EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000002936 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Minus strand
Length: 8145 bases
Position: chrscaffold_19321:6236-14380
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000002599	SMN	PF06003.12	3.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000002950	SMNDC1-201	579	-	ENSCHOP00000002599	193 (aa)	-	UPI0001F9E56B

Gene Model

Click here to download ENSCHOG00000002936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000002936's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000002936	SMNDC1	100	98.964	ENSG00000119953	SMNDC1	81	98.964	Homo_sapiens
ENSCHOG00000002936	SMNDC1	100	69.948	ENSAPOG00000021772	smndc1	81	69.948	Acanthochromis_polyacanthus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSAMEG00000005251	SMNDC1	81	99.482	Ailuropoda_melanoleuca
ENSCHOG00000002936	SMNDC1	100	70.984	ENSACIG00000004819	smndc1	81	70.984	Amphilophus_citrinellus
ENSCHOG00000002936	SMNDC1	100	69.948	ENSAOCG00000017869	smndc1	81	69.948	Amphiprion_ocellaris
ENSCHOG00000002936	SMNDC1	100	69.948	ENSAPEG00000007752	smndc1	81	69.948	Amphiprion_percula
ENSCHOG00000002936	SMNDC1	100	71.503	ENSATEG00000006830	smndc1	81	71.503	Anabas_testudineus
ENSCHOG00000002936	SMNDC1	79	94.771	ENSAPLG00000004322	SMNDC1	77	94.771	Anas_platyrhynchos
ENSCHOG00000002936	SMNDC1	100	93.264	ENSACAG00000005983	SMNDC1	81	93.264	Anolis_carolinensis
ENSCHOG00000002936	SMNDC1	100	99.482	ENSANAG00000032875	SMNDC1	81	99.482	Aotus_nancymaae
ENSCHOG00000002936	SMNDC1	100	72.021	ENSACLG00000016360	smndc1	88	72.021	Astatotilapia_calliptera
ENSCHOG00000002936	SMNDC1	100	71.503	ENSAMXG00000020310	smndc1	81	71.503	Astyanax_mexicanus
ENSCHOG00000002936	SMNDC1	100	98.964	ENSBTAG00000000551	SMNDC1	81	98.964	Bos_taurus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSCJAG00000018624	SMNDC1	81	99.482	Callithrix_jacchus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSCAFG00000010720	SMNDC1	81	99.482	Canis_familiaris
ENSCHOG00000002936	SMNDC1	100	99.482	ENSCAFG00020011913	SMNDC1	81	99.482	Canis_lupus_dingo
ENSCHOG00000002936	SMNDC1	100	98.964	ENSCHIG00000010604	SMNDC1	81	98.964	Capra_hircus
ENSCHOG00000002936	SMNDC1	100	98.964	ENSTSYG00000026454	SMNDC1	81	98.964	Carlito_syrichta
ENSCHOG00000002936	SMNDC1	100	98.446	ENSCAPG00000009132	SMNDC1	96	98.446	Cavia_aperea
ENSCHOG00000002936	SMNDC1	100	98.446	ENSCPOG00000031666	SMNDC1	81	98.446	Cavia_porcellus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSCCAG00000021793	SMNDC1	81	99.482	Cebus_capucinus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSCATG00000035910	SMNDC1	81	99.482	Cercocebus_atys
ENSCHOG00000002936	SMNDC1	100	97.927	ENSCLAG00000002838	SMNDC1	81	97.927	Chinchilla_lanigera
ENSCHOG00000002936	SMNDC1	100	99.482	ENSCSAG00000005169	SMNDC1	81	99.482	Chlorocebus_sabaeus
ENSCHOG00000002936	SMNDC1	100	96.891	ENSCPBG00000012837	SMNDC1	81	96.891	Chrysemys_picta_bellii
