EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000005201 (Gene tree)
Gene ID: -
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Minus strand
Length: 16403 bases
Position: chrGeneScaffold_1196:6210-22612
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000004612	PRP21_like_P	PF12230.8	3.5e-34	1	2
ENSCHOP00000004612	PRP21_like_P	PF12230.8	3.5e-34	2	2
ENSCHOP00000004612	Surp	PF01805.20	2.4e-46	1	2
ENSCHOP00000004612	Surp	PF01805.20	2.4e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000005222	SF3A1-201	2106	-	ENSCHOP00000004612	702 (aa)	-	UPI0001F9F2C8

Gene Model

Click here to download ENSCHOG00000005201's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000005201's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000005201	SF3A1	69	100.000	ENSG00000099995	SF3A1	67	95.238	Homo_sapiens
ENSCHOG00000005201	SF3A1	60	91.603	ENSAPOG00000020465	sf3a1	59	90.476	Acanthochromis_polyacanthus
ENSCHOG00000005201	SF3A1	69	99.262	ENSAMEG00000007737	SF3A1	61	99.262	Ailuropoda_melanoleuca
ENSCHOG00000005201	SF3A1	63	88.889	ENSACIG00000020672	sf3a1	59	89.434	Amphilophus_citrinellus
ENSCHOG00000005201	SF3A1	61	90.000	ENSAOCG00000003060	sf3a1	59	90.476	Amphiprion_ocellaris
ENSCHOG00000005201	SF3A1	61	90.000	ENSAPEG00000010735	sf3a1	59	90.476	Amphiprion_percula
ENSCHOG00000005201	SF3A1	62	90.000	ENSATEG00000021201	sf3a1	58	90.476	Anabas_testudineus
ENSCHOG00000005201	SF3A1	64	95.283	ENSAPLG00000009057	SF3A1	60	95.283	Anas_platyrhynchos
ENSCHOG00000005201	SF3A1	68	93.578	ENSACAG00000009415	SF3A1	57	93.258	Anolis_carolinensis
ENSCHOG00000005201	SF3A1	69	100.000	ENSANAG00000032045	SF3A1	61	100.000	Aotus_nancymaae
ENSCHOG00000005201	SF3A1	63	88.971	ENSACLG00000012622	sf3a1	59	88.603	Astatotilapia_calliptera
ENSCHOG00000005201	SF3A1	63	88.433	ENSAMXG00000005382	sf3a1	59	89.811	Astyanax_mexicanus
ENSCHOG00000005201	SF3A1	69	99.083	ENSBTAG00000003390	SF3A1	61	99.083	Bos_taurus
ENSCHOG00000005201	SF3A1	64	50.746	WBGene00004188	prp-21	61	50.373	Caenorhabditis_elegans
ENSCHOG00000005201	SF3A1	69	100.000	ENSCJAG00000010370	SF3A1	61	100.000	Callithrix_jacchus
ENSCHOG00000005201	SF3A1	69	99.262	ENSCAFG00000012559	SF3A1	61	99.262	Canis_familiaris
ENSCHOG00000005201	SF3A1	69	99.262	ENSCAFG00020000838	SF3A1	61	99.262	Canis_lupus_dingo
ENSCHOG00000005201	SF3A1	69	99.083	ENSCHIG00000018642	SF3A1	61	99.083	Capra_hircus
ENSCHOG00000005201	SF3A1	69	99.083	ENSTSYG00000004739	SF3A1	61	99.083	Carlito_syrichta
ENSCHOG00000005201	SF3A1	63	98.039	ENSCAPG00000015414	SF3A1	62	98.039	Cavia_aperea
ENSCHOG00000005201	SF3A1	69	99.083	ENSCPOG00000014589	SF3A1	61	99.083	Cavia_porcellus
ENSCHOG00000005201	SF3A1	69	100.000	ENSCCAG00000032006	SF3A1	61	100.000	Cebus_capucinus
