EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHOG00000003420 (Gene tree)
Gene ID: -
Gene Symbol: LSM6
Alias: YDR378C
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Plus strand
Length: 5936 bases
Position: chrscaffold_1430:26312-32247
Accession: 17017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000003025	LSM	PF01423.22	1.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000003431	LSM6-201	192	-	ENSCHOP00000003025	63 (aa)	-	UPI0001F9EB8F

Gene Model

Click here to download ENSCHOG00000003420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000003420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHOG00000003420	LSM6	84	45.283	ENSCHOG00000009392	SNRPF	83	45.283

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000003420	LSM6	100	78.750	ENSG00000164167	LSM6	100	78.750	Homo_sapiens
ENSCHOG00000003420	LSM6	100	75.000	ENSAPOG00000019832	lsm6	100	75.000	Acanthochromis_polyacanthus
ENSCHOG00000003420	LSM6	100	78.750	ENSAMEG00000016671	LSM6	100	78.750	Ailuropoda_melanoleuca
ENSCHOG00000003420	LSM6	100	75.000	ENSACIG00000016711	lsm6	100	75.000	Amphilophus_citrinellus
ENSCHOG00000003420	LSM6	100	75.000	ENSAOCG00000002110	lsm6	52	75.000	Amphiprion_ocellaris
ENSCHOG00000003420	LSM6	84	98.113	ENSAPEG00000023992	lsm6	100	75.000	Amphiprion_percula
ENSCHOG00000003420	LSM6	100	75.000	ENSATEG00000012610	lsm6	100	75.000	Anabas_testudineus
ENSCHOG00000003420	LSM6	95	77.922	ENSAPLG00000012594	LSM6	99	77.922	Anas_platyrhynchos
ENSCHOG00000003420	LSM6	100	78.750	ENSACAG00000004004	LSM6	100	78.750	Anolis_carolinensis
ENSCHOG00000003420	LSM6	100	78.667	ENSANAG00000021839	-	100	78.667	Aotus_nancymaae
ENSCHOG00000003420	LSM6	100	78.750	ENSANAG00000030568	-	100	78.750	Aotus_nancymaae
ENSCHOG00000003420	LSM6	100	75.000	ENSACLG00000025621	lsm6	100	75.000	Astatotilapia_calliptera
ENSCHOG00000003420	LSM6	100	76.250	ENSAMXG00000038738	lsm6	100	76.250	Astyanax_mexicanus
ENSCHOG00000003420	LSM6	100	78.750	ENSBTAG00000014060	LSM6	100	78.750	Bos_taurus
ENSCHOG00000003420	LSM6	100	75.000	ENSBTAG00000052085	-	100	75.000	Bos_taurus
ENSCHOG00000003420	LSM6	79	80.000	WBGene00003080	lsm-6	65	80.000	Caenorhabditis_elegans
ENSCHOG00000003420	LSM6	84	100.000	ENSCJAG00000002482	LSM6	100	78.750	Callithrix_jacchus
ENSCHOG00000003420	LSM6	100	78.750	ENSCAFG00000007738	LSM6	100	78.750	Canis_familiaris
ENSCHOG00000003420	LSM6	100	78.750	ENSCAFG00020025902	LSM6	100	78.750	Canis_lupus_dingo
ENSCHOG00000003420	LSM6	100	63.750	ENSCHIG00000024198	-	95	63.750	Capra_hircus
