EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHOG00000008615 (Gene tree)
Gene ID: -
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Plus strand
Length: 378 bases
Position: chrscaffold_97880:527-904
Accession: 17562
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000007619	LSM	PF01423.22	5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000008632	LSM10-201	378	-	ENSCHOP00000007619	125 (aa)	-	UPI0001F9FF01

Gene Model

Click here to download ENSCHOG00000008615's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000008615's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHOG00000008615	LSM10	54	30.000	ENSCHOG00000007702	LSM2	74	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000008615	LSM10	100	93.600	ENSG00000181817	LSM10	100	93.600	Homo_sapiens
ENSCHOG00000008615	LSM10	100	89.600	ENSAMEG00000019854	LSM10	100	89.600	Ailuropoda_melanoleuca
ENSCHOG00000008615	LSM10	94	65.254	ENSACIG00000015420	oscp1a	77	65.254	Amphilophus_citrinellus
ENSCHOG00000008615	LSM10	96	65.833	ENSAOCG00000015618	LSM10	98	65.833	Amphiprion_ocellaris
ENSCHOG00000008615	LSM10	89	64.865	ENSAOCG00000015607	LSM10	86	64.865	Amphiprion_ocellaris
ENSCHOG00000008615	LSM10	96	65.833	ENSAOCG00000014654	-	98	65.833	Amphiprion_ocellaris
ENSCHOG00000008615	LSM10	89	64.865	ENSAPEG00000021851	LSM10	86	64.865	Amphiprion_percula
ENSCHOG00000008615	LSM10	96	65.833	ENSAPEG00000021845	-	98	65.833	Amphiprion_percula
ENSCHOG00000008615	LSM10	91	59.649	ENSATEG00000006310	oscp1a	84	59.649	Anabas_testudineus
ENSCHOG00000008615	LSM10	100	66.400	ENSACAG00000001231	LSM10	100	66.400	Anolis_carolinensis
ENSCHOG00000008615	LSM10	99	91.129	ENSANAG00000031489	-	100	91.129	Aotus_nancymaae
ENSCHOG00000008615	LSM10	100	92.800	ENSANAG00000018759	-	100	92.800	Aotus_nancymaae
ENSCHOG00000008615	LSM10	96	64.167	ENSACLG00000004728	oscp1a	96	64.167	Astatotilapia_calliptera
ENSCHOG00000008615	LSM10	96	65.000	ENSAMXG00000025301	oscp1a	98	65.000	Astyanax_mexicanus
ENSCHOG00000008615	LSM10	98	90.984	ENSBTAG00000024096	LSM10	98	90.984	Bos_taurus
ENSCHOG00000008615	LSM10	100	92.000	ENSCJAG00000044880	LSM10	100	92.000	Callithrix_jacchus
ENSCHOG00000008615	LSM10	100	91.200	ENSCAFG00000003382	LSM10	100	91.200	Canis_familiaris
ENSCHOG00000008615	LSM10	100	91.200	ENSCAFG00020008920	LSM10	100	91.200	Canis_lupus_dingo
ENSCHOG00000008615	LSM10	98	90.984	ENSCHIG00000009398	LSM10	98	90.984	Capra_hircus
ENSCHOG00000008615	LSM10	100	91.200	ENSCAPG00000012567	LSM10	100	91.200	Cavia_aperea
ENSCHOG00000008615	LSM10	100	91.200	ENSCPOG00000039302	LSM10	100	91.200	Cavia_porcellus
