EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000002218 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Plus strand
Length: 142840 bases
Position: chrGeneScaffold_7512:15886-158725
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000001967	TUDOR	PF00567.24	3.6e-19	1	1
ENSCHOP00000001967	SNase	PF00565.17	1.1e-26	1	2
ENSCHOP00000001967	SNase	PF00565.17	1.1e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000002235	SND1-201	2334	-	ENSCHOP00000001967	778 (aa)	-	UPI0001F9E755

Gene Model

Click here to download ENSCHOG00000002218's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000002218's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000002218	SND1	86	88.235	ENSG00000197157	SND1	80	95.122	Homo_sapiens
ENSCHOG00000002218	SND1	86	79.208	ENSAPOG00000017599	snd1	77	79.208	Acanthochromis_polyacanthus
ENSCHOG00000002218	SND1	86	91.176	ENSAMEG00000004664	SND1	73	91.176	Ailuropoda_melanoleuca
ENSCHOG00000002218	SND1	86	78.218	ENSACIG00000003551	snd1	77	78.218	Amphilophus_citrinellus
ENSCHOG00000002218	SND1	86	77.228	ENSAOCG00000014166	snd1	77	77.228	Amphiprion_ocellaris
ENSCHOG00000002218	SND1	86	78.218	ENSAPEG00000007067	snd1	77	78.218	Amphiprion_percula
ENSCHOG00000002218	SND1	86	77.228	ENSATEG00000018475	snd1	71	77.228	Anabas_testudineus
ENSCHOG00000002218	SND1	80	98.000	ENSANAG00000034463	SND1	73	98.000	Aotus_nancymaae
ENSCHOG00000002218	SND1	86	76.471	ENSACLG00000022897	snd1	78	76.471	Astatotilapia_calliptera
ENSCHOG00000002218	SND1	86	73.267	ENSAMXG00000016318	snd1	79	73.267	Astyanax_mexicanus
ENSCHOG00000002218	SND1	86	91.176	ENSBTAG00000010692	SND1	78	91.176	Bos_taurus
ENSCHOG00000002218	SND1	86	39.216	WBGene00006626	tsn-1	77	39.216	Caenorhabditis_elegans
ENSCHOG00000002218	SND1	86	90.196	ENSCJAG00000017668	SND1	79	90.196	Callithrix_jacchus
ENSCHOG00000002218	SND1	86	91.176	ENSCAFG00000001700	SND1	77	91.176	Canis_familiaris
ENSCHOG00000002218	SND1	86	91.176	ENSCAFG00020021639	SND1	77	91.176	Canis_lupus_dingo
ENSCHOG00000002218	SND1	86	91.176	ENSCHIG00000023390	SND1	78	91.176	Capra_hircus
ENSCHOG00000002218	SND1	73	73.545	ENSTSYG00000004979	SND1	97	73.545	Carlito_syrichta
ENSCHOG00000002218	SND1	86	85.294	ENSCAPG00000010677	SND1	81	85.000	Cavia_aperea
ENSCHOG00000002218	SND1	86	85.294	ENSCPOG00000006251	SND1	77	85.294	Cavia_porcellus
ENSCHOG00000002218	SND1	80	98.000	ENSCCAG00000036847	SND1	73	98.000	Cebus_capucinus
ENSCHOG00000002218	SND1	86	90.196	ENSCATG00000035214	SND1	79	90.196	Cercocebus_atys
ENSCHOG00000002218	SND1	86	88.235	ENSCLAG00000011796	SND1	95	73.545	Chinchilla_lanigera
ENSCHOG00000002218	SND1	86	90.196	ENSCSAG00000010182	SND1	77	90.196	Chlorocebus_sabaeus
ENSCHOG00000002218	SND1	86	78.218	ENSCPBG00000018094	SND1	78	78.431	Chrysemys_picta_bellii
ENSCHOG00000002218	SND1	86	49.515	ENSCING00000000524	-	78	49.515	Ciona_intestinalis
ENSCHOG00000002218	SND1	86	46.602	ENSCSAVG00000008807	-	77	46.602	Ciona_savignyi
ENSCHOG00000002218	SND1	86	90.196	ENSCANG00000035119	SND1	77	90.196	Colobus_angolensis_palliatus
ENSCHOG00000002218	SND1	86	90.196	ENSCGRG00001022514	Snd1	79	90.196	Cricetulus_griseus_chok1gshd