ENSCHOG00000002936	SMNDC1	100	91.192	ENSCANG00000034620	-	81	91.192	Colobus_angolensis_palliatus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSCANG00000031720	-	81	99.482	Colobus_angolensis_palliatus
ENSCHOG00000002936	SMNDC1	100	83.420	ENSCANG00000036994	-	85	83.420	Colobus_angolensis_palliatus
ENSCHOG00000002936	SMNDC1	100	98.446	ENSCGRG00001012973	Smndc1	81	98.446	Cricetulus_griseus_chok1gshd
ENSCHOG00000002936	SMNDC1	100	98.446	ENSCGRG00000012396	Smndc1	81	98.446	Cricetulus_griseus_crigri
ENSCHOG00000002936	SMNDC1	100	70.984	ENSCSEG00000015621	smndc1	87	70.984	Cynoglossus_semilaevis
ENSCHOG00000002936	SMNDC1	100	72.021	ENSCVAG00000020432	smndc1	81	72.021	Cyprinodon_variegatus
ENSCHOG00000002936	SMNDC1	100	74.611	ENSDARG00000056235	smndc1	81	74.611	Danio_rerio
ENSCHOG00000002936	SMNDC1	100	99.482	ENSDNOG00000016387	SMNDC1	67	99.482	Dasypus_novemcinctus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSDORG00000023715	Smndc1	81	99.482	Dipodomys_ordii
ENSCHOG00000002936	SMNDC1	90	40.102	FBgn0039977	CG17454	82	40.385	Drosophila_melanogaster
ENSCHOG00000002936	SMNDC1	100	66.837	ENSEBUG00000010929	smndc1	81	66.837	Eptatretus_burgeri
ENSCHOG00000002936	SMNDC1	100	99.482	ENSEASG00005014930	SMNDC1	81	99.482	Equus_asinus_asinus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSECAG00000029973	SMNDC1	81	99.482	Equus_caballus
ENSCHOG00000002936	SMNDC1	79	62.745	ENSEEUG00000013407	-	77	62.745	Erinaceus_europaeus
ENSCHOG00000002936	SMNDC1	100	74.093	ENSELUG00000000227	smndc1	81	74.093	Esox_lucius
ENSCHOG00000002936	SMNDC1	100	99.482	ENSFCAG00000027353	SMNDC1	81	99.482	Felis_catus
ENSCHOG00000002936	SMNDC1	100	94.819	ENSFALG00000002306	SMNDC1	81	94.819	Ficedula_albicollis
ENSCHOG00000002936	SMNDC1	100	97.927	ENSFDAG00000006468	SMNDC1	81	97.927	Fukomys_damarensis
ENSCHOG00000002936	SMNDC1	100	71.503	ENSFHEG00000020150	smndc1	81	71.503	Fundulus_heteroclitus
ENSCHOG00000002936	SMNDC1	100	73.575	ENSGMOG00000016585	smndc1	81	73.575	Gadus_morhua
ENSCHOG00000002936	SMNDC1	100	94.819	ENSGALG00000008561	SMNDC1	81	94.819	Gallus_gallus
ENSCHOG00000002936	SMNDC1	100	70.466	ENSGAFG00000011582	smndc1	81	70.466	Gambusia_affinis
ENSCHOG00000002936	SMNDC1	100	70.984	ENSGACG00000009468	smndc1	81	70.984	Gasterosteus_aculeatus
ENSCHOG00000002936	SMNDC1	100	96.891	ENSGAGG00000024547	SMNDC1	81	96.891	Gopherus_agassizii
ENSCHOG00000002936	SMNDC1	100	99.482	ENSGGOG00000010071	SMNDC1	81	99.482	Gorilla_gorilla
ENSCHOG00000002936	SMNDC1	100	72.021	ENSHBUG00000017596	smndc1	81	72.021	Haplochromis_burtoni
ENSCHOG00000002936	SMNDC1	100	97.927	ENSHGLG00000013390	-	81	97.927	Heterocephalus_glaber_female
ENSCHOG00000002936	SMNDC1	100	64.322	ENSHGLG00000001157	-	79	60.500	Heterocephalus_glaber_female
ENSCHOG00000002936	SMNDC1	100	74.372	ENSHGLG00100004278	-	80	74.372	Heterocephalus_glaber_male
ENSCHOG00000002936	SMNDC1	100	97.927	ENSHGLG00100004814	-	81	97.927	Heterocephalus_glaber_male
ENSCHOG00000002936	SMNDC1	100	70.103	ENSHCOG00000000783	smndc1	81	70.103	Hippocampus_comes
