EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000006030 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Minus strand
Length: 9999 bases
Position: chrGeneScaffold_6611:2707-12705
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000005322	LSM	PF01423.22	8.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000006040	LSM1-201	402	-	ENSCHOP00000005322	133 (aa)	-	UPI0001F9F338

Gene Model

Click here to download ENSCHOG00000006030's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000006030's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000006030	LSM1	100	99.248	ENSG00000175324	LSM1	100	99.248	Homo_sapiens
ENSCHOG00000006030	LSM1	100	84.962	ENSAPOG00000010833	lsm1	100	84.962	Acanthochromis_polyacanthus
ENSCHOG00000006030	LSM1	100	99.248	ENSAMEG00000011141	LSM1	100	99.248	Ailuropoda_melanoleuca
ENSCHOG00000006030	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSCHOG00000006030	LSM1	100	84.962	ENSAOCG00000017997	-	100	84.962	Amphiprion_ocellaris
ENSCHOG00000006030	LSM1	100	84.962	ENSAOCG00000017096	lsm1	100	84.962	Amphiprion_ocellaris
ENSCHOG00000006030	LSM1	100	84.962	ENSAPEG00000011669	lsm1	100	84.962	Amphiprion_percula
ENSCHOG00000006030	LSM1	100	83.459	ENSATEG00000022266	lsm1	100	83.459	Anabas_testudineus
ENSCHOG00000006030	LSM1	100	99.248	ENSANAG00000027785	LSM1	100	99.248	Aotus_nancymaae
ENSCHOG00000006030	LSM1	100	83.459	ENSACLG00000011400	lsm1	100	83.459	Astatotilapia_calliptera
ENSCHOG00000006030	LSM1	100	85.714	ENSAMXG00000005441	lsm1	100	85.714	Astyanax_mexicanus
ENSCHOG00000006030	LSM1	100	98.496	ENSBTAG00000001612	LSM1	100	98.496	Bos_taurus
ENSCHOG00000006030	LSM1	70	58.065	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSCHOG00000006030	LSM1	100	98.496	ENSCJAG00000048015	LSM1	100	98.496	Callithrix_jacchus
ENSCHOG00000006030	LSM1	100	99.248	ENSCAFG00000006113	LSM1	100	99.248	Canis_familiaris
ENSCHOG00000006030	LSM1	100	99.248	ENSCAFG00020001822	LSM1	100	99.248	Canis_lupus_dingo
ENSCHOG00000006030	LSM1	100	99.248	ENSCHIG00000013194	LSM1	100	99.248	Capra_hircus
ENSCHOG00000006030	LSM1	100	99.248	ENSTSYG00000010394	LSM1	100	99.248	Carlito_syrichta
ENSCHOG00000006030	LSM1	100	99.248	ENSCPOG00000032671	LSM1	100	99.248	Cavia_porcellus
ENSCHOG00000006030	LSM1	100	99.248	ENSCCAG00000037171	LSM1	100	99.248	Cebus_capucinus
ENSCHOG00000006030	LSM1	100	99.248	ENSCATG00000020377	LSM1	100	99.248	Cercocebus_atys
ENSCHOG00000006030	LSM1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
ENSCHOG00000006030	LSM1	100	99.248	ENSCSAG00000015485	LSM1	100	99.248	Chlorocebus_sabaeus
ENSCHOG00000006030	LSM1	95	88.189	ENSCPBG00000006569	LSM1	86	88.189	Chrysemys_picta_bellii
ENSCHOG00000006030	LSM1	98	67.424	ENSCING00000013536	-	100	67.424	Ciona_intestinalis
ENSCHOG00000006030	LSM1	100	99.248	ENSCANG00000019173	LSM1	100	99.248	Colobus_angolensis_palliatus
ENSCHOG00000006030	LSM1	80	81.982	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSCHOG00000006030	LSM1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
ENSCHOG00000006030	LSM1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
ENSCHOG00000006030	LSM1	80	81.982	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSCHOG00000006030	LSM1	100	83.459	ENSCSEG00000008319	lsm1	92	83.459	Cynoglossus_semilaevis
