EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000000422 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Minus strand
Length: 92725 bases
Position: chrGeneScaffold_4715:4615-97339
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000000378	Upf2	PF04050.14	1.6e-33	1	1
ENSCHOP00000000378	MIF4G	PF02854.19	4.8e-66	1	2
ENSCHOP00000000378	MIF4G	PF02854.19	4.8e-66	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000000428	UPF2-201	3681	-	ENSCHOP00000000378	1227 (aa)	-	UPI0001F9E0DE

Gene Model

Click here to download ENSCHOG00000000422's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000000422's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000000422	UPF2	89	99.330	ENSG00000151461	UPF2	87	99.330	Homo_sapiens
ENSCHOG00000000422	UPF2	78	85.714	ENSAPOG00000015837	UPF2	79	82.243	Acanthochromis_polyacanthus
ENSCHOG00000000422	UPF2	89	98.884	ENSAMEG00000004586	UPF2	87	98.884	Ailuropoda_melanoleuca
ENSCHOG00000000422	UPF2	81	88.914	ENSACIG00000018078	UPF2	79	88.914	Amphilophus_citrinellus
ENSCHOG00000000422	UPF2	81	89.579	ENSAOCG00000016766	UPF2	79	89.579	Amphiprion_ocellaris
ENSCHOG00000000422	UPF2	81	89.579	ENSAPEG00000019084	UPF2	79	89.579	Amphiprion_percula
ENSCHOG00000000422	UPF2	81	88.717	ENSATEG00000021677	UPF2	78	88.717	Anabas_testudineus
ENSCHOG00000000422	UPF2	89	95.759	ENSAPLG00000010287	UPF2	80	95.759	Anas_platyrhynchos
ENSCHOG00000000422	UPF2	89	94.183	ENSACAG00000009259	UPF2	87	94.183	Anolis_carolinensis
ENSCHOG00000000422	UPF2	89	96.525	ENSANAG00000028451	UPF2	91	96.525	Aotus_nancymaae
ENSCHOG00000000422	UPF2	81	88.914	ENSACLG00000012696	UPF2	79	88.914	Astatotilapia_calliptera
ENSCHOG00000000422	UPF2	81	89.556	ENSAMXG00000013700	UPF2	78	89.556	Astyanax_mexicanus
ENSCHOG00000000422	UPF2	89	98.884	ENSBTAG00000000288	UPF2	87	98.884	Bos_taurus
ENSCHOG00000000422	UPF2	89	99.554	ENSCJAG00000020685	UPF2	87	99.554	Callithrix_jacchus
ENSCHOG00000000422	UPF2	89	98.661	ENSCAFG00000004839	UPF2	87	98.661	Canis_familiaris
ENSCHOG00000000422	UPF2	89	98.661	ENSCAFG00020005882	UPF2	89	98.438	Canis_lupus_dingo
ENSCHOG00000000422	UPF2	89	98.884	ENSCHIG00000020359	UPF2	87	98.884	Capra_hircus
ENSCHOG00000000422	UPF2	89	99.107	ENSTSYG00000000935	UPF2	87	99.107	Carlito_syrichta
ENSCHOG00000000422	UPF2	83	86.239	ENSCAPG00000016658	UPF2	83	86.196	Cavia_aperea
ENSCHOG00000000422	UPF2	89	94.981	ENSCPOG00000008809	UPF2	88	96.911	Cavia_porcellus
ENSCHOG00000000422	UPF2	89	95.367	ENSCCAG00000035991	UPF2	86	96.911	Cebus_capucinus
ENSCHOG00000000422	UPF2	89	99.554	ENSCATG00000032679	UPF2	87	99.554	Cercocebus_atys