ENSCHOG00000003420	LSM6	84	100.000	ENSCHIG00000012864	-	75	100.000	Capra_hircus
ENSCHOG00000003420	LSM6	100	78.750	ENSCHIG00000010334	-	100	78.750	Capra_hircus
ENSCHOG00000003420	LSM6	100	78.750	ENSTSYG00000026972	LSM6	100	78.750	Carlito_syrichta
ENSCHOG00000003420	LSM6	76	91.667	ENSTSYG00000012759	-	63	91.667	Carlito_syrichta
ENSCHOG00000003420	LSM6	100	78.750	ENSCAPG00000008104	LSM6	100	78.750	Cavia_aperea
ENSCHOG00000003420	LSM6	84	98.113	ENSCAPG00000011179	-	82	98.113	Cavia_aperea
ENSCHOG00000003420	LSM6	100	78.750	ENSCPOG00000032655	LSM6	100	78.750	Cavia_porcellus
ENSCHOG00000003420	LSM6	98	77.215	ENSCCAG00000020665	-	99	77.215	Cebus_capucinus
ENSCHOG00000003420	LSM6	100	78.750	ENSCCAG00000036437	LSM6	100	78.750	Cebus_capucinus
ENSCHOG00000003420	LSM6	100	78.750	ENSCATG00000002770	-	100	78.750	Cercocebus_atys
ENSCHOG00000003420	LSM6	100	66.667	ENSCATG00000038799	-	100	66.667	Cercocebus_atys
ENSCHOG00000003420	LSM6	100	78.750	ENSCLAG00000005495	LSM6	100	78.750	Chinchilla_lanigera
ENSCHOG00000003420	LSM6	95	75.000	ENSCLAG00000005685	-	86	75.000	Chinchilla_lanigera
ENSCHOG00000003420	LSM6	100	78.750	ENSCSAG00000003421	LSM6	100	78.750	Chlorocebus_sabaeus
ENSCHOG00000003420	LSM6	100	78.750	ENSCPBG00000027472	LSM6	84	78.750	Chrysemys_picta_bellii
ENSCHOG00000003420	LSM6	94	73.684	ENSCING00000019152	-	93	73.684	Ciona_intestinalis
ENSCHOG00000003420	LSM6	94	75.000	ENSCSAVG00000002065	-	93	75.000	Ciona_savignyi
ENSCHOG00000003420	LSM6	100	78.750	ENSCANG00000041263	-	100	78.750	Colobus_angolensis_palliatus
ENSCHOG00000003420	LSM6	100	78.750	ENSCANG00000006849	-	100	78.750	Colobus_angolensis_palliatus
ENSCHOG00000003420	LSM6	100	66.667	ENSCANG00000035214	-	100	66.667	Colobus_angolensis_palliatus
ENSCHOG00000003420	LSM6	100	78.750	ENSCGRG00001017142	Lsm6	100	78.750	Cricetulus_griseus_chok1gshd
ENSCHOG00000003420	LSM6	100	78.750	ENSCGRG00000008320	Lsm6	100	78.750	Cricetulus_griseus_crigri
ENSCHOG00000003420	LSM6	100	75.000	ENSCSEG00000000423	lsm6	100	75.000	Cynoglossus_semilaevis
ENSCHOG00000003420	LSM6	100	75.000	ENSCVAG00000001592	lsm6	100	75.000	Cyprinodon_variegatus
ENSCHOG00000003420	LSM6	100	76.250	ENSDARG00000036995	lsm6	100	76.250	Danio_rerio
ENSCHOG00000003420	LSM6	84	100.000	ENSDNOG00000040186	-	57	100.000	Dasypus_novemcinctus
ENSCHOG00000003420	LSM6	100	78.750	ENSDNOG00000044848	-	100	78.750	Dasypus_novemcinctus
ENSCHOG00000003420	LSM6	100	78.750	ENSDORG00000000933	Lsm6	100	78.750	Dipodomys_ordii