ENSCHOG00000006030	LSM1	100	84.211	ENSCSEG00000010570	lsm1	92	84.211	Cynoglossus_semilaevis
ENSCHOG00000006030	LSM1	100	82.707	ENSCVAG00000003871	lsm1	100	82.707	Cyprinodon_variegatus
ENSCHOG00000006030	LSM1	100	84.962	ENSDARG00000043177	lsm1	100	84.962	Danio_rerio
ENSCHOG00000006030	LSM1	89	79.832	ENSDNOG00000046620	-	100	79.832	Dasypus_novemcinctus
ENSCHOG00000006030	LSM1	100	93.233	ENSDNOG00000030989	-	100	93.233	Dasypus_novemcinctus
ENSCHOG00000006030	LSM1	100	98.496	ENSDNOG00000032911	-	100	98.496	Dasypus_novemcinctus
ENSCHOG00000006030	LSM1	100	99.248	ENSDNOG00000046387	-	100	99.248	Dasypus_novemcinctus
ENSCHOG00000006030	LSM1	100	99.248	ENSDORG00000028172	Lsm1	100	99.248	Dipodomys_ordii
ENSCHOG00000006030	LSM1	93	64.516	FBgn0261067	LSm1	91	64.516	Drosophila_melanogaster
ENSCHOG00000006030	LSM1	100	98.496	ENSEASG00005016677	LSM1	100	98.496	Equus_asinus_asinus
ENSCHOG00000006030	LSM1	100	98.496	ENSECAG00000010461	LSM1	100	98.496	Equus_caballus
ENSCHOG00000006030	LSM1	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSCHOG00000006030	LSM1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSCHOG00000006030	LSM1	100	84.211	ENSELUG00000023374	lsm1	100	84.211	Esox_lucius
ENSCHOG00000006030	LSM1	100	99.248	ENSFCAG00000039335	LSM1	100	99.248	Felis_catus
ENSCHOG00000006030	LSM1	89	95.763	ENSFALG00000006723	LSM1	100	95.763	Ficedula_albicollis
ENSCHOG00000006030	LSM1	100	99.248	ENSFDAG00000007658	LSM1	100	99.248	Fukomys_damarensis
ENSCHOG00000006030	LSM1	100	82.707	ENSFHEG00000009556	lsm1	100	82.707	Fundulus_heteroclitus
ENSCHOG00000006030	LSM1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSCHOG00000006030	LSM1	100	93.985	ENSGALG00000003245	LSM1	100	93.985	Gallus_gallus
ENSCHOG00000006030	LSM1	100	82.707	ENSGAFG00000011355	lsm1	100	82.707	Gambusia_affinis
ENSCHOG00000006030	LSM1	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSCHOG00000006030	LSM1	100	94.737	ENSGAGG00000024065	LSM1	100	94.737	Gopherus_agassizii
ENSCHOG00000006030	LSM1	100	99.248	ENSGGOG00000022658	LSM1	100	99.248	Gorilla_gorilla
ENSCHOG00000006030	LSM1	100	83.459	ENSHBUG00000010897	lsm1	100	83.459	Haplochromis_burtoni
ENSCHOG00000006030	LSM1	100	99.248	ENSHGLG00000005711	LSM1	100	99.248	Heterocephalus_glaber_female
ENSCHOG00000006030	LSM1	100	79.699	ENSHGLG00000017574	-	100	79.699	Heterocephalus_glaber_female
ENSCHOG00000006030	LSM1	100	79.699	ENSHGLG00100012152	-	100	79.699	Heterocephalus_glaber_male
ENSCHOG00000006030	LSM1	100	99.248	ENSHGLG00100017660	LSM1	100	99.248	Heterocephalus_glaber_male
ENSCHOG00000006030	LSM1	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSCHOG00000006030	LSM1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSCHOG00000006030	LSM1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSCHOG00000006030	LSM1	100	97.744	ENSJJAG00000014605	-	100	97.744	Jaculus_jaculus
ENSCHOG00000006030	LSM1	100	83.459	ENSKMAG00000003016	lsm1	100	83.459	Kryptolebias_marmoratus
ENSCHOG00000006030	LSM1	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSCHOG00000006030	LSM1	89	89.831	ENSLACG00000010947	LSM1	98	89.831	Latimeria_chalumnae
ENSCHOG00000006030	LSM1	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSCHOG00000006030	LSM1	100	99.248	ENSLAFG00000003534	LSM1	100	99.248	Loxodonta_africana