ENSCHOG00000000422	UPF2	89	99.107	ENSCLAG00000011434	UPF2	87	99.107	Chinchilla_lanigera
ENSCHOG00000000422	UPF2	89	99.554	ENSCSAG00000013372	UPF2	87	99.554	Chlorocebus_sabaeus
ENSCHOG00000000422	UPF2	89	94.420	ENSCPBG00000027823	UPF2	87	94.981	Chrysemys_picta_bellii
ENSCHOG00000000422	UPF2	65	62.935	ENSCSAVG00000007772	-	72	64.194	Ciona_savignyi
ENSCHOG00000000422	UPF2	89	99.554	ENSCANG00000040396	UPF2	87	99.554	Colobus_angolensis_palliatus
ENSCHOG00000000422	UPF2	89	99.330	ENSCGRG00001019347	Upf2	87	99.330	Cricetulus_griseus_chok1gshd
ENSCHOG00000000422	UPF2	89	99.330	ENSCGRG00000017993	Upf2	87	99.330	Cricetulus_griseus_crigri
ENSCHOG00000000422	UPF2	73	91.206	ENSCSEG00000003520	UPF2	76	91.349	Cynoglossus_semilaevis
ENSCHOG00000000422	UPF2	84	89.333	ENSCVAG00000006167	UPF2	77	92.541	Cyprinodon_variegatus
ENSCHOG00000000422	UPF2	89	99.554	ENSDNOG00000018160	UPF2	87	99.554	Dasypus_novemcinctus
ENSCHOG00000000422	UPF2	89	98.661	ENSDORG00000002478	Upf2	87	98.661	Dipodomys_ordii
ENSCHOG00000000422	UPF2	72	47.781	FBgn0029992	Upf2	64	47.781	Drosophila_melanogaster
ENSCHOG00000000422	UPF2	62	100.000	ENSETEG00000011583	-	53	100.000	Echinops_telfairi
ENSCHOG00000000422	UPF2	58	76.325	ENSEBUG00000012448	-	72	85.470	Eptatretus_burgeri
ENSCHOG00000000422	UPF2	89	98.884	ENSEASG00005019274	UPF2	87	98.884	Equus_asinus_asinus
ENSCHOG00000000422	UPF2	89	98.884	ENSECAG00000017022	UPF2	87	98.884	Equus_caballus
ENSCHOG00000000422	UPF2	67	90.347	ENSEEUG00000007819	UPF2	60	94.595	Erinaceus_europaeus
ENSCHOG00000000422	UPF2	82	90.421	ENSELUG00000012014	UPF2	85	88.470	Esox_lucius
ENSCHOG00000000422	UPF2	89	98.884	ENSFCAG00000005785	UPF2	87	98.884	Felis_catus
ENSCHOG00000000422	UPF2	89	96.429	ENSFALG00000001889	UPF2	85	96.429	Ficedula_albicollis
ENSCHOG00000000422	UPF2	89	99.107	ENSFDAG00000014348	UPF2	87	99.107	Fukomys_damarensis
ENSCHOG00000000422	UPF2	84	89.333	ENSFHEG00000009826	UPF2	79	89.333	Fundulus_heteroclitus
ENSCHOG00000000422	UPF2	76	89.930	ENSGMOG00000005557	UPF2	77	90.141	Gadus_morhua
ENSCHOG00000000422	UPF2	89	96.214	ENSGALG00000033772	UPF2	87	96.214	Gallus_gallus
ENSCHOG00000000422	UPF2	79	92.112	ENSGAFG00000020867	UPF2	79	88.222	Gambusia_affinis
ENSCHOG00000000422	UPF2	78	90.632	ENSGACG00000001080	UPF2	77	90.845	Gasterosteus_aculeatus
ENSCHOG00000000422	UPF2	89	93.527	ENSGAGG00000002700	UPF2	87	94.208	Gopherus_agassizii
ENSCHOG00000000422	UPF2	89	99.330	ENSGGOG00000001479	UPF2	87	99.330	Gorilla_gorilla