ENSCHOG00000002936	SMNDC1	100	72.539	ENSIPUG00000004217	smndc1	81	72.539	Ictalurus_punctatus
ENSCHOG00000002936	SMNDC1	100	98.964	ENSSTOG00000006088	SMNDC1	81	98.964	Ictidomys_tridecemlineatus
ENSCHOG00000002936	SMNDC1	100	98.446	ENSJJAG00000019974	Smndc1	81	98.446	Jaculus_jaculus
ENSCHOG00000002936	SMNDC1	100	70.466	ENSKMAG00000020134	smndc1	81	70.466	Kryptolebias_marmoratus
ENSCHOG00000002936	SMNDC1	100	69.948	ENSLBEG00000004598	smndc1	81	69.948	Labrus_bergylta
ENSCHOG00000002936	SMNDC1	100	79.793	ENSLACG00000007784	SMNDC1	81	79.793	Latimeria_chalumnae
ENSCHOG00000002936	SMNDC1	100	80.829	ENSLOCG00000012355	smndc1	81	80.829	Lepisosteus_oculatus
ENSCHOG00000002936	SMNDC1	100	98.964	ENSLAFG00000014353	SMNDC1	81	98.964	Loxodonta_africana
ENSCHOG00000002936	SMNDC1	100	79.275	ENSMFAG00000038381	-	78	79.275	Macaca_fascicularis
ENSCHOG00000002936	SMNDC1	100	99.482	ENSMFAG00000002433	-	81	99.482	Macaca_fascicularis
ENSCHOG00000002936	SMNDC1	100	99.482	ENSMMUG00000007775	SMNDC1	81	99.482	Macaca_mulatta
ENSCHOG00000002936	SMNDC1	100	79.275	ENSMMUG00000045875	-	78	79.275	Macaca_mulatta
ENSCHOG00000002936	SMNDC1	93	90.000	ENSMNEG00000033853	-	79	90.000	Macaca_nemestrina
ENSCHOG00000002936	SMNDC1	100	99.482	ENSMNEG00000042963	-	81	99.482	Macaca_nemestrina
ENSCHOG00000002936	SMNDC1	100	91.753	ENSMLEG00000040236	SMNDC1	81	91.237	Mandrillus_leucophaeus
ENSCHOG00000002936	SMNDC1	100	73.575	ENSMAMG00000018233	smndc1	79	73.575	Mastacembelus_armatus
ENSCHOG00000002936	SMNDC1	100	72.021	ENSMZEG00005027510	smndc1	83	70.984	Maylandia_zebra
ENSCHOG00000002936	SMNDC1	80	94.194	ENSMGAG00000010777	SMNDC1	65	94.194	Meleagris_gallopavo
ENSCHOG00000002936	SMNDC1	100	99.482	ENSMAUG00000012243	-	81	99.482	Mesocricetus_auratus
ENSCHOG00000002936	SMNDC1	99	78.646	ENSMAUG00000005459	-	76	81.250	Mesocricetus_auratus
ENSCHOG00000002936	SMNDC1	100	98.446	ENSMICG00000027336	-	81	98.446	Microcebus_murinus
ENSCHOG00000002936	SMNDC1	100	84.456	ENSMICG00000031640	-	80	84.456	Microcebus_murinus
ENSCHOG00000002936	SMNDC1	100	98.964	ENSMOCG00000002458	Smndc1	81	98.964	Microtus_ochrogaster
ENSCHOG00000002936	SMNDC1	100	72.021	ENSMMOG00000008856	smndc1	81	72.021	Mola_mola
ENSCHOG00000002936	SMNDC1	100	98.446	ENSMODG00000010542	SMNDC1	81	98.446	Monodelphis_domestica
ENSCHOG00000002936	SMNDC1	100	72.539	ENSMALG00000017598	smndc1	81	72.539	Monopterus_albus
ENSCHOG00000002936	SMNDC1	100	97.927	MGP_CAROLIEiJ_G0023072	Smndc1	81	97.927	Mus_caroli
ENSCHOG00000002936	SMNDC1	100	98.446	ENSMUSG00000025024	Smndc1	81	98.446	Mus_musculus
ENSCHOG00000002936	SMNDC1	100	97.927	MGP_PahariEiJ_G0014560	Smndc1	81	97.927	Mus_pahari
ENSCHOG00000002936	SMNDC1	100	98.446	MGP_SPRETEiJ_G0023993	Smndc1	81	98.446	Mus_spretus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSMPUG00000002089	SMNDC1	81	99.482	Mustela_putorius_furo
ENSCHOG00000002936	SMNDC1	100	97.927	ENSMLUG00000016007	SMNDC1	81	97.927	Myotis_lucifugus
ENSCHOG00000002936	SMNDC1	100	98.446	ENSNGAG00000006833	Smndc1	81	98.446	Nannospalax_galili