ENSCHOG00000008615	LSM10	100	92.800	ENSCCAG00000018913	-	100	92.800	Cebus_capucinus
ENSCHOG00000008615	LSM10	99	91.129	ENSCCAG00000008378	-	99	91.129	Cebus_capucinus
ENSCHOG00000008615	LSM10	100	92.800	ENSCATG00000006589	LSM10	100	92.800	Cercocebus_atys
ENSCHOG00000008615	LSM10	100	92.800	ENSCLAG00000008633	LSM10	100	92.800	Chinchilla_lanigera
ENSCHOG00000008615	LSM10	100	92.800	ENSCSAG00000000134	LSM10	100	92.800	Chlorocebus_sabaeus
ENSCHOG00000008615	LSM10	82	32.353	ENSCSAVG00000001896	-	87	32.353	Ciona_savignyi
ENSCHOG00000008615	LSM10	100	92.800	ENSCANG00000019928	LSM10	100	92.800	Colobus_angolensis_palliatus
ENSCHOG00000008615	LSM10	94	80.672	ENSCGRG00001022673	-	94	80.672	Cricetulus_griseus_chok1gshd
ENSCHOG00000008615	LSM10	99	89.516	ENSCGRG00001004317	-	100	89.516	Cricetulus_griseus_chok1gshd
ENSCHOG00000008615	LSM10	94	80.672	ENSCGRG00000015514	-	94	80.672	Cricetulus_griseus_crigri
ENSCHOG00000008615	LSM10	99	89.516	ENSCGRG00000014935	-	100	89.516	Cricetulus_griseus_crigri
ENSCHOG00000008615	LSM10	96	60.833	ENSCSEG00000010374	oscp1a	79	60.833	Cynoglossus_semilaevis
ENSCHOG00000008615	LSM10	97	62.810	ENSCVAG00000001536	oscp1a	90	62.810	Cyprinodon_variegatus
ENSCHOG00000008615	LSM10	68	69.412	ENSDARG00000109563	CABZ01074453.1	99	69.412	Danio_rerio
ENSCHOG00000008615	LSM10	98	68.293	ENSDARG00000101222	oscp1a	100	68.293	Danio_rerio
ENSCHOG00000008615	LSM10	98	94.262	ENSDNOG00000036662	LSM10	98	94.262	Dasypus_novemcinctus
ENSCHOG00000008615	LSM10	100	91.200	ENSDORG00000007579	Lsm10	100	91.200	Dipodomys_ordii
ENSCHOG00000008615	LSM10	84	30.275	FBgn0033554	Lsm10	77	30.275	Drosophila_melanogaster
ENSCHOG00000008615	LSM10	100	87.200	ENSETEG00000005703	LSM10	100	87.200	Echinops_telfairi
ENSCHOG00000008615	LSM10	98	51.613	ENSEBUG00000001312	oscp1a	99	51.613	Eptatretus_burgeri
ENSCHOG00000008615	LSM10	100	91.200	ENSEASG00005012194	LSM10	100	91.200	Equus_asinus_asinus
ENSCHOG00000008615	LSM10	100	92.000	ENSECAG00000005071	LSM10	100	92.000	Equus_caballus
ENSCHOG00000008615	LSM10	100	89.600	ENSEEUG00000012032	LSM10	100	89.600	Erinaceus_europaeus
ENSCHOG00000008615	LSM10	98	66.667	ENSELUG00000007452	oscp1a	99	66.667	Esox_lucius
ENSCHOG00000008615	LSM10	95	71.429	ENSFALG00000000851	LSM10	95	71.429	Ficedula_albicollis
ENSCHOG00000008615	LSM10	100	88.800	ENSFDAG00000021056	LSM10	100	88.800	Fukomys_damarensis
ENSCHOG00000008615	LSM10	89	65.766	ENSFHEG00000001058	oscp1a	95	65.766	Fundulus_heteroclitus
ENSCHOG00000008615	LSM10	85	65.094	ENSGMOG00000019832	oscp1a	89	65.094	Gadus_morhua
ENSCHOG00000008615	LSM10	100	72.000	ENSGALG00000002127	LSM10	100	72.000	Gallus_gallus