ENSCHOG00000002218	SND1	86	90.196	ENSCGRG00000012277	Snd1	79	90.196	Cricetulus_griseus_crigri
ENSCHOG00000002218	SND1	85	77.000	ENSCSEG00000008661	snd1	80	77.228	Cynoglossus_semilaevis
ENSCHOG00000002218	SND1	86	75.248	ENSCVAG00000010316	snd1	79	75.248	Cyprinodon_variegatus
ENSCHOG00000002218	SND1	86	76.471	ENSDARG00000006766	snd1	85	71.399	Danio_rerio
ENSCHOG00000002218	SND1	86	91.176	ENSDNOG00000006795	SND1	80	91.176	Dasypus_novemcinctus
ENSCHOG00000002218	SND1	86	90.196	ENSDORG00000000336	Snd1	77	90.196	Dipodomys_ordii
ENSCHOG00000002218	SND1	86	44.660	FBgn0035121	Tudor-SN	77	44.660	Drosophila_melanogaster
ENSCHOG00000002218	SND1	75	89.764	ENSETEG00000000375	SND1	68	89.764	Echinops_telfairi
ENSCHOG00000002218	SND1	54	48.656	ENSEBUG00000014201	-	84	66.667	Eptatretus_burgeri
ENSCHOG00000002218	SND1	86	91.176	ENSEASG00005008513	SND1	78	91.176	Equus_asinus_asinus
ENSCHOG00000002218	SND1	86	91.176	ENSECAG00000011451	SND1	78	91.176	Equus_caballus
ENSCHOG00000002218	SND1	86	86.275	ENSEEUG00000014737	SND1	74	86.275	Erinaceus_europaeus
ENSCHOG00000002218	SND1	86	76.471	ENSELUG00000001805	snd1	75	76.471	Esox_lucius
ENSCHOG00000002218	SND1	86	90.196	ENSFCAG00000008289	SND1	80	90.196	Felis_catus
ENSCHOG00000002218	SND1	86	87.255	ENSFDAG00000015881	SND1	78	87.255	Fukomys_damarensis
ENSCHOG00000002218	SND1	85	77.000	ENSFHEG00000004093	snd1	80	77.228	Fundulus_heteroclitus
ENSCHOG00000002218	SND1	86	77.228	ENSGAFG00000008421	snd1	79	77.228	Gambusia_affinis
ENSCHOG00000002218	SND1	71	75.000	ENSGACG00000019793	snd1	67	75.000	Gasterosteus_aculeatus
ENSCHOG00000002218	SND1	86	89.216	ENSGGOG00000009614	SND1	79	89.216	Gorilla_gorilla
ENSCHOG00000002218	SND1	86	76.471	ENSHBUG00000019135	snd1	78	76.471	Haplochromis_burtoni
ENSCHOG00000002218	SND1	86	87.255	ENSHGLG00000003618	SND1	93	73.369	Heterocephalus_glaber_female
ENSCHOG00000002218	SND1	86	87.255	ENSHGLG00100012449	SND1	78	87.255	Heterocephalus_glaber_male
ENSCHOG00000002218	SND1	86	74.257	ENSHCOG00000005266	snd1	77	74.257	Hippocampus_comes
ENSCHOG00000002218	SND1	86	68.317	ENSIPUG00000013279	snd1	77	68.317	Ictalurus_punctatus
ENSCHOG00000002218	SND1	86	90.196	ENSSTOG00000002140	SND1	77	90.196	Ictidomys_tridecemlineatus
ENSCHOG00000002218	SND1	86	91.176	ENSJJAG00000009561	Snd1	78	91.176	Jaculus_jaculus
ENSCHOG00000002218	SND1	86	76.238	ENSKMAG00000016997	snd1	77	76.238	Kryptolebias_marmoratus
ENSCHOG00000002218	SND1	81	80.952	ENSLBEG00000013563	snd1	77	80.952	Labrus_bergylta
ENSCHOG00000002218	SND1	86	78.431	ENSLOCG00000015537	snd1	78	78.431	Lepisosteus_oculatus
ENSCHOG00000002218	SND1	86	89.216	ENSLAFG00000009696	SND1	78	89.216	Loxodonta_africana
ENSCHOG00000002218	SND1	86	90.196	ENSMFAG00000038114	SND1	79	90.196	Macaca_fascicularis
ENSCHOG00000002218	SND1	86	90.196	ENSMMUG00000015432	SND1	77	90.196	Macaca_mulatta
ENSCHOG00000002218	SND1	86	90.196	ENSMNEG00000039808	SND1	97	73.982	Macaca_nemestrina
ENSCHOG00000002218	SND1	86	90.196	ENSMLEG00000029040	SND1	97	73.982	Mandrillus_leucophaeus
ENSCHOG00000002218	SND1	86	74.510	ENSMAMG00000011739	snd1	78	74.510	Mastacembelus_armatus