ENSCHOG00000003420	LSM6	95	63.636	FBgn0034564	CG9344	97	63.636	Drosophila_melanogaster
ENSCHOG00000003420	LSM6	100	77.500	ENSEBUG00000017073	lsm6	100	77.500	Eptatretus_burgeri
ENSCHOG00000003420	LSM6	84	100.000	ENSEASG00005001533	LSM6	55	100.000	Equus_asinus_asinus
ENSCHOG00000003420	LSM6	100	78.750	ENSECAG00000021036	LSM6	100	78.750	Equus_caballus
ENSCHOG00000003420	LSM6	98	50.633	ENSEEUG00000002101	LSM6	100	50.633	Erinaceus_europaeus
ENSCHOG00000003420	LSM6	100	76.250	ENSELUG00000014301	LSM6	100	76.250	Esox_lucius
ENSCHOG00000003420	LSM6	100	78.750	ENSFCAG00000003047	LSM6	100	78.750	Felis_catus
ENSCHOG00000003420	LSM6	100	78.750	ENSFALG00000005509	LSM6	92	78.750	Ficedula_albicollis
ENSCHOG00000003420	LSM6	100	71.250	ENSFDAG00000019073	-	100	71.250	Fukomys_damarensis
ENSCHOG00000003420	LSM6	100	78.750	ENSFDAG00000020913	-	100	78.750	Fukomys_damarensis
ENSCHOG00000003420	LSM6	84	98.113	ENSFHEG00000007948	lsm6	100	75.000	Fundulus_heteroclitus
ENSCHOG00000003420	LSM6	100	75.000	ENSGMOG00000015550	lsm6	100	75.000	Gadus_morhua
ENSCHOG00000003420	LSM6	100	78.750	ENSGALG00000009985	LSM6	100	78.750	Gallus_gallus
ENSCHOG00000003420	LSM6	84	98.113	ENSGAFG00000017763	lsm6	100	75.000	Gambusia_affinis
ENSCHOG00000003420	LSM6	98	75.949	ENSGACG00000017223	lsm6	99	75.949	Gasterosteus_aculeatus
ENSCHOG00000003420	LSM6	100	78.750	ENSGAGG00000020980	LSM6	100	78.750	Gopherus_agassizii
ENSCHOG00000003420	LSM6	100	78.750	ENSGGOG00000001310	LSM6	100	78.750	Gorilla_gorilla
ENSCHOG00000003420	LSM6	100	75.000	ENSHBUG00000008618	lsm6	100	75.000	Haplochromis_burtoni
ENSCHOG00000003420	LSM6	100	78.750	ENSHGLG00000000205	LSM6	100	78.750	Heterocephalus_glaber_female
ENSCHOG00000003420	LSM6	100	78.750	ENSHGLG00100014341	LSM6	100	78.750	Heterocephalus_glaber_male
ENSCHOG00000003420	LSM6	100	75.000	ENSHCOG00000005591	lsm6	100	75.000	Hippocampus_comes
ENSCHOG00000003420	LSM6	100	75.000	ENSIPUG00000004508	lsm6	100	75.000	Ictalurus_punctatus
ENSCHOG00000003420	LSM6	100	78.750	ENSSTOG00000002678	LSM6	100	78.750	Ictidomys_tridecemlineatus
ENSCHOG00000003420	LSM6	100	78.750	ENSJJAG00000013845	-	100	78.750	Jaculus_jaculus
ENSCHOG00000003420	LSM6	95	61.039	ENSJJAG00000016942	-	97	61.039	Jaculus_jaculus
ENSCHOG00000003420	LSM6	100	71.250	ENSJJAG00000011211	-	100	71.250	Jaculus_jaculus
ENSCHOG00000003420	LSM6	100	75.000	ENSKMAG00000004105	lsm6	100	75.000	Kryptolebias_marmoratus
ENSCHOG00000003420	LSM6	100	75.000	ENSLBEG00000018441	lsm6	100	75.000	Labrus_bergylta
ENSCHOG00000003420	LSM6	100	78.750	ENSLACG00000006937	LSM6	100	78.750	Latimeria_chalumnae