ENSCHOG00000008615	LSM10	84	60.000	ENSGAFG00000016445	oscp1a	84	60.000	Gambusia_affinis
ENSCHOG00000008615	LSM10	96	60.833	ENSGACG00000002329	oscp1a	97	60.833	Gasterosteus_aculeatus
ENSCHOG00000008615	LSM10	100	72.800	ENSGAGG00000024848	LSM10	100	72.800	Gopherus_agassizii
ENSCHOG00000008615	LSM10	100	93.600	ENSGGOG00000003556	LSM10	100	93.600	Gorilla_gorilla
ENSCHOG00000008615	LSM10	96	64.167	ENSHBUG00000001722	oscp1a	96	64.167	Haplochromis_burtoni
ENSCHOG00000008615	LSM10	100	92.000	ENSHGLG00000011625	LSM10	100	92.000	Heterocephalus_glaber_female
ENSCHOG00000008615	LSM10	100	92.000	ENSHGLG00100001769	LSM10	100	92.000	Heterocephalus_glaber_male
ENSCHOG00000008615	LSM10	84	66.667	ENSIPUG00000005808	oscp1a	91	66.667	Ictalurus_punctatus
ENSCHOG00000008615	LSM10	100	90.400	ENSSTOG00000000606	LSM10	100	90.400	Ictidomys_tridecemlineatus
ENSCHOG00000008615	LSM10	96	61.667	ENSKMAG00000012143	oscp1a	98	61.667	Kryptolebias_marmoratus
ENSCHOG00000008615	LSM10	98	62.295	ENSLBEG00000017764	oscp1a	98	62.295	Labrus_bergylta
ENSCHOG00000008615	LSM10	100	71.200	ENSLACG00000015904	LSM10	95	71.200	Latimeria_chalumnae
ENSCHOG00000008615	LSM10	98	69.672	ENSLOCG00000018277	oscp1a	98	69.672	Lepisosteus_oculatus
ENSCHOG00000008615	LSM10	100	90.400	ENSLAFG00000009600	LSM10	100	90.400	Loxodonta_africana
ENSCHOG00000008615	LSM10	100	92.800	ENSMFAG00000009115	LSM10	100	92.800	Macaca_fascicularis
ENSCHOG00000008615	LSM10	100	92.800	ENSMMUG00000017338	LSM10	100	92.800	Macaca_mulatta
ENSCHOG00000008615	LSM10	100	92.800	ENSMNEG00000020023	LSM10	100	92.800	Macaca_nemestrina
ENSCHOG00000008615	LSM10	100	92.800	ENSMLEG00000025150	LSM10	100	92.800	Mandrillus_leucophaeus
ENSCHOG00000008615	LSM10	98	62.295	ENSMAMG00000004427	oscp1a	100	62.295	Mastacembelus_armatus
ENSCHOG00000008615	LSM10	96	64.167	ENSMZEG00005026307	oscp1a	96	64.167	Maylandia_zebra
ENSCHOG00000008615	LSM10	100	71.200	ENSMGAG00000015707	LSM10	100	71.200	Meleagris_gallopavo
ENSCHOG00000008615	LSM10	99	88.710	ENSMAUG00000016624	Lsm10	100	88.710	Mesocricetus_auratus
ENSCHOG00000008615	LSM10	98	90.244	ENSMOCG00000021943	Lsm10	99	90.244	Microtus_ochrogaster
ENSCHOG00000008615	LSM10	96	61.667	ENSMMOG00000013597	oscp1a	89	61.667	Mola_mola
ENSCHOG00000008615	LSM10	100	80.800	ENSMODG00000023328	LSM10	100	80.800	Monodelphis_domestica
ENSCHOG00000008615	LSM10	57	56.579	ENSMALG00000012661	oscp1a	60	56.579	Monopterus_albus
ENSCHOG00000008615	LSM10	98	90.244	MGP_CAROLIEiJ_G0026467	Lsm10	100	90.323	Mus_caroli
ENSCHOG00000008615	LSM10	98	91.057	ENSMUSG00000050188	Lsm10	100	91.398	Mus_musculus
ENSCHOG00000008615	LSM10	98	91.057	MGP_PahariEiJ_G0028798	Lsm10	100	91.398	Mus_pahari