ENSCHOG00000002218	SND1	86	76.471	ENSMZEG00005005681	snd1	79	76.471	Maylandia_zebra
ENSCHOG00000002218	SND1	86	90.196	ENSMICG00000000097	SND1	79	90.196	Microcebus_murinus
ENSCHOG00000002218	SND1	86	89.216	ENSMOCG00000005040	Snd1	78	89.216	Microtus_ochrogaster
ENSCHOG00000002218	SND1	86	73.529	ENSMMOG00000001795	snd1	78	73.529	Mola_mola
ENSCHOG00000002218	SND1	86	89.216	ENSMODG00000015182	SND1	78	89.216	Monodelphis_domestica
ENSCHOG00000002218	SND1	86	74.510	ENSMALG00000012071	snd1	79	74.510	Monopterus_albus
ENSCHOG00000002218	SND1	86	90.196	MGP_CAROLIEiJ_G0028159	Snd1	78	90.196	Mus_caroli
ENSCHOG00000002218	SND1	86	90.196	ENSMUSG00000001424	Snd1	78	90.196	Mus_musculus
ENSCHOG00000002218	SND1	86	90.196	MGP_PahariEiJ_G0021917	Snd1	96	73.369	Mus_pahari
ENSCHOG00000002218	SND1	86	90.196	MGP_SPRETEiJ_G0029159	Snd1	78	90.196	Mus_spretus
ENSCHOG00000002218	SND1	86	91.176	ENSMPUG00000006545	SND1	78	91.176	Mustela_putorius_furo
ENSCHOG00000002218	SND1	86	91.176	ENSMLUG00000017130	SND1	79	91.176	Myotis_lucifugus
ENSCHOG00000002218	SND1	86	90.196	ENSNGAG00000011186	Snd1	77	90.196	Nannospalax_galili
ENSCHOG00000002218	SND1	86	76.471	ENSNBRG00000006681	snd1	78	76.471	Neolamprologus_brichardi
ENSCHOG00000002218	SND1	86	89.216	ENSNLEG00000012263	SND1	80	89.216	Nomascus_leucogenys
ENSCHOG00000002218	SND1	86	85.294	ENSOPRG00000013405	SND1	74	85.294	Ochotona_princeps
ENSCHOG00000002218	SND1	86	88.235	ENSODEG00000011502	SND1	78	88.235	Octodon_degus
ENSCHOG00000002218	SND1	86	76.471	ENSONIG00000011481	snd1	76	76.471	Oreochromis_niloticus
ENSCHOG00000002218	SND1	86	84.314	ENSOANG00000000817	SND1	78	84.314	Ornithorhynchus_anatinus
ENSCHOG00000002218	SND1	86	86.275	ENSOCUG00000001620	SND1	77	86.275	Oryctolagus_cuniculus
ENSCHOG00000002218	SND1	86	75.248	ENSORLG00000015201	snd1	79	75.248	Oryzias_latipes
ENSCHOG00000002218	SND1	86	76.238	ENSORLG00020013991	snd1	79	76.238	Oryzias_latipes_hni
ENSCHOG00000002218	SND1	86	76.238	ENSORLG00015012436	snd1	77	76.238	Oryzias_latipes_hsok
ENSCHOG00000002218	SND1	86	78.218	ENSOMEG00000006406	snd1	77	78.218	Oryzias_melastigma
ENSCHOG00000002218	SND1	86	90.196	ENSOGAG00000013356	SND1	73	90.196	Otolemur_garnettii
ENSCHOG00000002218	SND1	86	90.196	ENSOARG00000002149	SND1	78	90.196	Ovis_aries
ENSCHOG00000002218	SND1	86	88.235	ENSPPAG00000042947	SND1	79	88.235	Pan_paniscus
ENSCHOG00000002218	SND1	86	90.196	ENSPPRG00000004494	SND1	77	90.196	Panthera_pardus
ENSCHOG00000002218	SND1	86	89.216	ENSPTIG00000014214	SND1	78	89.216	Panthera_tigris_altaica
ENSCHOG00000002218	SND1	86	88.235	ENSPTRG00000023911	SND1	79	88.235	Pan_troglodytes
ENSCHOG00000002218	SND1	86	90.196	ENSPANG00000011997	SND1	80	90.196	Papio_anubis
ENSCHOG00000002218	SND1	86	65.347	ENSPKIG00000023494	snd1	78	65.347	Paramormyrops_kingsleyae
ENSCHOG00000002218	SND1	84	75.490	ENSPMGG00000003629	snd1	83	75.490	Periophthalmus_magnuspinnatus
ENSCHOG00000002218	SND1	86	90.196	ENSPEMG00000010240	Snd1	78	90.196	Peromyscus_maniculatus_bairdii
ENSCHOG00000002218	SND1	86	59.123	ENSPMAG00000007915	-	80	59.123	Petromyzon_marinus