ENSCHOG00000005201	SF3A1	69	100.000	ENSCATG00000029241	SF3A1	61	100.000	Cercocebus_atys
ENSCHOG00000005201	SF3A1	69	98.165	ENSCLAG00000006508	SF3A1	61	98.165	Chinchilla_lanigera
ENSCHOG00000005201	SF3A1	69	100.000	ENSCSAG00000009470	SF3A1	61	100.000	Chlorocebus_sabaeus
ENSCHOG00000005201	SF3A1	64	96.190	ENSCPBG00000007595	SF3A1	58	96.190	Chrysemys_picta_bellii
ENSCHOG00000005201	SF3A1	60	66.939	ENSCING00000008526	-	54	66.794	Ciona_intestinalis
ENSCHOG00000005201	SF3A1	62	67.557	ENSCSAVG00000005608	-	62	65.649	Ciona_savignyi
ENSCHOG00000005201	SF3A1	69	100.000	ENSCANG00000033564	SF3A1	61	100.000	Colobus_angolensis_palliatus
ENSCHOG00000005201	SF3A1	69	98.165	ENSCGRG00001008933	Sf3a1	61	98.165	Cricetulus_griseus_chok1gshd
ENSCHOG00000005201	SF3A1	69	98.165	ENSCGRG00000006127	Sf3a1	61	98.165	Cricetulus_griseus_crigri
ENSCHOG00000005201	SF3A1	65	87.500	ENSCSEG00000010792	sf3a1	58	87.547	Cynoglossus_semilaevis
ENSCHOG00000005201	SF3A1	65	89.057	ENSCVAG00000004560	sf3a1	58	89.057	Cyprinodon_variegatus
ENSCHOG00000005201	SF3A1	62	90.494	ENSDARG00000041887	sf3a1	88	86.538	Danio_rerio
ENSCHOG00000005201	SF3A1	69	100.000	ENSDNOG00000010629	SF3A1	61	100.000	Dasypus_novemcinctus
ENSCHOG00000005201	SF3A1	69	99.083	ENSDORG00000005613	Sf3a1	61	99.083	Dipodomys_ordii
ENSCHOG00000005201	SF3A1	61	69.355	FBgn0266917	Sf3a1	55	67.033	Drosophila_melanogaster
ENSCHOG00000005201	SF3A1	59	100.000	ENSETEG00000017194	SF3A1	56	100.000	Echinops_telfairi
ENSCHOG00000005201	SF3A1	66	79.259	ENSEBUG00000001285	sf3a1	55	82.143	Eptatretus_burgeri
ENSCHOG00000005201	SF3A1	69	99.083	ENSEASG00005010254	SF3A1	61	99.083	Equus_asinus_asinus
ENSCHOG00000005201	SF3A1	69	99.083	ENSECAG00000023962	SF3A1	61	99.083	Equus_caballus
ENSCHOG00000005201	SF3A1	56	98.095	ENSEEUG00000003159	SF3A1	56	98.095	Erinaceus_europaeus
ENSCHOG00000005201	SF3A1	64	90.840	ENSELUG00000022578	sf3a1	59	90.840	Esox_lucius
ENSCHOG00000005201	SF3A1	69	99.262	ENSFCAG00000011932	SF3A1	61	99.262	Felis_catus
ENSCHOG00000005201	SF3A1	64	97.143	ENSFALG00000006944	SF3A1	59	97.143	Ficedula_albicollis
ENSCHOG00000005201	SF3A1	69	99.083	ENSFDAG00000009560	SF3A1	61	99.083	Fukomys_damarensis
ENSCHOG00000005201	SF3A1	64	92.405	ENSFHEG00000010866	sf3a1	58	90.476	Fundulus_heteroclitus
ENSCHOG00000005201	SF3A1	64	87.786	ENSGMOG00000016024	sf3a1	58	88.550	Gadus_morhua
ENSCHOG00000005201	SF3A1	64	96.190	ENSGALG00000007937	SF3A1	58	96.190	Gallus_gallus
ENSCHOG00000005201	SF3A1	65	90.000	ENSGAFG00000009111	sf3a1	58	90.000	Gambusia_affinis
ENSCHOG00000005201	SF3A1	60	89.313	ENSGACG00000011893	sf3a1	57	87.405	Gasterosteus_aculeatus
ENSCHOG00000005201	SF3A1	64	96.190	ENSGAGG00000000762	SF3A1	60	96.190	Gopherus_agassizii
ENSCHOG00000005201	SF3A1	69	100.000	ENSGGOG00000012631	SF3A1	61	100.000	Gorilla_gorilla
ENSCHOG00000005201	SF3A1	63	88.971	ENSHBUG00000015795	sf3a1	59	88.603	Haplochromis_burtoni
ENSCHOG00000005201	SF3A1	69	99.083	ENSHGLG00000007907	SF3A1	61	99.083	Heterocephalus_glaber_female
ENSCHOG00000005201	SF3A1	69	99.083	ENSHGLG00100013799	SF3A1	61	99.083	Heterocephalus_glaber_male
ENSCHOG00000005201	SF3A1	65	87.342	ENSHCOG00000015423	sf3a1	59	85.714	Hippocampus_comes
ENSCHOG00000005201	SF3A1	64	88.636	ENSIPUG00000002470	sf3a1	59	89.015	Ictalurus_punctatus
ENSCHOG00000005201	SF3A1	69	99.083	ENSSTOG00000013892	SF3A1	61	99.083	Ictidomys_tridecemlineatus
ENSCHOG00000005201	SF3A1	69	99.083	ENSJJAG00000022566	Sf3a1	61	99.083	Jaculus_jaculus
ENSCHOG00000005201	SF3A1	64	89.811	ENSKMAG00000002400	sf3a1	58	89.811	Kryptolebias_marmoratus
ENSCHOG00000005201	SF3A1	62	91.250	ENSLBEG00000022974	sf3a1	58	91.667	Labrus_bergylta
ENSCHOG00000005201	SF3A1	65	94.382	ENSLACG00000003565	SF3A1	58	94.382	Latimeria_chalumnae
ENSCHOG00000005201	SF3A1	61	89.412	ENSLOCG00000008251	sf3a1	58	89.474	Lepisosteus_oculatus
ENSCHOG00000005201	SF3A1	69	100.000	ENSLAFG00000000448	SF3A1	61	100.000	Loxodonta_africana
ENSCHOG00000005201	SF3A1	66	66.667	ENSLAFG00000026032	-	57	66.667	Loxodonta_africana
ENSCHOG00000005201	SF3A1	69	100.000	ENSMFAG00000031979	SF3A1	61	100.000	Macaca_fascicularis
ENSCHOG00000005201	SF3A1	69	100.000	ENSMMUG00000005547	SF3A1	61	100.000	Macaca_mulatta
ENSCHOG00000005201	SF3A1	69	100.000	ENSMNEG00000037229	SF3A1	61	100.000	Macaca_nemestrina
ENSCHOG00000005201	SF3A1	69	100.000	ENSMLEG00000041908	SF3A1	61	100.000	Mandrillus_leucophaeus
ENSCHOG00000005201	SF3A1	61	90.943	ENSMAMG00000006460	sf3a1	60	90.943	Mastacembelus_armatus
ENSCHOG00000005201	SF3A1	63	88.971	ENSMZEG00005009633	sf3a1	59	88.603	Maylandia_zebra
ENSCHOG00000005201	SF3A1	64	96.190	ENSMGAG00000001330	SF3A1	60	96.190	Meleagris_gallopavo
ENSCHOG00000005201	SF3A1	61	98.095	ENSMAUG00000020317	Sf3a1	54	98.095	Mesocricetus_auratus
ENSCHOG00000005201	SF3A1	69	100.000	ENSMICG00000010038	SF3A1	61	100.000	Microcebus_murinus
ENSCHOG00000005201	SF3A1	69	98.165	ENSMOCG00000008438	Sf3a1	61	98.165	Microtus_ochrogaster
ENSCHOG00000005201	SF3A1	61	87.500	ENSMMOG00000015588	sf3a1	57	88.095	Mola_mola
ENSCHOG00000005201	SF3A1	69	98.155	ENSMODG00000009270	SF3A1	61	98.155	Monodelphis_domestica
ENSCHOG00000005201	SF3A1	64	91.139	ENSMALG00000000148	sf3a1	57	91.775	Monopterus_albus
ENSCHOG00000005201	SF3A1	69	98.165	MGP_CAROLIEiJ_G0016029	Sf3a1	61	98.165	Mus_caroli
ENSCHOG00000005201	SF3A1	69	98.165	ENSMUSG00000002129	Sf3a1	61	98.165	Mus_musculus
