77.324	Ictidomys_tridecemlineatus
ENSCHIG00000027000	-	99	73.333	ENSJJAG00000000319	Ptcd1	100	73.050	Jaculus_jaculus
ENSCHIG00000027000	-	85	48.430	ENSKMAG00000008708	ptcd1	83	48.430	Kryptolebias_marmoratus
ENSCHIG00000027000	-	88	48.357	ENSLBEG00000008061	ptcd1	86	47.642	Labrus_bergylta
ENSCHIG00000027000	-	86	58.132	ENSLACG00000011172	ptcd1	86	58.937	Latimeria_chalumnae
ENSCHIG00000027000	-	95	52.489	ENSLOCG00000004833	ptcd1	99	53.344	Lepisosteus_oculatus
ENSCHIG00000027000	-	99	74.402	ENSLAFG00000002588	-	100	74.402	Loxodonta_africana
ENSCHIG00000027000	-	99	75.887	ENSMFAG00000041324	-	100	76.170	Macaca_fascicularis
ENSCHIG00000027000	-	99	75.745	ENSMMUG00000030408	-	100	76.028	Macaca_mulatta
ENSCHIG00000027000	-	99	75.887	ENSMNEG00000043786	-	100	76.170	Macaca_nemestrina
ENSCHIG00000027000	-	99	48.942	ENSMLEG00000031179	-	100	58.723	Mandrillus_leucophaeus
ENSCHIG00000027000	-	95	47.788	ENSMAMG00000007623	ptcd1	91	47.640	Mastacembelus_armatus
ENSCHIG00000027000	-	87	48.480	ENSMZEG00005012722	ptcd1	86	48.480	Maylandia_zebra
ENSCHIG00000027000	-	93	59.070	ENSMGAG00000004211	-	88	59.070	Meleagris_gallopavo
ENSCHIG00000027000	-	99	78.156	ENSMICG00000017428	-	100	78.156	Microcebus_murinus
ENSCHIG00000027000	-	90	45.370	ENSMMOG00000020243	ptcd1	93	46.764	Mola_mola
ENSCHIG00000027000	-	95	62.338	ENSMODG00000001350	-	93	62.193	Monodelphis_domestica
ENSCHIG00000027000	-	93	46.796	ENSMALG00000018442	ptcd1	88	46.796	Monopterus_albus
ENSCHIG00000027000	-	98	75.252	MGP_CAROLIEiJ_G0028011	Ptcd1	99	75.396	Mus_caroli
ENSCHIG00000027000	-	98	75.108	ENSMUSG00000029624	Ptcd1	99	75.252	Mus_musculus
ENSCHIG00000027000	-	98	74.820	MGP_PahariEiJ_G0024580	Ptcd1	99	74.676	Mus_pahari
ENSCHIG00000027000	-	98	75.396	MGP_SPRETEiJ_G0029012	Ptcd1	99	75.683	Mus_spretus
ENSCHIG00000027000	-	99	79.859	ENSMPUG00000016518	-	100	80.704	Mustela_putorius_furo
ENSCHIG00000027000	-	99	82.394	ENSMLUG00000010994	-	94	82.535	Myotis_lucifugus
ENSCHIG00000027000	-	92	46.847	ENSNBRG00000010079	ptcd1	91	47.939	Neolamprologus_brichardi
ENSCHIG00000027000	-	99	79.636	ENSNLEG00000011060	-	100	79.636	Nomascus_leucogenys
ENSCHIG00000027000	-	96	61.891	ENSMEUG00000006930	-	99	61.748	Notamacropus_eugenii
ENSCHIG00000027000	-	89	77.030	ENSOPRG00000013647	-	90	77.030	Ochotona_princeps
ENSCHIG00000027000	-	86	48.455	ENSONIG00000003168	ptcd1	99	48.455	Oreochromis_niloticus
ENSCHIG00000027000	-	80	58.722	ENSOANG00000007728	-	74	58.377	Ornithorhynchus_anatinus
ENSCHIG00000027000	-	99	75.637	ENSOCUG00000010584	-	98	75.496	Oryctolagus_cuniculus
ENSCHIG00000027000	-	88	48.397	ENSORLG00000009275	ptcd1	88	48.237	Oryzias_latipes
ENSCHIG00000027000	-	88	47.596	ENSORLG00020000988	ptcd1	88	47.276	Oryzias_latipes_hni
ENSCHIG00000027000	-	88	47.191	ENSORLG00015010557	ptcd1	88	47.030	Oryzias_latipes_hsok
ENSCHIG00000027000	-	85	48.525	ENSOMEG00000020627	ptcd1	87	48.276	Oryzias_melastigma
ENSCHIG00000027000	-	98	77.253	ENSOGAG00000010877	-	100	77.253	Otolemur_garnettii
ENSCHIG00000027000	-	99	92.439	ENSOARG00000018676	-	100	92.439	Ovis_aries
ENSCHIG00000027000	-	99	76.705	ENSPPAG00000036024	-	100	76.562	Pan_paniscus