ENSCHOG00000002218	SND1	86	89.216	ENSPCIG00000011561	SND1	78	89.216	Phascolarctos_cinereus
ENSCHOG00000002218	SND1	85	77.000	ENSPFOG00000001557	snd1	77	77.228	Poecilia_formosa
ENSCHOG00000002218	SND1	85	77.000	ENSPLAG00000018459	snd1	75	77.228	Poecilia_latipinna
ENSCHOG00000002218	SND1	85	77.000	ENSPMEG00000006803	snd1	77	77.228	Poecilia_mexicana
ENSCHOG00000002218	SND1	86	74.257	ENSPREG00000002189	snd1	78	74.257	Poecilia_reticulata
ENSCHOG00000002218	SND1	86	89.216	ENSPPYG00000017972	SND1	84	89.216	Pongo_abelii
ENSCHOG00000002218	SND1	77	89.216	ENSPCAG00000011305	SND1	66	89.216	Procavia_capensis
ENSCHOG00000002218	SND1	86	90.196	ENSPCOG00000026791	SND1	80	90.196	Propithecus_coquereli
ENSCHOG00000002218	SND1	86	89.216	ENSPVAG00000013945	SND1	77	89.216	Pteropus_vampyrus
ENSCHOG00000002218	SND1	86	76.471	ENSPNYG00000000932	snd1	78	76.471	Pundamilia_nyererei
ENSCHOG00000002218	SND1	86	72.277	ENSPNAG00000001206	snd1	77	72.277	Pygocentrus_nattereri
ENSCHOG00000002218	SND1	86	87.255	ENSRNOG00000031173	Snd1	80	86.275	Rattus_norvegicus
ENSCHOG00000002218	SND1	62	79.296	ENSRBIG00000027782	-	84	79.079	Rhinopithecus_bieti
ENSCHOG00000002218	SND1	86	90.196	ENSRROG00000033020	SND1	77	90.196	Rhinopithecus_roxellana
ENSCHOG00000002218	SND1	80	98.000	ENSSBOG00000032461	SND1	73	98.000	Saimiri_boliviensis_boliviensis
ENSCHOG00000002218	SND1	86	86.275	ENSSHAG00000015359	SND1	80	86.275	Sarcophilus_harrisii
ENSCHOG00000002218	SND1	86	71.287	ENSSFOG00015001103	snd1	78	71.287	Scleropages_formosus
ENSCHOG00000002218	SND1	85	75.000	ENSSMAG00000001932	snd1	73	75.248	Scophthalmus_maximus
ENSCHOG00000002218	SND1	86	75.248	ENSSDUG00000002699	snd1	72	75.248	Seriola_dumerili
ENSCHOG00000002218	SND1	86	75.248	ENSSLDG00000001950	snd1	72	75.248	Seriola_lalandi_dorsalis
ENSCHOG00000002218	SND1	78	84.211	ENSSARG00000004877	SND1	76	84.211	Sorex_araneus
ENSCHOG00000002218	SND1	66	97.222	ENSSPUG00000017586	SND1	86	97.222	Sphenodon_punctatus
ENSCHOG00000002218	SND1	73	64.198	ENSSPAG00000021398	snd1	94	64.198	Stegastes_partitus
ENSCHOG00000002218	SND1	86	91.176	ENSSSCG00000016590	SND1	77	91.176	Sus_scrofa
ENSCHOG00000002218	SND1	86	73.267	ENSTRUG00000014067	snd1	77	73.267	Takifugu_rubripes
ENSCHOG00000002218	SND1	86	72.549	ENSTNIG00000011019	snd1	94	65.202	Tetraodon_nigroviridis
ENSCHOG00000002218	SND1	86	91.176	ENSTBEG00000003999	SND1	79	91.176	Tupaia_belangeri
ENSCHOG00000002218	SND1	86	89.216	ENSTTRG00000006059	SND1	78	89.216	Tursiops_truncatus
ENSCHOG00000002218	SND1	63	90.196	ENSUAMG00000005604	-	62	90.196	Ursus_americanus
ENSCHOG00000002218	SND1	86	90.196	ENSUMAG00000005960	SND1	77	90.196	Ursus_maritimus
ENSCHOG00000002218	SND1	75	98.000	ENSVPAG00000008302	SND1	62	98.000	Vicugna_pacos
ENSCHOG00000002218	SND1	86	91.176	ENSVVUG00000007226	SND1	77	91.176	Vulpes_vulpes
ENSCHOG00000002218	SND1	86	68.078	ENSXETG00000023043	snd1	80	68.078	Xenopus_tropicalis
ENSCHOG00000002218	SND1	83	64.312	ENSXCOG00000013629	snd1	81	64.312	Xiphophorus_couchianus
ENSCHOG00000002218	SND1	86	76.238	ENSXMAG00000011469	snd1	77	76.238	Xiphophorus_maculatus