ENSCHOG00000002936	SMNDC1	100	71.503	ENSNBRG00000017089	smndc1	81	71.503	Neolamprologus_brichardi
ENSCHOG00000002936	SMNDC1	100	99.482	ENSNLEG00000015471	SMNDC1	81	99.482	Nomascus_leucogenys
ENSCHOG00000002936	SMNDC1	78	53.548	ENSMEUG00000010120	-	76	54.194	Notamacropus_eugenii
ENSCHOG00000002936	SMNDC1	100	98.446	ENSOPRG00000015348	SMNDC1	81	98.446	Ochotona_princeps
ENSCHOG00000002936	SMNDC1	100	65.803	ENSODEG00000007594	-	78	62.176	Octodon_degus
ENSCHOG00000002936	SMNDC1	100	71.503	ENSONIG00000000434	smndc1	81	71.503	Oreochromis_niloticus
ENSCHOG00000002936	SMNDC1	100	96.891	ENSOANG00000001598	SMNDC1	81	96.891	Ornithorhynchus_anatinus
ENSCHOG00000002936	SMNDC1	100	98.446	ENSOCUG00000008145	-	81	98.446	Oryctolagus_cuniculus
ENSCHOG00000002936	SMNDC1	92	77.966	ENSOCUG00000012274	-	76	80.226	Oryctolagus_cuniculus
ENSCHOG00000002936	SMNDC1	100	71.503	ENSORLG00000005934	smndc1	77	71.503	Oryzias_latipes
ENSCHOG00000002936	SMNDC1	100	71.503	ENSORLG00020008796	smndc1	77	71.503	Oryzias_latipes_hni
ENSCHOG00000002936	SMNDC1	100	71.503	ENSORLG00015013666	smndc1	81	71.503	Oryzias_latipes_hsok
ENSCHOG00000002936	SMNDC1	100	73.057	ENSOMEG00000007590	smndc1	81	73.057	Oryzias_melastigma
ENSCHOG00000002936	SMNDC1	100	98.964	ENSOGAG00000000571	SMNDC1	81	98.964	Otolemur_garnettii
ENSCHOG00000002936	SMNDC1	100	98.964	ENSOARG00000009500	SMNDC1	81	98.964	Ovis_aries
ENSCHOG00000002936	SMNDC1	100	99.482	ENSPPAG00000027815	SMNDC1	81	99.482	Pan_paniscus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSPPRG00000013749	SMNDC1	81	99.482	Panthera_pardus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSPTIG00000011451	SMNDC1	81	99.482	Panthera_tigris_altaica
ENSCHOG00000002936	SMNDC1	100	99.482	ENSPTRG00000002937	SMNDC1	81	99.482	Pan_troglodytes
ENSCHOG00000002936	SMNDC1	100	93.264	ENSPANG00000031346	-	81	93.264	Papio_anubis
ENSCHOG00000002936	SMNDC1	100	99.482	ENSPANG00000020805	-	81	99.482	Papio_anubis
ENSCHOG00000002936	SMNDC1	100	76.684	ENSPKIG00000017164	smndc1	81	76.684	Paramormyrops_kingsleyae
ENSCHOG00000002936	SMNDC1	100	96.373	ENSPSIG00000012257	SMNDC1	81	96.373	Pelodiscus_sinensis
ENSCHOG00000002936	SMNDC1	100	68.394	ENSPMGG00000015651	smndc1	81	68.394	Periophthalmus_magnuspinnatus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSPEMG00000022058	Smndc1	81	99.482	Peromyscus_maniculatus_bairdii
ENSCHOG00000002936	SMNDC1	100	63.265	ENSPMAG00000007705	smndc1	81	63.265	Petromyzon_marinus
ENSCHOG00000002936	SMNDC1	100	98.446	ENSPCIG00000018419	SMNDC1	81	98.446	Phascolarctos_cinereus
ENSCHOG00000002936	SMNDC1	95	58.152	ENSPCIG00000009693	-	77	58.152	Phascolarctos_cinereus
ENSCHOG00000002936	SMNDC1	100	70.984	ENSPFOG00000017113	smndc1	81	70.984	Poecilia_formosa
ENSCHOG00000002936	SMNDC1	100	71.503	ENSPLAG00000010372	smndc1	81	71.503	Poecilia_latipinna
ENSCHOG00000002936	SMNDC1	100	71.503	ENSPMEG00000012288	smndc1	81	71.503	Poecilia_mexicana
ENSCHOG00000002936	SMNDC1	100	70.466	ENSPREG00000012279	smndc1	81	70.466	Poecilia_reticulata