ENSCHIG00000027000	-	99	81.960	ENSPPRG00000003478	-	100	81.960	Panthera_pardus
ENSCHIG00000027000	-	99	76.562	ENSPTRG00000019452	-	100	76.420	Pan_troglodytes
ENSCHIG00000027000	-	99	76.170	ENSPANG00000016730	-	100	76.454	Papio_anubis
ENSCHIG00000027000	-	92	51.442	ENSPKIG00000014215	ptcd1	94	51.589	Paramormyrops_kingsleyae
ENSCHIG00000027000	-	84	59.129	ENSPSIG00000011184	-	100	59.129	Pelodiscus_sinensis
ENSCHIG00000027000	-	72	42.912	ENSPMAG00000009667	ptcd1	100	42.912	Petromyzon_marinus
ENSCHIG00000027000	-	99	58.863	ENSPCIG00000024778	-	99	58.863	Phascolarctos_cinereus
ENSCHIG00000027000	-	93	45.710	ENSPFOG00000004458	ptcd1	92	46.302	Poecilia_formosa
ENSCHIG00000027000	-	89	47.161	ENSPLAG00000011051	ptcd1	89	47.476	Poecilia_latipinna
ENSCHIG00000027000	-	93	45.562	ENSPMEG00000020547	ptcd1	92	45.858	Poecilia_mexicana
ENSCHIG00000027000	-	89	47.468	ENSPREG00000000059	ptcd1	89	47.227	Poecilia_reticulata
ENSCHIG00000027000	-	94	78.130	ENSPPYG00000017377	-	100	77.828	Pongo_abelii
ENSCHIG00000027000	-	80	80.851	ENSPCAG00000001852	-	89	80.851	Procavia_capensis
ENSCHIG00000027000	-	99	79.291	ENSPCOG00000018596	-	100	79.291	Propithecus_coquereli
ENSCHIG00000027000	-	67	86.000	ENSPVAG00000007529	-	73	86.000	Pteropus_vampyrus
ENSCHIG00000027000	-	87	48.000	ENSPNYG00000019993	ptcd1	86	48.000	Pundamilia_nyererei
ENSCHIG00000027000	-	96	50.072	ENSPNAG00000014931	ptcd1	97	50.505	Pygocentrus_nattereri
ENSCHIG00000027000	-	98	73.957	ENSRNOG00000000987	Ptcd1	99	73.813	Rattus_norvegicus
ENSCHIG00000027000	-	99	76.387	ENSRBIG00000043393	-	100	76.671	Rhinopithecus_bieti
ENSCHIG00000027000	-	99	76.245	ENSRROG00000036420	-	100	76.529	Rhinopithecus_roxellana
ENSCHIG00000027000	-	99	77.131	ENSSBOG00000024114	-	100	77.131	Saimiri_boliviensis_boliviensis
ENSCHIG00000027000	-	97	57.221	ENSSHAG00000011376	-	98	61.103	Sarcophilus_harrisii
ENSCHIG00000027000	-	89	52.381	ENSSFOG00015007909	ptcd1	86	53.005	Scleropages_formosus
ENSCHIG00000027000	-	86	47.115	ENSSMAG00000000218	ptcd1	95	47.106	Scophthalmus_maximus
ENSCHIG00000027000	-	96	46.055	ENSSDUG00000015671	ptcd1	95	45.977	Seriola_dumerili
ENSCHIG00000027000	-	95	45.573	ENSSLDG00000014261	ptcd1	93	45.573	Seriola_lalandi_dorsalis
ENSCHIG00000027000	-	91	55.489	ENSSPUG00000003540	-	89	55.338	Sphenodon_punctatus
ENSCHIG00000027000	-	91	48.607	ENSSPAG00000011049	ptcd1	87	48.607	Stegastes_partitus
ENSCHIG00000027000	-	92	83.564	ENSSSCG00000007622	-	99	83.208	Sus_scrofa
ENSCHIG00000027000	-	87	60.488	ENSTGUG00000007563	-	99	60.813	Taeniopygia_guttata
ENSCHIG00000027000	-	88	47.687	ENSTRUG00000013471	ptcd1	81	48.581	Takifugu_rubripes
ENSCHIG00000027000	-	90	46.635	ENSTNIG00000008271	ptcd1	90	46.635	Tetraodon_nigroviridis
ENSCHIG00000027000	-	99	75.989	ENSTBEG00000011021	-	100	75.989	Tupaia_belangeri
ENSCHIG00000027000	-	99	83.830	ENSTTRG00000003006	-	100	83.830	Tursiops_truncatus
ENSCHIG00000027000	-	99	81.303	ENSUAMG00000008049	-	100	81.303	Ursus_americanus
ENSCHIG00000027000	-	99	80.654	ENSVVUG00000008836	-	100	80.654	Vulpes_vulpes
ENSCHIG00000027000	-	89	52.987	ENSXETG00000009891	ptcd1	91	52.241	Xenopus_tropicalis
ENSCHIG00000027000	-	90	46.285	ENSXMAG00000015540	ptcd1	90	46.130	Xiphophorus_maculatus