ENSCHOG00000005201	SF3A1	69	98.165	MGP_PahariEiJ_G0016862	Sf3a1	61	98.165	Mus_pahari
ENSCHOG00000005201	SF3A1	69	98.165	MGP_SPRETEiJ_G0016870	Sf3a1	61	98.165	Mus_spretus
ENSCHOG00000005201	SF3A1	69	99.262	ENSMPUG00000013144	SF3A1	61	99.262	Mustela_putorius_furo
ENSCHOG00000005201	SF3A1	69	99.083	ENSMLUG00000002139	SF3A1	61	99.083	Myotis_lucifugus
ENSCHOG00000005201	SF3A1	69	99.083	ENSNGAG00000016977	Sf3a1	61	99.083	Nannospalax_galili
ENSCHOG00000005201	SF3A1	61	91.829	ENSNBRG00000016642	sf3a1	57	91.440	Neolamprologus_brichardi
ENSCHOG00000005201	SF3A1	69	100.000	ENSNLEG00000003686	SF3A1	61	100.000	Nomascus_leucogenys
ENSCHOG00000005201	SF3A1	66	98.095	ENSMEUG00000008741	SF3A1	61	98.095	Notamacropus_eugenii
ENSCHOG00000005201	SF3A1	69	100.000	ENSOPRG00000016636	SF3A1	61	100.000	Ochotona_princeps
ENSCHOG00000005201	SF3A1	69	100.000	ENSODEG00000002571	SF3A1	61	100.000	Octodon_degus
ENSCHOG00000005201	SF3A1	63	88.971	ENSONIG00000010848	sf3a1	59	88.603	Oreochromis_niloticus
ENSCHOG00000005201	SF3A1	69	98.524	ENSOCUG00000007633	SF3A1	61	98.524	Oryctolagus_cuniculus
ENSCHOG00000005201	SF3A1	61	90.476	ENSORLG00000013050	sf3a1	61	90.476	Oryzias_latipes
ENSCHOG00000005201	SF3A1	61	90.476	ENSORLG00020003236	sf3a1	58	90.476	Oryzias_latipes_hni
ENSCHOG00000005201	SF3A1	62	90.476	ENSORLG00015017411	sf3a1	59	90.476	Oryzias_latipes_hsok
ENSCHOG00000005201	SF3A1	62	87.500	ENSOMEG00000013362	sf3a1	59	87.085	Oryzias_melastigma
ENSCHOG00000005201	SF3A1	69	99.083	ENSOGAG00000012931	SF3A1	61	99.083	Otolemur_garnettii
ENSCHOG00000005201	SF3A1	69	98.893	ENSOARG00000006849	SF3A1	61	98.893	Ovis_aries
ENSCHOG00000005201	SF3A1	69	100.000	ENSPPAG00000041790	SF3A1	61	100.000	Pan_paniscus
ENSCHOG00000005201	SF3A1	69	99.262	ENSPPRG00000004391	SF3A1	61	99.262	Panthera_pardus
ENSCHOG00000005201	SF3A1	69	99.262	ENSPTIG00000000844	SF3A1	63	99.262	Panthera_tigris_altaica
ENSCHOG00000005201	SF3A1	69	100.000	ENSPTRG00000014240	SF3A1	61	100.000	Pan_troglodytes
ENSCHOG00000005201	SF3A1	69	100.000	ENSPANG00000020772	SF3A1	61	100.000	Papio_anubis
ENSCHOG00000005201	SF3A1	62	94.286	ENSPSIG00000012803	SF3A1	67	94.286	Pelodiscus_sinensis
ENSCHOG00000005201	SF3A1	68	90.076	ENSPMGG00000023096	sf3a1	60	88.931	Periophthalmus_magnuspinnatus
ENSCHOG00000005201	SF3A1	69	98.165	ENSPEMG00000009494	Sf3a1	61	98.165	Peromyscus_maniculatus_bairdii
ENSCHOG00000005201	SF3A1	69	98.507	ENSPCIG00000022692	SF3A1	61	98.507	Phascolarctos_cinereus
ENSCHOG00000005201	SF3A1	61	90.000	ENSPFOG00000016768	sf3a1	54	90.000	Poecilia_formosa
ENSCHOG00000005201	SF3A1	65	90.458	ENSPLAG00000017268	sf3a1	58	90.458	Poecilia_latipinna