ENSCHOG00000000422	UPF2	81	88.914	ENSHBUG00000004249	UPF2	79	88.914	Haplochromis_burtoni
ENSCHOG00000000422	UPF2	89	89.189	ENSHGLG00000003822	-	86	89.575	Heterocephalus_glaber_female
ENSCHOG00000000422	UPF2	89	99.107	ENSHGLG00000015176	-	87	99.107	Heterocephalus_glaber_female
ENSCHOG00000000422	UPF2	89	99.107	ENSHGLG00100010036	UPF2	87	99.107	Heterocephalus_glaber_male
ENSCHOG00000000422	UPF2	81	87.361	ENSHCOG00000004025	UPF2	78	88.692	Hippocampus_comes
ENSCHOG00000000422	UPF2	81	88.444	ENSIPUG00000015524	UPF2	78	89.333	Ictalurus_punctatus
ENSCHOG00000000422	UPF2	89	99.105	ENSSTOG00000013075	UPF2	87	99.105	Ictidomys_tridecemlineatus
ENSCHOG00000000422	UPF2	89	98.214	ENSJJAG00000004913	Upf2	87	98.214	Jaculus_jaculus
ENSCHOG00000000422	UPF2	81	88.692	ENSKMAG00000001071	UPF2	79	88.692	Kryptolebias_marmoratus
ENSCHOG00000000422	UPF2	81	89.135	ENSLBEG00000016394	-	81	89.135	Labrus_bergylta
ENSCHOG00000000422	UPF2	62	87.583	ENSLBEG00000000728	-	73	87.583	Labrus_bergylta
ENSCHOG00000000422	UPF2	78	85.930	ENSLACG00000015945	UPF2	76	86.802	Latimeria_chalumnae
ENSCHOG00000000422	UPF2	83	92.428	ENSLOCG00000015698	UPF2	82	92.428	Lepisosteus_oculatus
ENSCHOG00000000422	UPF2	89	99.554	ENSMFAG00000043865	UPF2	87	99.554	Macaca_fascicularis
ENSCHOG00000000422	UPF2	89	99.554	ENSMMUG00000008241	UPF2	87	99.554	Macaca_mulatta
ENSCHOG00000000422	UPF2	68	99.554	ENSMNEG00000008062	UPF2	83	99.554	Macaca_nemestrina
ENSCHOG00000000422	UPF2	89	99.554	ENSMLEG00000036120	UPF2	87	99.554	Mandrillus_leucophaeus
ENSCHOG00000000422	UPF2	81	87.805	ENSMAMG00000018276	UPF2	80	89.135	Mastacembelus_armatus
ENSCHOG00000000422	UPF2	81	88.914	ENSMZEG00005021595	UPF2	79	88.914	Maylandia_zebra
ENSCHOG00000000422	UPF2	89	96.214	ENSMGAG00000004573	UPF2	88	96.214	Meleagris_gallopavo
ENSCHOG00000000422	UPF2	89	95.367	ENSMAUG00000016512	Upf2	87	95.367	Mesocricetus_auratus
ENSCHOG00000000422	UPF2	85	99.330	ENSMICG00000001716	UPF2	87	99.330	Microcebus_murinus
ENSCHOG00000000422	UPF2	89	99.107	ENSMOCG00000008263	Upf2	87	99.107	Microtus_ochrogaster
ENSCHOG00000000422	UPF2	74	90.867	ENSMMOG00000006528	UPF2	81	88.000	Mola_mola
ENSCHOG00000000422	UPF2	89	96.652	ENSMODG00000016794	UPF2	87	96.652	Monodelphis_domestica
ENSCHOG00000000422	UPF2	81	87.805	ENSMALG00000002663	UPF2	80	89.135	Monopterus_albus
ENSCHOG00000000422	UPF2	89	99.107	MGP_CAROLIEiJ_G0023157	Upf2	89	99.107	Mus_caroli
ENSCHOG00000000422	UPF2	89	99.107	ENSMUSG00000043241	Upf2	87	99.507	Mus_musculus
ENSCHOG00000000422	UPF2	89	98.661	MGP_PahariEiJ_G0019217	Upf2	88	99.507	Mus_pahari