ENSCHOG00000003420	LSM6	100	75.000	ENSLOCG00000017683	-	100	75.000	Lepisosteus_oculatus
ENSCHOG00000003420	LSM6	100	76.250	ENSLOCG00000008852	lsm6	100	76.250	Lepisosteus_oculatus
ENSCHOG00000003420	LSM6	100	78.750	ENSLAFG00000001952	LSM6	100	78.750	Loxodonta_africana
ENSCHOG00000003420	LSM6	100	78.750	ENSMFAG00000033073	LSM6	100	78.750	Macaca_fascicularis
ENSCHOG00000003420	LSM6	100	68.000	ENSMNEG00000040412	-	100	68.000	Macaca_nemestrina
ENSCHOG00000003420	LSM6	100	78.750	ENSMNEG00000034820	-	100	78.750	Macaca_nemestrina
ENSCHOG00000003420	LSM6	100	78.750	ENSMLEG00000035153	LSM6	100	78.750	Mandrillus_leucophaeus
ENSCHOG00000003420	LSM6	100	75.000	ENSMAMG00000014029	lsm6	100	75.000	Mastacembelus_armatus
ENSCHOG00000003420	LSM6	100	75.000	ENSMZEG00005009146	lsm6	100	75.000	Maylandia_zebra
ENSCHOG00000003420	LSM6	100	78.750	ENSMGAG00000003802	LSM6	100	78.750	Meleagris_gallopavo
ENSCHOG00000003420	LSM6	100	78.750	ENSMAUG00000014938	Lsm6	100	78.750	Mesocricetus_auratus
ENSCHOG00000003420	LSM6	100	78.750	ENSMICG00000042599	LSM6	100	78.750	Microcebus_murinus
ENSCHOG00000003420	LSM6	84	100.000	ENSMICG00000047411	-	62	100.000	Microcebus_murinus
ENSCHOG00000003420	LSM6	100	78.750	ENSMOCG00000020049	Lsm6	100	78.750	Microtus_ochrogaster
ENSCHOG00000003420	LSM6	84	92.453	ENSMMOG00000007379	-	67	92.453	Mola_mola
ENSCHOG00000003420	LSM6	100	75.000	ENSMMOG00000005470	lsm6	100	75.000	Mola_mola
ENSCHOG00000003420	LSM6	100	78.750	ENSMODG00000000526	LSM6	100	78.750	Monodelphis_domestica
ENSCHOG00000003420	LSM6	84	98.113	ENSMALG00000002419	lsm6	100	75.000	Monopterus_albus
ENSCHOG00000003420	LSM6	100	78.750	MGP_CAROLIEiJ_G0031245	Lsm6	100	78.750	Mus_caroli
ENSCHOG00000003420	LSM6	100	78.750	ENSMUSG00000031683	Lsm6	100	78.750	Mus_musculus
ENSCHOG00000003420	LSM6	100	78.750	MGP_PahariEiJ_G0022851	Lsm6	100	78.750	Mus_pahari
ENSCHOG00000003420	LSM6	100	78.750	MGP_SPRETEiJ_G0032365	Lsm6	100	78.750	Mus_spretus
ENSCHOG00000003420	LSM6	98	78.481	ENSMPUG00000006936	LSM6	92	78.481	Mustela_putorius_furo
ENSCHOG00000003420	LSM6	100	78.750	ENSMLUG00000026355	LSM6	100	78.750	Myotis_lucifugus
ENSCHOG00000003420	LSM6	100	78.750	ENSNGAG00000019116	Lsm6	100	78.750	Nannospalax_galili
ENSCHOG00000003420	LSM6	84	98.113	ENSNBRG00000004887	lsm6	100	75.000	Neolamprologus_brichardi
ENSCHOG00000003420	LSM6	100	78.750	ENSNLEG00000005584	LSM6	100	78.750	Nomascus_leucogenys
ENSCHOG00000003420	LSM6	100	78.481	ENSOPRG00000011199	LSM6	100	78.481	Ochotona_princeps