ENSCHOG00000008615	LSM10	98	91.057	MGP_SPRETEiJ_G0027446	Lsm10	100	91.398	Mus_spretus
ENSCHOG00000008615	LSM10	100	91.200	ENSMPUG00000018593	LSM10	100	91.200	Mustela_putorius_furo
ENSCHOG00000008615	LSM10	100	87.200	ENSMLUG00000023895	LSM10	100	87.200	Myotis_lucifugus
ENSCHOG00000008615	LSM10	100	92.000	ENSNGAG00000015011	Lsm10	100	92.000	Nannospalax_galili
ENSCHOG00000008615	LSM10	96	65.000	ENSNBRG00000014306	oscp1a	96	65.000	Neolamprologus_brichardi
ENSCHOG00000008615	LSM10	100	93.600	ENSNLEG00000033754	LSM10	100	93.600	Nomascus_leucogenys
ENSCHOG00000008615	LSM10	100	80.800	ENSMEUG00000006313	LSM10	100	80.800	Notamacropus_eugenii
ENSCHOG00000008615	LSM10	100	91.200	ENSOPRG00000001699	LSM10	100	91.200	Ochotona_princeps
ENSCHOG00000008615	LSM10	100	92.800	ENSODEG00000019161	LSM10	100	92.800	Octodon_degus
ENSCHOG00000008615	LSM10	96	65.000	ENSONIG00000020904	oscp1a	97	65.000	Oreochromis_niloticus
ENSCHOG00000008615	LSM10	100	74.400	ENSOANG00000002066	LSM10	100	74.400	Ornithorhynchus_anatinus
ENSCHOG00000008615	LSM10	100	90.400	ENSOCUG00000005333	LSM10	100	90.400	Oryctolagus_cuniculus
ENSCHOG00000008615	LSM10	97	63.636	ENSORLG00000009504	oscp1a	98	63.636	Oryzias_latipes
ENSCHOG00000008615	LSM10	97	63.636	ENSORLG00020016201	oscp1a	98	63.636	Oryzias_latipes_hni
ENSCHOG00000008615	LSM10	97	63.636	ENSORLG00015007794	oscp1a	98	63.636	Oryzias_latipes_hsok
ENSCHOG00000008615	LSM10	100	89.600	ENSOGAG00000002653	LSM10	100	89.600	Otolemur_garnettii
ENSCHOG00000008615	LSM10	98	90.984	ENSOARG00000009596	LSM10	98	90.984	Ovis_aries
ENSCHOG00000008615	LSM10	100	93.600	ENSPPAG00000023465	LSM10	100	93.600	Pan_paniscus
ENSCHOG00000008615	LSM10	100	92.000	ENSPPRG00000014619	LSM10	100	92.000	Panthera_pardus
ENSCHOG00000008615	LSM10	100	92.000	ENSPTIG00000004613	LSM10	100	92.000	Panthera_tigris_altaica
ENSCHOG00000008615	LSM10	100	93.600	ENSPTRG00000000539	LSM10	100	93.600	Pan_troglodytes
ENSCHOG00000008615	LSM10	100	92.800	ENSPANG00000023172	LSM10	100	92.800	Papio_anubis
ENSCHOG00000008615	LSM10	98	63.934	ENSPKIG00000003728	oscp1a	97	63.934	Paramormyrops_kingsleyae
ENSCHOG00000008615	LSM10	100	70.400	ENSPSIG00000000590	LSM10	100	70.400	Pelodiscus_sinensis
ENSCHOG00000008615	LSM10	61	61.842	ENSPMGG00000015718	oscp1a	99	61.842	Periophthalmus_magnuspinnatus
ENSCHOG00000008615	LSM10	96	74.167	ENSPCIG00000014865	LSM10	88	74.167	Phascolarctos_cinereus
ENSCHOG00000008615	LSM10	91	64.035	ENSPFOG00000020490	oscp1a	95	64.035	Poecilia_formosa
ENSCHOG00000008615	LSM10	91	64.035	ENSPLAG00000016537	oscp1a	85	64.035	Poecilia_latipinna