ENSCHOG00000002936	SMNDC1	100	99.482	ENSPPYG00000002643	SMNDC1	81	99.482	Pongo_abelii
ENSCHOG00000002936	SMNDC1	100	97.927	ENSPCAG00000016183	SMNDC1	100	97.927	Procavia_capensis
ENSCHOG00000002936	SMNDC1	100	98.964	ENSPCOG00000024343	SMNDC1	81	98.964	Propithecus_coquereli
ENSCHOG00000002936	SMNDC1	100	69.948	ENSPVAG00000004368	SMNDC1	81	69.948	Pteropus_vampyrus
ENSCHOG00000002936	SMNDC1	91	63.889	ENSPNYG00000024093	smndc1	79	63.889	Pundamilia_nyererei
ENSCHOG00000002936	SMNDC1	100	71.503	ENSPNAG00000025285	smndc1	81	71.503	Pygocentrus_nattereri
ENSCHOG00000002936	SMNDC1	100	97.927	ENSRNOG00000014833	Smndc1	81	97.927	Rattus_norvegicus
ENSCHOG00000002936	SMNDC1	100	98.964	ENSRBIG00000000224	-	81	98.964	Rhinopithecus_bieti
ENSCHOG00000002936	SMNDC1	96	90.811	ENSRBIG00000032452	-	85	90.811	Rhinopithecus_bieti
ENSCHOG00000002936	SMNDC1	96	91.351	ENSRROG00000039125	-	85	91.351	Rhinopithecus_roxellana
ENSCHOG00000002936	SMNDC1	100	99.482	ENSRROG00000044992	-	81	99.482	Rhinopithecus_roxellana
ENSCHOG00000002936	SMNDC1	100	99.482	ENSSBOG00000026789	SMNDC1	81	99.482	Saimiri_boliviensis_boliviensis
ENSCHOG00000002936	SMNDC1	100	98.446	ENSSHAG00000015189	SMNDC1	81	98.446	Sarcophilus_harrisii
ENSCHOG00000002936	SMNDC1	100	75.648	ENSSFOG00015008311	smndc1	81	75.648	Scleropages_formosus
ENSCHOG00000002936	SMNDC1	100	71.503	ENSSMAG00000020118	smndc1	81	71.503	Scophthalmus_maximus
ENSCHOG00000002936	SMNDC1	100	72.539	ENSSDUG00000015330	smndc1	81	72.539	Seriola_dumerili
ENSCHOG00000002936	SMNDC1	100	72.539	ENSSLDG00000017325	smndc1	81	72.539	Seriola_lalandi_dorsalis
ENSCHOG00000002936	SMNDC1	100	97.927	ENSSARG00000006063	SMNDC1	81	97.927	Sorex_araneus
ENSCHOG00000002936	SMNDC1	100	94.819	ENSSPUG00000004574	SMNDC1	81	94.819	Sphenodon_punctatus
ENSCHOG00000002936	SMNDC1	100	69.430	ENSSPAG00000000338	smndc1	81	69.430	Stegastes_partitus
ENSCHOG00000002936	SMNDC1	100	98.964	ENSSSCG00000030507	SMNDC1	81	98.964	Sus_scrofa
ENSCHOG00000002936	SMNDC1	100	94.819	ENSTGUG00000010599	SMNDC1	81	94.819	Taeniopygia_guttata
ENSCHOG00000002936	SMNDC1	100	69.948	ENSTRUG00000023281	smndc1	81	69.948	Takifugu_rubripes
ENSCHOG00000002936	SMNDC1	100	70.466	ENSTNIG00000013331	smndc1	81	70.466	Tetraodon_nigroviridis
ENSCHOG00000002936	SMNDC1	100	98.964	ENSTBEG00000014337	SMNDC1	81	98.964	Tupaia_belangeri
ENSCHOG00000002936	SMNDC1	100	99.482	ENSUAMG00000008142	SMNDC1	81	99.482	Ursus_americanus
ENSCHOG00000002936	SMNDC1	100	99.482	ENSUMAG00000023722	SMNDC1	81	99.482	Ursus_maritimus
ENSCHOG00000002936	SMNDC1	79	98.693	ENSVPAG00000003402	SMNDC1	77	98.693	Vicugna_pacos
ENSCHOG00000002936	SMNDC1	100	99.482	ENSVVUG00000007820	SMNDC1	81	99.482	Vulpes_vulpes
ENSCHOG00000002936	SMNDC1	74	81.690	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSCHOG00000002936	SMNDC1	100	70.466	ENSXCOG00000009159	smndc1	81	70.466	Xiphophorus_couchianus
ENSCHOG00000002936	SMNDC1	100	69.948	ENSXMAG00000012755	smndc1	81	69.948	Xiphophorus_maculatus