ENSCHOG00000003420	LSM6	94	81.356	ENSODEG00000018684	-	77	81.356	Octodon_degus
ENSCHOG00000003420	LSM6	100	77.500	ENSODEG00000002307	-	100	77.500	Octodon_degus
ENSCHOG00000003420	LSM6	100	77.500	ENSODEG00000020420	-	100	77.500	Octodon_degus
ENSCHOG00000003420	LSM6	100	75.000	ENSODEG00000019419	-	100	75.000	Octodon_degus
ENSCHOG00000003420	LSM6	100	75.000	ENSONIG00000010005	lsm6	100	75.000	Oreochromis_niloticus
ENSCHOG00000003420	LSM6	97	52.564	ENSOANG00000006894	-	100	52.564	Ornithorhynchus_anatinus
ENSCHOG00000003420	LSM6	97	52.564	ENSOANG00000006895	-	100	52.564	Ornithorhynchus_anatinus
ENSCHOG00000003420	LSM6	100	73.750	ENSORLG00000024158	lsm6	100	73.750	Oryzias_latipes
ENSCHOG00000003420	LSM6	84	96.226	ENSORLG00020017383	lsm6	100	73.750	Oryzias_latipes_hni
ENSCHOG00000003420	LSM6	100	73.750	ENSORLG00015016903	lsm6	100	73.750	Oryzias_latipes_hsok
ENSCHOG00000003420	LSM6	100	75.000	ENSOMEG00000000074	lsm6	100	75.000	Oryzias_melastigma
ENSCHOG00000003420	LSM6	100	78.750	ENSOGAG00000026665	-	100	78.750	Otolemur_garnettii
ENSCHOG00000003420	LSM6	100	78.750	ENSOGAG00000033153	-	100	78.750	Otolemur_garnettii
ENSCHOG00000003420	LSM6	84	100.000	ENSOARG00000008509	-	68	100.000	Ovis_aries
ENSCHOG00000003420	LSM6	98	72.152	ENSOARG00000011641	-	92	72.152	Ovis_aries
ENSCHOG00000003420	LSM6	100	78.750	ENSPPAG00000037929	LSM6	100	78.750	Pan_paniscus
ENSCHOG00000003420	LSM6	100	78.750	ENSPPRG00000012806	LSM6	100	78.750	Panthera_pardus
ENSCHOG00000003420	LSM6	100	78.750	ENSPTIG00000019769	LSM6	100	78.750	Panthera_tigris_altaica
ENSCHOG00000003420	LSM6	100	78.750	ENSPTRG00000016488	LSM6	100	78.750	Pan_troglodytes
ENSCHOG00000003420	LSM6	100	78.750	ENSPANG00000006552	LSM6	100	78.750	Papio_anubis
ENSCHOG00000003420	LSM6	100	76.250	ENSPKIG00000016176	lsm6	100	76.250	Paramormyrops_kingsleyae
ENSCHOG00000003420	LSM6	100	78.750	ENSPSIG00000016942	LSM6	100	78.750	Pelodiscus_sinensis
ENSCHOG00000003420	LSM6	100	75.000	ENSPMGG00000018004	lsm6	100	75.000	Periophthalmus_magnuspinnatus
ENSCHOG00000003420	LSM6	100	78.750	ENSPEMG00000012410	Lsm6	100	78.750	Peromyscus_maniculatus_bairdii
ENSCHOG00000003420	LSM6	100	77.500	ENSPMAG00000006949	lsm6	100	77.500	Petromyzon_marinus
ENSCHOG00000003420	LSM6	84	100.000	ENSPCIG00000023469	LSM6	62	100.000	Phascolarctos_cinereus
ENSCHOG00000003420	LSM6	100	75.000	ENSPFOG00000008881	lsm6	100	75.000	Poecilia_formosa
ENSCHOG00000003420	LSM6	100	75.000	ENSPLAG00000003202	lsm6	100	75.000	Poecilia_latipinna