ENSCHOG00000000422	UPF2	89	99.107	MGP_SPRETEiJ_G0024075	Upf2	88	99.507	Mus_spretus
ENSCHOG00000000422	UPF2	89	98.884	ENSMPUG00000001064	UPF2	87	98.884	Mustela_putorius_furo
ENSCHOG00000000422	UPF2	89	97.778	ENSMLUG00000000228	UPF2	87	97.778	Myotis_lucifugus
ENSCHOG00000000422	UPF2	81	88.914	ENSNBRG00000013629	UPF2	79	88.914	Neolamprologus_brichardi
ENSCHOG00000000422	UPF2	89	99.330	ENSNLEG00000012058	UPF2	87	99.330	Nomascus_leucogenys
ENSCHOG00000000422	UPF2	64	100.000	ENSOPRG00000006801	-	63	100.000	Ochotona_princeps
ENSCHOG00000000422	UPF2	89	98.438	ENSODEG00000001290	UPF2	87	98.438	Octodon_degus
ENSCHOG00000000422	UPF2	81	88.692	ENSONIG00000017991	UPF2	79	88.692	Oreochromis_niloticus
ENSCHOG00000000422	UPF2	89	99.554	ENSOCUG00000006230	UPF2	87	99.554	Oryctolagus_cuniculus
ENSCHOG00000000422	UPF2	81	88.248	ENSORLG00000017189	UPF2	79	89.579	Oryzias_latipes
ENSCHOG00000000422	UPF2	81	88.248	ENSORLG00020005969	UPF2	79	89.579	Oryzias_latipes_hni
ENSCHOG00000000422	UPF2	81	88.248	ENSORLG00015005713	UPF2	79	89.579	Oryzias_latipes_hsok
ENSCHOG00000000422	UPF2	77	87.250	ENSOMEG00000023420	UPF2	76	89.000	Oryzias_melastigma
ENSCHOG00000000422	UPF2	89	99.777	ENSOGAG00000005796	UPF2	87	99.777	Otolemur_garnettii
ENSCHOG00000000422	UPF2	89	98.884	ENSOARG00000014587	UPF2	87	98.884	Ovis_aries
ENSCHOG00000000422	UPF2	89	99.330	ENSPPAG00000037953	UPF2	82	99.429	Pan_paniscus
ENSCHOG00000000422	UPF2	89	98.884	ENSPPRG00000000690	UPF2	87	98.884	Panthera_pardus
ENSCHOG00000000422	UPF2	89	98.884	ENSPTIG00000008867	UPF2	87	98.884	Panthera_tigris_altaica
ENSCHOG00000000422	UPF2	89	99.330	ENSPTRG00000002291	UPF2	87	99.330	Pan_troglodytes
ENSCHOG00000000422	UPF2	89	99.553	ENSPANG00000023399	UPF2	87	99.553	Papio_anubis
ENSCHOG00000000422	UPF2	80	88.444	ENSPKIG00000025502	UPF2	78	88.444	Paramormyrops_kingsleyae
ENSCHOG00000000422	UPF2	52	93.254	ENSPSIG00000015158	UPF2	83	93.254	Pelodiscus_sinensis
ENSCHOG00000000422	UPF2	78	90.686	ENSPMGG00000005259	UPF2	78	89.202	Periophthalmus_magnuspinnatus
ENSCHOG00000000422	UPF2	82	84.887	ENSPEMG00000015731	Upf2	85	84.887	Peromyscus_maniculatus_bairdii
ENSCHOG00000000422	UPF2	89	96.875	ENSPCIG00000006656	UPF2	87	96.875	Phascolarctos_cinereus
ENSCHOG00000000422	UPF2	83	89.333	ENSPFOG00000017118	UPF2	79	89.333	Poecilia_formosa
ENSCHOG00000000422	UPF2	83	89.333	ENSPLAG00000005094	UPF2	79	89.333	Poecilia_latipinna
ENSCHOG00000000422	UPF2	83	89.333	ENSPMEG00000017009	UPF2	79	89.333	Poecilia_mexicana
ENSCHOG00000000422	UPF2	81	89.509	ENSPREG00000021880	UPF2	79	89.509	Poecilia_reticulata
ENSCHOG00000000422	UPF2	58	99.554	ENSPPYG00000002089	-	84	99.554	Pongo_abelii
ENSCHOG00000000422	UPF2	85	95.455	ENSPCAG00000000684	UPF2	82	95.455	Procavia_capensis
ENSCHOG00000000422	UPF2	83	100.000	ENSPCOG00000021656	UPF2	87	98.884	Propithecus_coquereli
ENSCHOG00000000422	UPF2	89	94.208	ENSPVAG00000017286	UPF2	87	95.367	Pteropus_vampyrus
ENSCHOG00000000422	UPF2	81	82.040	ENSPNYG00000017096	UPF2	78	82.040	Pundamilia_nyererei
ENSCHOG00000000422	UPF2	82	91.589	ENSPNAG00000009357	UPF2	78	89.755	Pygocentrus_nattereri
ENSCHOG00000000422	UPF2	88	93.333	ENSRNOG00000023593	Upf2	97	100.000	Rattus_norvegicus
ENSCHOG00000000422	UPF2	89	99.554	ENSRBIG00000037780	UPF2	87	99.554	Rhinopithecus_bieti
ENSCHOG00000000422	UPF2	89	99.554	ENSRROG00000043547	UPF2	87	99.554	Rhinopithecus_roxellana
ENSCHOG00000000422	UPF2	89	99.330	ENSSBOG00000020012	UPF2	87	99.330	Saimiri_boliviensis_boliviensis
ENSCHOG00000000422	UPF2	81	89.135	ENSSFOG00015023788	upf2	79	89.135	Scleropages_formosus
ENSCHOG00000000422	UPF2	77	87.617	ENSSMAG00000007637	UPF2	78	85.463	Scophthalmus_maximus
ENSCHOG00000000422	UPF2	79	91.315	ENSSDUG00000017244	UPF2	80	89.579	Seriola_dumerili
ENSCHOG00000000422	UPF2	76	91.315	ENSSLDG00000016866	UPF2	80	89.579	Seriola_lalandi_dorsalis
ENSCHOG00000000422	UPF2	89	98.884	ENSSARG00000008615	UPF2	87	98.884	Sorex_araneus
ENSCHOG00000000422	UPF2	89	92.278	ENSSPUG00000014544	UPF2	86	93.050	Sphenodon_punctatus
ENSCHOG00000000422	UPF2	60	98.661	ENSSSCG00000011117	-	85	98.661	Sus_scrofa
ENSCHOG00000000422	UPF2	89	96.429	ENSTGUG00000002163	-	87	96.429	Taeniopygia_guttata
ENSCHOG00000000422	UPF2	80	91.101	ENSTRUG00000007519	UPF2	78	88.889	Takifugu_rubripes
ENSCHOG00000000422	UPF2	85	89.135	ENSTNIG00000004453	UPF2	79	89.135	Tetraodon_nigroviridis
ENSCHOG00000000422	UPF2	80	90.698	ENSTBEG00000012679	UPF2	78	93.023	Tupaia_belangeri
ENSCHOG00000000422	UPF2	89	98.884	ENSTTRG00000016388	UPF2	87	98.884	Tursiops_truncatus
ENSCHOG00000000422	UPF2	80	100.000	ENSUAMG00000023560	UPF2	84	98.884	Ursus_americanus
ENSCHOG00000000422	UPF2	89	98.884	ENSUMAG00000012953	UPF2	83	98.884	Ursus_maritimus
ENSCHOG00000000422	UPF2	71	96.774	ENSVPAG00000006763	UPF2	69	96.774	Vicugna_pacos
ENSCHOG00000000422	UPF2	89	98.661	ENSVVUG00000006166	UPF2	87	98.661	Vulpes_vulpes
ENSCHOG00000000422	UPF2	82	93.512	ENSXETG00000033103	UPF2	81	93.512	Xenopus_tropicalis
ENSCHOG00000000422	UPF2	83	88.989	ENSXCOG00000011604	UPF2	79	88.889	Xiphophorus_couchianus
ENSCHOG00000000422	UPF2	83	88.667	ENSXMAG00000017209	UPF2	79	88.667	Xiphophorus_maculatus