ENSCHOG00000006030	LSM1	100	99.248	ENSMFAG00000032661	LSM1	100	99.248	Macaca_fascicularis
ENSCHOG00000006030	LSM1	100	99.248	ENSMLEG00000034535	LSM1	100	99.248	Mandrillus_leucophaeus
ENSCHOG00000006030	LSM1	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSCHOG00000006030	LSM1	100	83.459	ENSMZEG00005010321	lsm1	100	83.459	Maylandia_zebra
ENSCHOG00000006030	LSM1	100	93.985	ENSMGAG00000002125	LSM1	100	93.985	Meleagris_gallopavo
ENSCHOG00000006030	LSM1	100	98.496	ENSMICG00000030726	LSM1	100	98.496	Microcebus_murinus
ENSCHOG00000006030	LSM1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
ENSCHOG00000006030	LSM1	100	84.211	ENSMMOG00000015466	lsm1	100	84.211	Mola_mola
ENSCHOG00000006030	LSM1	100	96.992	ENSMODG00000010732	-	100	96.992	Monodelphis_domestica
ENSCHOG00000006030	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSCHOG00000006030	LSM1	100	96.992	MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	Mus_caroli
ENSCHOG00000006030	LSM1	100	96.992	ENSMUSG00000037296	Lsm1	100	96.992	Mus_musculus
ENSCHOG00000006030	LSM1	100	96.992	MGP_PahariEiJ_G0021400	Lsm1	100	96.992	Mus_pahari
ENSCHOG00000006030	LSM1	100	96.992	MGP_SPRETEiJ_G0032049	Lsm1	100	96.992	Mus_spretus
ENSCHOG00000006030	LSM1	100	98.496	ENSMPUG00000009883	LSM1	100	98.496	Mustela_putorius_furo
ENSCHOG00000006030	LSM1	100	98.496	ENSMLUG00000003734	LSM1	100	98.496	Myotis_lucifugus
ENSCHOG00000006030	LSM1	100	98.496	ENSNGAG00000003753	Lsm1	100	98.496	Nannospalax_galili
ENSCHOG00000006030	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSCHOG00000006030	LSM1	100	99.248	ENSNLEG00000029390	LSM1	100	99.248	Nomascus_leucogenys
ENSCHOG00000006030	LSM1	100	96.992	ENSMEUG00000014077	LSM1	100	96.992	Notamacropus_eugenii
ENSCHOG00000006030	LSM1	88	94.017	ENSOPRG00000000333	LSM1	100	94.017	Ochotona_princeps
ENSCHOG00000006030	LSM1	100	99.248	ENSODEG00000004834	LSM1	100	99.248	Octodon_degus
ENSCHOG00000006030	LSM1	100	83.459	ENSONIG00000010782	lsm1	100	83.459	Oreochromis_niloticus
ENSCHOG00000006030	LSM1	100	96.241	ENSOANG00000003256	LSM1	100	96.241	Ornithorhynchus_anatinus
ENSCHOG00000006030	LSM1	100	99.248	ENSOCUG00000015399	LSM1	100	99.248	Oryctolagus_cuniculus
ENSCHOG00000006030	LSM1	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSCHOG00000006030	LSM1	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSCHOG00000006030	LSM1	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
ENSCHOG00000006030	LSM1	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSCHOG00000006030	LSM1	100	84.962	ENSOMEG00000012454	lsm1	100	84.962	Oryzias_melastigma
ENSCHOG00000006030	LSM1	100	99.248	ENSOGAG00000015161	LSM1	100	99.248	Otolemur_garnettii
ENSCHOG00000006030	LSM1	100	99.248	ENSOARG00000001317	LSM1	100	99.248	Ovis_aries
ENSCHOG00000006030	LSM1	100	99.248	ENSPPAG00000032279	LSM1	100	99.248	Pan_paniscus
ENSCHOG00000006030	LSM1	100	99.248	ENSPPRG00000014172	-	100	99.248	Panthera_pardus
ENSCHOG00000006030	LSM1	100	99.248	ENSPTIG00000010289	LSM1	100	99.248	Panthera_tigris_altaica
ENSCHOG00000006030	LSM1	100	99.248	ENSPTRG00000020169	LSM1	100	99.248	Pan_troglodytes
ENSCHOG00000006030	LSM1	100	99.248	ENSPANG00000008814	LSM1	100	99.248	Papio_anubis