ENSCHOG00000003420	LSM6	100	75.000	ENSPMEG00000004000	lsm6	100	75.000	Poecilia_mexicana
ENSCHOG00000003420	LSM6	100	75.000	ENSPREG00000023235	lsm6	100	75.000	Poecilia_reticulata
ENSCHOG00000003420	LSM6	100	78.750	ENSPPYG00000015105	LSM6	100	78.750	Pongo_abelii
ENSCHOG00000003420	LSM6	100	78.750	ENSPCOG00000013899	LSM6	100	78.750	Propithecus_coquereli
ENSCHOG00000003420	LSM6	84	98.113	ENSPNYG00000012614	lsm6	100	75.000	Pundamilia_nyererei
ENSCHOG00000003420	LSM6	100	76.250	ENSPNAG00000018779	lsm6	100	76.250	Pygocentrus_nattereri
ENSCHOG00000003420	LSM6	100	78.750	ENSRNOG00000030374	Lsm6	100	78.750	Rattus_norvegicus
ENSCHOG00000003420	LSM6	100	78.750	ENSRNOG00000049370	LOC100360750	100	78.750	Rattus_norvegicus
ENSCHOG00000003420	LSM6	100	78.750	ENSRBIG00000027878	LSM6	100	78.750	Rhinopithecus_bieti
ENSCHOG00000003420	LSM6	100	78.750	ENSRROG00000024868	LSM6	100	78.750	Rhinopithecus_roxellana
ENSCHOG00000003420	LSM6	79	44.000	YDR378C	-	58	44.000	Saccharomyces_cerevisiae
ENSCHOG00000003420	LSM6	100	78.750	ENSSBOG00000021229	-	100	78.750	Saimiri_boliviensis_boliviensis
ENSCHOG00000003420	LSM6	100	58.750	ENSSBOG00000028103	-	100	58.750	Saimiri_boliviensis_boliviensis
ENSCHOG00000003420	LSM6	100	76.250	ENSSFOG00015016480	lsm6	100	76.250	Scleropages_formosus
ENSCHOG00000003420	LSM6	84	98.113	ENSSMAG00000004550	lsm6	100	75.000	Scophthalmus_maximus
ENSCHOG00000003420	LSM6	100	75.000	ENSSDUG00000020459	lsm6	50	75.000	Seriola_dumerili
ENSCHOG00000003420	LSM6	100	75.000	ENSSLDG00000020533	lsm6	83	75.000	Seriola_lalandi_dorsalis
ENSCHOG00000003420	LSM6	100	78.750	ENSSPUG00000008657	LSM6	100	78.750	Sphenodon_punctatus
ENSCHOG00000003420	LSM6	100	75.000	ENSSPAG00000003246	lsm6	100	75.000	Stegastes_partitus
ENSCHOG00000003420	LSM6	100	78.750	ENSSSCG00000035973	LSM6	100	78.750	Sus_scrofa
ENSCHOG00000003420	LSM6	100	78.750	ENSTGUG00000002663	LSM6	100	78.750	Taeniopygia_guttata
ENSCHOG00000003420	LSM6	100	75.000	ENSTRUG00000023398	lsm6	100	75.000	Takifugu_rubripes
ENSCHOG00000003420	LSM6	100	75.000	ENSTNIG00000017725	lsm6	100	75.000	Tetraodon_nigroviridis
ENSCHOG00000003420	LSM6	100	78.750	ENSTTRG00000004609	LSM6	100	78.750	Tursiops_truncatus
ENSCHOG00000003420	LSM6	100	78.750	ENSVPAG00000006922	LSM6	100	78.750	Vicugna_pacos
ENSCHOG00000003420	LSM6	100	78.750	ENSVVUG00000009254	LSM6	68	78.750	Vulpes_vulpes
ENSCHOG00000003420	LSM6	100	78.750	ENSXETG00000023683	lsm6	100	78.750	Xenopus_tropicalis
ENSCHOG00000003420	LSM6	84	98.113	ENSXMAG00000009606	lsm6	100	75.000	Xiphophorus_maculatus