ENSCHOG00000008615	LSM10	93	62.931	ENSPMEG00000000174	oscp1a	96	62.931	Poecilia_mexicana
ENSCHOG00000008615	LSM10	91	63.158	ENSPREG00000009899	oscp1a	85	63.158	Poecilia_reticulata
ENSCHOG00000008615	LSM10	100	94.400	ENSPPYG00000001539	LSM10	100	94.400	Pongo_abelii
ENSCHOG00000008615	LSM10	100	89.600	ENSPCAG00000002520	LSM10	100	89.600	Procavia_capensis
ENSCHOG00000008615	LSM10	100	89.600	ENSPVAG00000008644	LSM10	100	89.600	Pteropus_vampyrus
ENSCHOG00000008615	LSM10	96	64.167	ENSPNYG00000003138	oscp1a	96	64.167	Pundamilia_nyererei
ENSCHOG00000008615	LSM10	95	63.025	ENSPNAG00000028829	oscp1a	97	63.025	Pygocentrus_nattereri
ENSCHOG00000008615	LSM10	98	91.870	ENSRNOG00000025716	Lsm10	99	91.870	Rattus_norvegicus
ENSCHOG00000008615	LSM10	100	92.800	ENSRBIG00000001561	LSM10	100	92.800	Rhinopithecus_bieti
ENSCHOG00000008615	LSM10	100	92.800	ENSRROG00000011414	LSM10	100	92.800	Rhinopithecus_roxellana
ENSCHOG00000008615	LSM10	100	92.800	ENSSBOG00000036413	-	100	92.800	Saimiri_boliviensis_boliviensis
ENSCHOG00000008615	LSM10	100	80.000	ENSSHAG00000018056	LSM10	100	80.000	Sarcophilus_harrisii
ENSCHOG00000008615	LSM10	99	62.097	ENSSFOG00015019954	lsm10	100	62.097	Scleropages_formosus
ENSCHOG00000008615	LSM10	94	62.393	ENSSMAG00000001297	oscp1a	98	62.393	Scophthalmus_maximus
ENSCHOG00000008615	LSM10	98	61.789	ENSSDUG00000007090	oscp1a	98	61.789	Seriola_dumerili
ENSCHOG00000008615	LSM10	94	62.712	ENSSLDG00000000800	oscp1a	96	62.712	Seriola_lalandi_dorsalis
ENSCHOG00000008615	LSM10	100	92.000	ENSSARG00000004211	LSM10	100	92.000	Sorex_araneus
ENSCHOG00000008615	LSM10	94	63.559	ENSSPAG00000009229	oscp1a	96	63.559	Stegastes_partitus
ENSCHOG00000008615	LSM10	100	88.000	ENSSSCG00000038916	LSM10	100	88.000	Sus_scrofa
ENSCHOG00000008615	LSM10	96	71.667	ENSTGUG00000001602	-	97	71.667	Taeniopygia_guttata
ENSCHOG00000008615	LSM10	96	71.667	ENSTGUG00000001600	-	97	71.667	Taeniopygia_guttata
ENSCHOG00000008615	LSM10	97	63.636	ENSTRUG00000010531	oscp1a	96	63.636	Takifugu_rubripes
ENSCHOG00000008615	LSM10	100	91.200	ENSTBEG00000016674	LSM10	100	91.200	Tupaia_belangeri
ENSCHOG00000008615	LSM10	100	89.600	ENSUAMG00000020265	LSM10	100	89.600	Ursus_americanus
ENSCHOG00000008615	LSM10	100	89.600	ENSUMAG00000001438	LSM10	57	89.600	Ursus_maritimus
ENSCHOG00000008615	LSM10	100	91.200	ENSVVUG00000023209	LSM10	100	91.200	Vulpes_vulpes
ENSCHOG00000008615	LSM10	100	68.800	ENSXETG00000027631	lsm10	100	68.800	Xenopus_tropicalis
ENSCHOG00000008615	LSM10	94	61.538	ENSXCOG00000018776	oscp1a	72	61.538	Xiphophorus_couchianus
ENSCHOG00000008615	LSM10	93	61.207	ENSXMAG00000019963	oscp1a	88	61.207	Xiphophorus_maculatus