ENSCHOG00000005201	SF3A1	51	93.210	ENSPMEG00000019811	sf3a1	53	93.210	Poecilia_mexicana
ENSCHOG00000005201	SF3A1	65	90.458	ENSPREG00000010347	sf3a1	58	90.458	Poecilia_reticulata
ENSCHOG00000005201	SF3A1	69	100.000	ENSPPYG00000011707	SF3A1	61	100.000	Pongo_abelii
ENSCHOG00000005201	SF3A1	69	100.000	ENSPCOG00000026630	SF3A1	61	100.000	Propithecus_coquereli
ENSCHOG00000005201	SF3A1	65	99.083	ENSPVAG00000017719	SF3A1	58	99.083	Pteropus_vampyrus
ENSCHOG00000005201	SF3A1	63	88.971	ENSPNYG00000018706	sf3a1	59	88.603	Pundamilia_nyererei
ENSCHOG00000005201	SF3A1	65	90.530	ENSPNAG00000003721	sf3a1	59	89.773	Pygocentrus_nattereri
ENSCHOG00000005201	SF3A1	69	98.524	ENSRNOG00000005218	Sf3a1	61	98.524	Rattus_norvegicus
ENSCHOG00000005201	SF3A1	69	100.000	ENSRBIG00000032167	SF3A1	61	100.000	Rhinopithecus_bieti
ENSCHOG00000005201	SF3A1	69	100.000	ENSRROG00000044908	SF3A1	61	100.000	Rhinopithecus_roxellana
ENSCHOG00000005201	SF3A1	66	100.000	ENSSBOG00000021960	SF3A1	60	99.432	Saimiri_boliviensis_boliviensis
ENSCHOG00000005201	SF3A1	69	98.134	ENSSHAG00000003666	SF3A1	61	98.134	Sarcophilus_harrisii
ENSCHOG00000005201	SF3A1	67	89.011	ENSSFOG00015004579	sf3a1	59	89.011	Scleropages_formosus
ENSCHOG00000005201	SF3A1	60	90.840	ENSSMAG00000004275	sf3a1	58	89.695	Scophthalmus_maximus
ENSCHOG00000005201	SF3A1	61	89.338	ENSSDUG00000022219	sf3a1	59	89.286	Seriola_dumerili
ENSCHOG00000005201	SF3A1	61	89.338	ENSSLDG00000012642	sf3a1	59	89.286	Seriola_lalandi_dorsalis
ENSCHOG00000005201	SF3A1	66	100.000	ENSSARG00000005960	SF3A1	60	100.000	Sorex_araneus
ENSCHOG00000005201	SF3A1	65	96.190	ENSSPUG00000018863	SF3A1	58	96.190	Sphenodon_punctatus
ENSCHOG00000005201	SF3A1	60	91.221	ENSSPAG00000011856	sf3a1	58	90.476	Stegastes_partitus
ENSCHOG00000005201	SF3A1	69	99.262	ENSSSCG00000010002	SF3A1	61	99.262	Sus_scrofa
ENSCHOG00000005201	SF3A1	64	97.143	ENSTGUG00000010547	SF3A1	60	97.143	Taeniopygia_guttata
ENSCHOG00000005201	SF3A1	64	91.985	ENSTRUG00000006118	sf3a1	57	90.076	Takifugu_rubripes
ENSCHOG00000005201	SF3A1	66	98.095	ENSTBEG00000012771	SF3A1	59	98.095	Tupaia_belangeri
ENSCHOG00000005201	SF3A1	69	99.083	ENSTTRG00000001535	SF3A1	61	99.083	Tursiops_truncatus
ENSCHOG00000005201	SF3A1	69	99.262	ENSUAMG00000006750	SF3A1	61	99.262	Ursus_americanus
ENSCHOG00000005201	SF3A1	69	99.262	ENSUMAG00000016665	SF3A1	62	99.259	Ursus_maritimus
ENSCHOG00000005201	SF3A1	69	99.262	ENSVVUG00000003075	SF3A1	61	99.262	Vulpes_vulpes
ENSCHOG00000005201	SF3A1	65	91.429	ENSXETG00000016144	sf3a1	89	89.474	Xenopus_tropicalis
ENSCHOG00000005201	SF3A1	64	90.476	ENSXCOG00000015653	sf3a1	57	90.476	Xiphophorus_couchianus
ENSCHOG00000005201	SF3A1	64	91.139	ENSXMAG00000002753	sf3a1	58	90.476	Xiphophorus_maculatus