EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000003766 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Minus strand
Length: 40467 bases
Position: chrGeneScaffold_594:174-40640
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000003334	RNA_pol_Rpb1_5	PF04998.17	4.9e-15	1	1
ENSCHOP00000003334	RNA_pol_Rpb1_4	PF05000.17	3.6e-25	1	1
ENSCHOP00000003334	RNA_pol_Rpb1_2	PF00623.20	1.6e-46	1	2
ENSCHOP00000003334	RNA_pol_Rpb1_2	PF00623.20	1.6e-46	2	2
ENSCHOP00000003334	RNA_pol_Rpb1_3	PF04983.18	5.9e-19	1	1
ENSCHOP00000003334	RNA_pol_Rpb1_1	PF04997.12	8.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000003788	-	2964	-	ENSCHOP00000003334	988 (aa)	-	UPI0001F9EAEE

Gene Model

Click here to download ENSCHOG00000003766's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000003766's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000003766	-	84	95.294	ENSG00000068654	POLR1A	60	88.000	Homo_sapiens
ENSCHOG00000003766	-	84	80.905	ENSAPOG00000017945	polr1a	69	80.905	Acanthochromis_polyacanthus
ENSCHOG00000003766	-	84	96.471	ENSAMEG00000005807	POLR1A	84	93.289	Ailuropoda_melanoleuca
ENSCHOG00000003766	-	84	95.882	ENSCAFG00020014752	POLR1A	79	95.105	Canis_lupus_dingo
ENSCHOG00000003766	-	84	95.294	ENSCHIG00000018204	POLR1A	53	95.294	Capra_hircus
ENSCHOG00000003766	-	84	95.882	ENSECAG00000030510	-	50	95.882	Equus_caballus
ENSCHOG00000003766	-	83	81.765	ENSGALG00000038160	-	53	81.765	Gallus_gallus
ENSCHOG00000003766	-	84	79.899	ENSGACG00000018791	polr1a	50	79.899	Gasterosteus_aculeatus
ENSCHOG00000003766	-	66	85.294	ENSGAGG00000004984	-	76	84.500	Gopherus_agassizii
ENSCHOG00000003766	-	84	80.402	ENSHBUG00000020021	polr1a	53	80.402	Haplochromis_burtoni
ENSCHOG00000003766	-	84	79.397	ENSHCOG00000003345	polr1a	99	50.183	Hippocampus_comes
ENSCHOG00000003766	-	76	84.422	ENSLACG00000003218	polr1a	83	84.422	Latimeria_chalumnae
ENSCHOG00000003766	-	84	84.925	ENSLOCG00000010881	polr1a	50	84.925	Lepisosteus_oculatus
ENSCHOG00000003766	-	84	92.941	ENSMOCG00000000122	Polr1a	50	92.941	Microtus_ochrogaster
ENSCHOG00000003766	-	84	90.000	MGP_CAROLIEiJ_G0028494	Polr1a	99	72.760	Mus_caroli
ENSCHOG00000003766	-	84	90.955	ENSMUSG00000049553	Polr1a	99	72.043	Mus_musculus
ENSCHOG00000003766	-	84	92.941	MGP_PahariEiJ_G0022230	Polr1a	99	74.910	Mus_pahari
ENSCHOG00000003766	-	84	90.955	MGP_SPRETEiJ_G0029499	Polr1a	99	72.043	Mus_spretus
ENSCHOG00000003766	-	64	86.432	ENSOANG00000012384	-	88	86.432	Ornithorhynchus_anatinus
ENSCHOG00000003766	-	78	78.392	ENSPMGG00000009718	polr1a	77	78.392	Periophthalmus_magnuspinnatus
ENSCHOG00000003766	-	84	87.059	ENSPCIG00000004222	POLR1A	51	87.059	Phascolarctos_cinereus
ENSCHOG00000003766	-	84	87.059	ENSSPUG00000004215	POLR1A	52	87.059	Sphenodon_punctatus
ENSCHOG00000003766	-	83	80.905	ENSSPAG00000016341	polr1a	81	80.905	Stegastes_partitus
ENSCHOG00000003766	-	84	93.529	ENSSSCG00000008226	POLR1A	58	93.529	Sus_scrofa
ENSCHOG00000003766	-	84	77.889	ENSTRUG00000002210	polr1a	83	77.889	Takifugu_rubripes
ENSCHOG00000003766	-	84	96.471	ENSUMAG00000006700	POLR1A	81	95.804	Ursus_maritimus
ENSCHOG00000003766	-	84	87.940	ENSXETG00000001952	polr1a	58	87.940	Xenopus_tropicalis
ENSCHOG00000003766	-	53	78.894	ENSXCOG00000013384	polr1a	70	78.894	Xiphophorus_couchianus