ENSCHOG00000006030	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSCHOG00000006030	LSM1	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSCHOG00000006030	LSM1	98	88.462	ENSPSIG00000012563	LSM1	99	88.462	Pelodiscus_sinensis
ENSCHOG00000006030	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSCHOG00000006030	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSCHOG00000006030	LSM1	100	96.992	ENSPCIG00000008880	LSM1	100	96.992	Phascolarctos_cinereus
ENSCHOG00000006030	LSM1	100	82.707	ENSPFOG00000016029	lsm1	100	82.707	Poecilia_formosa
ENSCHOG00000006030	LSM1	100	82.707	ENSPLAG00000007879	lsm1	100	82.707	Poecilia_latipinna
ENSCHOG00000006030	LSM1	100	82.707	ENSPMEG00000023550	lsm1	100	82.707	Poecilia_mexicana
ENSCHOG00000006030	LSM1	100	82.707	ENSPREG00000009574	lsm1	100	82.707	Poecilia_reticulata
ENSCHOG00000006030	LSM1	100	99.248	ENSPPYG00000018521	LSM1	100	99.248	Pongo_abelii
ENSCHOG00000006030	LSM1	100	99.248	ENSPCOG00000020901	-	100	99.248	Propithecus_coquereli
ENSCHOG00000006030	LSM1	100	99.248	ENSPVAG00000006016	LSM1	100	99.248	Pteropus_vampyrus
ENSCHOG00000006030	LSM1	100	83.459	ENSPNYG00000018067	lsm1	100	83.459	Pundamilia_nyererei
ENSCHOG00000006030	LSM1	100	84.962	ENSPNAG00000013707	lsm1	100	84.962	Pygocentrus_nattereri
ENSCHOG00000006030	LSM1	100	96.992	ENSRNOG00000015375	Lsm1	100	96.992	Rattus_norvegicus
ENSCHOG00000006030	LSM1	100	99.248	ENSRBIG00000027449	LSM1	100	99.248	Rhinopithecus_bieti
ENSCHOG00000006030	LSM1	100	99.248	ENSRROG00000036074	LSM1	100	99.248	Rhinopithecus_roxellana
ENSCHOG00000006030	LSM1	100	96.992	ENSSHAG00000017260	LSM1	100	96.992	Sarcophilus_harrisii
ENSCHOG00000006030	LSM1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSCHOG00000006030	LSM1	100	83.459	ENSSMAG00000004930	lsm1	100	83.459	Scophthalmus_maximus
ENSCHOG00000006030	LSM1	100	84.962	ENSSDUG00000021823	lsm1	100	84.962	Seriola_dumerili
ENSCHOG00000006030	LSM1	100	84.962	ENSSLDG00000012154	lsm1	100	84.962	Seriola_lalandi_dorsalis
ENSCHOG00000006030	LSM1	100	94.737	ENSSPUG00000014878	LSM1	100	94.737	Sphenodon_punctatus
ENSCHOG00000006030	LSM1	100	84.211	ENSSPAG00000020548	lsm1	100	84.211	Stegastes_partitus
ENSCHOG00000006030	LSM1	100	97.744	ENSSSCG00000039058	LSM1	100	97.744	Sus_scrofa
ENSCHOG00000006030	LSM1	100	95.489	ENSTGUG00000004793	LSM1	100	95.489	Taeniopygia_guttata
ENSCHOG00000006030	LSM1	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSCHOG00000006030	LSM1	100	86.466	ENSTNIG00000004055	lsm1	100	86.466	Tetraodon_nigroviridis
ENSCHOG00000006030	LSM1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
ENSCHOG00000006030	LSM1	100	99.248	ENSTTRG00000004482	LSM1	100	99.248	Tursiops_truncatus
ENSCHOG00000006030	LSM1	100	99.248	ENSUAMG00000004103	LSM1	100	99.248	Ursus_americanus
ENSCHOG00000006030	LSM1	100	99.248	ENSUMAG00000009132	LSM1	100	99.248	Ursus_maritimus
ENSCHOG00000006030	LSM1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSCHOG00000006030	LSM1	100	99.248	ENSVVUG00000020191	LSM1	100	99.248	Vulpes_vulpes
ENSCHOG00000006030	LSM1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSCHOG00000006030	LSM1	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSCHOG00000006030	LSM1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSCHOG00000006030	LSM1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus