EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCHOG00000005335 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Choloepus_hoffmanni
Status
putative
Strand
Minus strand
Length
2370 bases
Position
chrscaffold_133726:17-2386
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCHOP00000004729LSMPF01423.226e-1611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCHOT00000005351LSM5-201228-ENSCHOP0000000472976 (aa)-UPI0001F9F4D4
Gene Model
Click here to download ENSCHOG00000005335's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000005335's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCHOG00000005335LSM599100.000ENSG00000106355LSM582100.000Homo_sapiens
ENSCHOG00000005335LSM59996.000ENSAPOG00000011743LSM58496.000Acanthochromis_polyacanthus
ENSCHOG00000005335LSM59996.000ENSAPOG00000020779LSM58896.000Acanthochromis_polyacanthus
ENSCHOG00000005335LSM599100.000ENSAMEG00000006700LSM582100.000Ailuropoda_melanoleuca
ENSCHOG00000005335LSM59350.704ENSACIG00000019185lsm57050.704Amphilophus_citrinellus
ENSCHOG00000005335LSM59996.000ENSAOCG00000001636lsm58296.000Amphiprion_ocellaris
ENSCHOG00000005335LSM56197.826ENSAPEG00000008201lsm57497.826Amphiprion_percula
ENSCHOG00000005335LSM59996.000ENSAPEG00000008151lsm58296.000Amphiprion_percula
ENSCHOG00000005335LSM59994.667ENSATEG00000020470lsm55694.667Anabas_testudineus
ENSCHOG00000005335LSM579100.000ENSAPLG00000008171LSM581100.000Anas_platyrhynchos
ENSCHOG00000005335LSM574100.000ENSACAG00000009530LSM593100.000Anolis_carolinensis
ENSCHOG00000005335LSM59998.667ENSANAG00000034409-8298.667Aotus_nancymaae
ENSCHOG00000005335LSM59977.333ENSANAG00000037758-8077.333Aotus_nancymaae
ENSCHOG00000005335LSM59797.297ENSANAG00000024192-7797.297Aotus_nancymaae
ENSCHOG00000005335LSM59395.775ENSACLG00000012891lsm58195.775Astatotilapia_calliptera
ENSCHOG00000005335LSM59979.487ENSAMXG00000035543lsm58379.487Astyanax_mexicanus
ENSCHOG00000005335LSM599100.000ENSBTAG00000002332LSM582100.000Bos_taurus
ENSCHOG00000005335LSM56381.250ENSBTAG00000052014-6381.250Bos_taurus
ENSCHOG00000005335LSM59970.667WBGene00003079lsm-58270.667Caenorhabditis_elegans
ENSCHOG00000005335LSM59785.135ENSCJAG00000005678-8385.135Callithrix_jacchus
ENSCHOG00000005335LSM599100.000ENSCJAG00000047379LSM58192.308Callithrix_jacchus
ENSCHOG00000005335LSM56694.000ENSCAFG00000030781-5894.000Canis_familiaris
ENSCHOG00000005335LSM599100.000ENSCAFG00000019261-82100.000Canis_familiaris
ENSCHOG00000005335LSM599100.000ENSCAFG00020004946LSM582100.000Canis_lupus_dingo
ENSCHOG00000005335LSM59997.333ENSCHIG00000004079-8297.333Capra_hircus
ENSCHOG00000005335LSM59775.676ENSCHIG00000021428-8576.000Capra_hircus
ENSCHOG00000005335LSM599100.000ENSCHIG00000024539LSM582100.000Capra_hircus
ENSCHOG00000005335LSM59985.333ENSTSYG00000028728-8185.333Carlito_syrichta
ENSCHOG00000005335LSM59978.667ENSTSYG00000026530-7478.667Carlito_syrichta
ENSCHOG00000005335LSM599100.000ENSTSYG00000006449-82100.000Carlito_syrichta
ENSCHOG00000005335LSM57192.593ENSTSYG00000036637-7492.593Carlito_syrichta
ENSCHOG00000005335LSM578100.000ENSCAPG00000006980LSM579100.000Cavia_aperea
ENSCHOG00000005335LSM599100.000ENSCPOG00000036386LSM582100.000Cavia_porcellus
ENSCHOG00000005335LSM59997.333ENSCCAG00000032123-8297.333Cebus_capucinus
ENSCHOG00000005335LSM59998.667ENSCCAG00000000821-8298.667Cebus_capucinus
ENSCHOG00000005335LSM510064.474ENSCCAG00000037334-8164.474Cebus_capucinus
ENSCHOG00000005335LSM599100.000ENSCCAG00000037808-82100.000Cebus_capucinus
ENSCHOG00000005335LSM59977.333ENSCCAG00000032792-8077.333Cebus_capucinus
ENSCHOG00000005335LSM599100.000ENSCATG00000040218LSM582100.000Cercocebus_atys
ENSCHOG00000005335LSM59787.838ENSCATG00000014790-9598.182Cercocebus_atys
ENSCHOG00000005335LSM59980.000ENSCLAG00000005062-7480.000Chinchilla_lanigera
ENSCHOG00000005335LSM599100.000ENSCLAG00000000202LSM582100.000Chinchilla_lanigera
ENSCHOG00000005335LSM599100.000ENSCPBG00000013685LSM582100.000Chrysemys_picta_bellii
ENSCHOG00000005335LSM59687.671ENSCING00000020625-8187.671Ciona_intestinalis
ENSCHOG00000005335LSM59287.143ENSCSAVG00000001439-8087.143Ciona_savignyi
ENSCHOG00000005335LSM599100.000ENSCANG00000039909LSM582100.000Colobus_angolensis_palliatus
ENSCHOG00000005335LSM599100.000ENSCGRG00001015461Lsm582100.000Cricetulus_griseus_chok1gshd
ENSCHOG00000005335LSM578100.000ENSCGRG00000007677Lsm579100.000Cricetulus_griseus_crigri
ENSCHOG00000005335LSM59952.000ENSCSEG00000015286lsm57352.000Cynoglossus_semilaevis
ENSCHOG00000005335LSM59994.667ENSCVAG00000004262lsm58294.667Cyprinodon_variegatus
ENSCHOG00000005335LSM59994.667ENSDARG00000071573lsm58294.667Danio_rerio
ENSCHOG00000005335LSM59988.000ENSDNOG00000049495-8288.000Dasypus_novemcinctus
ENSCHOG00000005335LSM599100.000ENSDNOG00000034958LSM584100.000Dasypus_novemcinctus
ENSCHOG00000005335LSM599100.000ENSDORG00000009422Lsm582100.000Dipodomys_ordii
ENSCHOG00000005335LSM59778.378FBgn0035675CG66108178.378Drosophila_melanogaster
ENSCHOG00000005335LSM57677.586ENSETEG00000016074-7377.586Echinops_telfairi
ENSCHOG00000005335LSM59968.000ENSETEG00000000777-8568.000Echinops_telfairi
ENSCHOG00000005335LSM599100.000ENSETEG00000018068LSM582100.000Echinops_telfairi
ENSCHOG00000005335LSM59974.667ENSETEG00000010651-8074.667Echinops_telfairi
ENSCHOG00000005335LSM59771.622ENSETEG00000001469-7871.622Echinops_telfairi
ENSCHOG00000005335LSM59992.000ENSEBUG00000008540lsm58292.000Eptatretus_burgeri
ENSCHOG00000005335LSM599100.000ENSEASG00005003500LSM582100.000Equus_asinus_asinus
ENSCHOG00000005335LSM59982.667ENSECAG00000018445LSM58082.667Equus_caballus
ENSCHOG00000005335LSM55592.857ENSEEUG00000004102LSM57092.857Erinaceus_europaeus
ENSCHOG00000005335LSM59994.667ENSELUG00000007792lsm58294.667Esox_lucius
ENSCHOG00000005335LSM599100.000ENSFCAG00000000230LSM582100.000Felis_catus
ENSCHOG00000005335LSM579100.000ENSFALG00000001892LSM572100.000Ficedula_albicollis
ENSCHOG00000005335LSM59965.333ENSFDAG00000008685-7965.333Fukomys_damarensis
ENSCHOG00000005335LSM599100.000ENSFDAG00000008767LSM582100.000Fukomys_damarensis
ENSCHOG00000005335LSM59772.973ENSFHEG00000004011lsm57872.973Fundulus_heteroclitus
ENSCHOG00000005335LSM59994.667ENSGMOG00000018235lsm58394.667Gadus_morhua
ENSCHOG00000005335LSM59998.667ENSGALG00000041625LSM58298.667Gallus_gallus
ENSCHOG00000005335LSM56197.826ENSGAFG00000016824lsm57497.826Gambusia_affinis
ENSCHOG00000005335LSM59996.000ENSGACG00000005528lsm58296.000Gasterosteus_aculeatus
ENSCHOG00000005335LSM599100.000ENSGAGG00000015593LSM582100.000Gopherus_agassizii
ENSCHOG00000005335LSM599100.000ENSGGOG00000043469LSM582100.000Gorilla_gorilla
ENSCHOG00000005335LSM59395.775ENSHBUG00000013773lsm58195.775Haplochromis_burtoni
ENSCHOG00000005335LSM599100.000ENSHGLG00000011765LSM582100.000Heterocephalus_glaber_female
ENSCHOG00000005335LSM59996.000ENSHGLG00100015610LSM58296.000Heterocephalus_glaber_male
ENSCHOG00000005335LSM59952.000ENSHCOG00000008288lsm57352.000Hippocampus_comes
ENSCHOG00000005335LSM59993.333ENSIPUG00000021095LSM58293.333Ictalurus_punctatus
ENSCHOG00000005335LSM58884.058ENSSTOG00000033886-7884.058Ictidomys_tridecemlineatus
ENSCHOG00000005335LSM599100.000ENSSTOG00000012662LSM582100.000Ictidomys_tridecemlineatus
ENSCHOG00000005335LSM59997.333ENSJJAG00000012145-8297.333Jaculus_jaculus
ENSCHOG00000005335LSM59990.667ENSJJAG00000004475-9590.667Jaculus_jaculus
ENSCHOG00000005335LSM59969.333ENSJJAG00000016144-7269.333Jaculus_jaculus
ENSCHOG00000005335LSM59994.667ENSKMAG00000021861lsm58294.667Kryptolebias_marmoratus
ENSCHOG00000005335LSM57480.357ENSLBEG00000017379lsm59280.357Labrus_bergylta
ENSCHOG00000005335LSM59994.667ENSLBEG00000009235LSM55994.667Labrus_bergylta
ENSCHOG00000005335LSM59997.333ENSLACG00000022448LSM58297.333Latimeria_chalumnae
ENSCHOG00000005335LSM59994.667ENSLOCG00000012903lsm58294.667Lepisosteus_oculatus
ENSCHOG00000005335LSM59969.333ENSLAFG00000027938-8069.333Loxodonta_africana
ENSCHOG00000005335LSM599100.000ENSLAFG00000029579LSM582100.000Loxodonta_africana
ENSCHOG00000005335LSM59996.000ENSMFAG00000030152-8296.000Macaca_fascicularis
ENSCHOG00000005335LSM56397.917ENSMFAG00000031187-8197.917Macaca_fascicularis
ENSCHOG00000005335LSM599100.000ENSMFAG00000038508LSM582100.000Macaca_fascicularis
ENSCHOG00000005335LSM59787.838ENSMMUG00000039822-8087.838Macaca_mulatta
ENSCHOG00000005335LSM59996.000ENSMMUG00000030131-8296.000Macaca_mulatta
ENSCHOG00000005335LSM56892.308ENSMMUG00000045129-8192.308Macaca_mulatta
ENSCHOG00000005335LSM599100.000ENSMNEG00000015331LSM582100.000Macaca_nemestrina
ENSCHOG00000005335LSM59996.000ENSMNEG00000037935-8296.000Macaca_nemestrina
ENSCHOG00000005335LSM599100.000ENSMLEG00000024945LSM582100.000Mandrillus_leucophaeus
ENSCHOG00000005335LSM59687.671ENSMLEG00000034037-8388.000Mandrillus_leucophaeus
ENSCHOG00000005335LSM59992.000ENSMAMG00000012869lsm58292.000Mastacembelus_armatus
ENSCHOG00000005335LSM59395.775ENSMZEG00005019554lsm58195.775Maylandia_zebra
ENSCHOG00000005335LSM59998.667ENSMGAG00000012117LSM58298.667Meleagris_gallopavo
ENSCHOG00000005335LSM59998.667ENSMAUG00000008132-8298.667Mesocricetus_auratus
ENSCHOG00000005335LSM599100.000ENSMAUG00000012222Lsm582100.000Mesocricetus_auratus
ENSCHOG00000005335LSM599100.000ENSMICG00000005353LSM582100.000Microcebus_murinus
ENSCHOG00000005335LSM59772.973ENSMICG00000033928-7572.973Microcebus_murinus
ENSCHOG00000005335LSM599100.000ENSMOCG00000012018Lsm582100.000Microtus_ochrogaster
ENSCHOG00000005335LSM57998.333ENSMMOG00000004026lsm56998.333Mola_mola
ENSCHOG00000005335LSM561100.000ENSMODG00000013274-74100.000Monodelphis_domestica
ENSCHOG00000005335LSM56195.652ENSMALG00000010343lsm57495.652Monopterus_albus
ENSCHOG00000005335LSM599100.000MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSCHOG00000005335LSM599100.000ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSCHOG00000005335LSM599100.000MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSCHOG00000005335LSM599100.000MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSCHOG00000005335LSM599100.000ENSMLUG00000017028LSM582100.000Myotis_lucifugus
ENSCHOG00000005335LSM599100.000ENSNGAG00000024142Lsm582100.000Nannospalax_galili
ENSCHOG00000005335LSM59775.676ENSNGAG00000022569-7775.676Nannospalax_galili
ENSCHOG00000005335LSM59984.416ENSNGAG00000017707-8284.416Nannospalax_galili
ENSCHOG00000005335LSM55497.561ENSNBRG00000011386lsm55597.561Neolamprologus_brichardi
ENSCHOG00000005335LSM55988.889ENSNBRG00000009964LSM59688.889Neolamprologus_brichardi
ENSCHOG00000005335LSM599100.000ENSNLEG00000015268LSM582100.000Nomascus_leucogenys
ENSCHOG00000005335LSM578100.000ENSOPRG00000002443LSM579100.000Ochotona_princeps
ENSCHOG00000005335LSM599100.000ENSODEG00000008258-82100.000Octodon_degus
ENSCHOG00000005335LSM599100.000ENSODEG00000019072-82100.000Octodon_degus
ENSCHOG00000005335LSM58357.143ENSOANG00000014540-8457.143Ornithorhynchus_anatinus
ENSCHOG00000005335LSM599100.000ENSOCUG00000029043LSM582100.000Oryctolagus_cuniculus
ENSCHOG00000005335LSM59994.667ENSORLG00020003019lsm57494.667Oryzias_latipes_hni
ENSCHOG00000005335LSM59994.667ENSORLG00015003338lsm58294.667Oryzias_latipes_hsok
ENSCHOG00000005335LSM59993.333ENSOMEG00000001078lsm58293.333Oryzias_melastigma
ENSCHOG00000005335LSM599100.000ENSOGAG00000013892LSM582100.000Otolemur_garnettii
ENSCHOG00000005335LSM599100.000ENSOARG00000006944LSM582100.000Ovis_aries
ENSCHOG00000005335LSM599100.000ENSPPAG00000003697-82100.000Pan_paniscus
ENSCHOG00000005335LSM599100.000ENSPPRG00000002550LSM582100.000Panthera_pardus
ENSCHOG00000005335LSM599100.000ENSPTIG00000015604LSM582100.000Panthera_tigris_altaica
ENSCHOG00000005335LSM599100.000ENSPTRG00000019057LSM582100.000Pan_troglodytes
ENSCHOG00000005335LSM59980.000ENSPTRG00000049488-8282.667Pan_troglodytes
ENSCHOG00000005335LSM599100.000ENSPANG00000032179-82100.000Papio_anubis
ENSCHOG00000005335LSM59994.667ENSPANG00000033477-8294.667Papio_anubis
ENSCHOG00000005335LSM59787.838ENSPANG00000032538-8087.838Papio_anubis
ENSCHOG00000005335LSM59994.667ENSPKIG00000011910lsm58294.667Paramormyrops_kingsleyae
ENSCHOG00000005335LSM579100.000ENSPSIG00000014796LSM581100.000Pelodiscus_sinensis
ENSCHOG00000005335LSM56197.826ENSPMGG00000011699lsm57497.826Periophthalmus_magnuspinnatus
ENSCHOG00000005335LSM562100.000ENSPEMG00000019994-80100.000Peromyscus_maniculatus_bairdii
ENSCHOG00000005335LSM59970.667ENSPEMG00000022375-8070.667Peromyscus_maniculatus_bairdii
ENSCHOG00000005335LSM59994.667ENSPFOG00000001433lsm58294.667Poecilia_formosa
ENSCHOG00000005335LSM59994.667ENSPLAG00000009665lsm58294.667Poecilia_latipinna
ENSCHOG00000005335LSM59994.667ENSPMEG00000022265lsm58294.667Poecilia_mexicana
ENSCHOG00000005335LSM56197.826ENSPREG00000022452lsm57497.826Poecilia_reticulata
ENSCHOG00000005335LSM59996.000ENSPPYG00000017661LSM58296.000Pongo_abelii
ENSCHOG00000005335LSM599100.000ENSPCAG00000013740LSM593100.000Procavia_capensis
ENSCHOG00000005335LSM599100.000ENSPVAG00000009786LSM582100.000Pteropus_vampyrus
ENSCHOG00000005335LSM59395.775ENSPNYG00000022236lsm58195.775Pundamilia_nyererei
ENSCHOG00000005335LSM59993.333ENSPNAG00000001887lsm58293.333Pygocentrus_nattereri
ENSCHOG00000005335LSM599100.000ENSRNOG00000042126Lsm582100.000Rattus_norvegicus
ENSCHOG00000005335LSM59994.737ENSRNOG00000027305AABR07065089.18394.737Rattus_norvegicus
ENSCHOG00000005335LSM599100.000ENSRBIG00000030340-82100.000Rhinopithecus_bieti
ENSCHOG00000005335LSM599100.000ENSRBIG00000030714-82100.000Rhinopithecus_bieti
ENSCHOG00000005335LSM59998.667ENSRBIG00000024431-8298.667Rhinopithecus_bieti
ENSCHOG00000005335LSM599100.000ENSRBIG00000027803-82100.000Rhinopithecus_bieti
ENSCHOG00000005335LSM599100.000ENSRROG00000042782-82100.000Rhinopithecus_roxellana
ENSCHOG00000005335LSM599100.000ENSRROG00000004655-82100.000Rhinopithecus_roxellana
ENSCHOG00000005335LSM599100.000ENSRROG00000023884-82100.000Rhinopithecus_roxellana
ENSCHOG00000005335LSM56853.846YER146W-5653.846Saccharomyces_cerevisiae
ENSCHOG00000005335LSM59998.667ENSSBOG00000019124-8298.667Saimiri_boliviensis_boliviensis
ENSCHOG00000005335LSM599100.000ENSSBOG00000012312LSM582100.000Saimiri_boliviensis_boliviensis
ENSCHOG00000005335LSM59973.333ENSSBOG00000034794-7973.333Saimiri_boliviensis_boliviensis
ENSCHOG00000005335LSM59994.667ENSSFOG00015010099lsm58294.667Scleropages_formosus
ENSCHOG00000005335LSM59953.333ENSSMAG00000007895lsm57353.333Scophthalmus_maximus
ENSCHOG00000005335LSM56197.826ENSSDUG00000010762lsm57497.826Seriola_dumerili
ENSCHOG00000005335LSM58780.303ENSSLDG00000008014-7980.303Seriola_lalandi_dorsalis
ENSCHOG00000005335LSM59994.667ENSSLDG00000025242lsm58294.667Seriola_lalandi_dorsalis
ENSCHOG00000005335LSM57498.214ENSSARG00000003330LSM56298.214Sorex_araneus
ENSCHOG00000005335LSM59997.333ENSSPUG00000002690LSM58297.333Sphenodon_punctatus
ENSCHOG00000005335LSM59953.333ENSSPAG00000005435lsm57353.333Stegastes_partitus
ENSCHOG00000005335LSM59188.406ENSSSCG00000029661-9688.406Sus_scrofa
ENSCHOG00000005335LSM599100.000ENSSSCG00000026064-82100.000Sus_scrofa
ENSCHOG00000005335LSM59996.000ENSTGUG00000017539LSM58296.000Taeniopygia_guttata
ENSCHOG00000005335LSM59388.158ENSTRUG00000017749lsm55988.158Takifugu_rubripes
ENSCHOG00000005335LSM59395.775ENSTNIG00000008695lsm58195.775Tetraodon_nigroviridis
ENSCHOG00000005335LSM599100.000ENSTBEG00000004876LSM582100.000Tupaia_belangeri
ENSCHOG00000005335LSM599100.000ENSTTRG00000004237LSM582100.000Tursiops_truncatus
ENSCHOG00000005335LSM56892.308ENSUAMG00000009786LSM56892.308Ursus_americanus
ENSCHOG00000005335LSM599100.000ENSUMAG00000002625LSM554100.000Ursus_maritimus
ENSCHOG00000005335LSM599100.000ENSVPAG00000009985LSM582100.000Vicugna_pacos
ENSCHOG00000005335LSM599100.000ENSVVUG00000021311LSM582100.000Vulpes_vulpes
ENSCHOG00000005335LSM59996.000ENSXETG00000026465lsm59196.000Xenopus_tropicalis
ENSCHOG00000005335LSM56197.826ENSXCOG00000015348lsm57497.826Xiphophorus_couchianus
ENSCHOG00000005335LSM59994.667ENSXMAG00000029988lsm58294.667Xiphophorus_maculatus

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