EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHOG00000008913 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Minus strand
Length: 42383 bases
Position: chrGeneScaffold_2703:18496-60878
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000007888	RRM_1	PF00076.22	1.2e-32	1	2
ENSCHOP00000007888	RRM_1	PF00076.22	1.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000008937	PSPC1-201	1566	-	ENSCHOP00000007888	521 (aa)	-	UPI0001F9FDBD

Gene Model

Click here to download ENSCHOG00000008913's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000008913's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHOG00000008913	PSPC1	51	75.281	ENSCHOG00000009131	SFPQ	63	75.630

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000008913	PSPC1	100	91.396	ENSG00000121390	PSPC1	100	95.161	Homo_sapiens
ENSCHOG00000008913	PSPC1	91	65.714	ENSAPOG00000015946	pspc1	84	65.301	Acanthochromis_polyacanthus
ENSCHOG00000008913	PSPC1	100	91.013	ENSAMEG00000017420	PSPC1	100	91.396	Ailuropoda_melanoleuca
ENSCHOG00000008913	PSPC1	99	57.514	ENSACIG00000018695	pspc1	91	56.287	Amphilophus_citrinellus
ENSCHOG00000008913	PSPC1	91	64.837	ENSAOCG00000005279	pspc1	84	63.807	Amphiprion_ocellaris
ENSCHOG00000008913	PSPC1	91	65.839	ENSAPEG00000015927	pspc1	82	66.742	Amphiprion_percula
ENSCHOG00000008913	PSPC1	88	57.415	ENSATEG00000004878	pspc1	76	60.964	Anabas_testudineus
ENSCHOG00000008913	PSPC1	77	87.871	ENSAPLG00000006246	PSPC1	100	86.386	Anas_platyrhynchos
ENSCHOG00000008913	PSPC1	88	59.611	ENSAPLG00000003643	SFPQ	56	75.601	Anas_platyrhynchos
ENSCHOG00000008913	PSPC1	99	78.850	ENSACAG00000002093	PSPC1	99	78.759	Anolis_carolinensis
ENSCHOG00000008913	PSPC1	100	91.013	ENSANAG00000000059	PSPC1	98	94.560	Aotus_nancymaae
ENSCHOG00000008913	PSPC1	99	56.881	ENSACLG00000027220	pspc1	100	53.676	Astatotilapia_calliptera
ENSCHOG00000008913	PSPC1	99	60.000	ENSAMXG00000036881	pspc1	82	68.009	Astyanax_mexicanus
ENSCHOG00000008913	PSPC1	100	90.076	ENSBTAG00000003934	PSPC1	100	89.313	Bos_taurus
ENSCHOG00000008913	PSPC1	100	91.013	ENSCJAG00000004554	PSPC1	100	91.396	Callithrix_jacchus
ENSCHOG00000008913	PSPC1	100	90.249	ENSCAFG00020002009	PSPC1	98	96.373	Canis_lupus_dingo
ENSCHOG00000008913	PSPC1	100	90.076	ENSCHIG00000016708	PSPC1	100	89.313	Capra_hircus
ENSCHOG00000008913	PSPC1	76	84.328	ENSTSYG00000032882	PSPC1	93	78.622	Carlito_syrichta
ENSCHOG00000008913	PSPC1	100	89.866	ENSCPOG00000000395	PSPC1	98	95.078	Cavia_porcellus
ENSCHOG00000008913	PSPC1	100	91.205	ENSCCAG00000033498	PSPC1	100	91.396	Cebus_capucinus
ENSCHOG00000008913	PSPC1	100	91.396	ENSCATG00000036434	PSPC1	97	97.143	Cercocebus_atys
ENSCHOG00000008913	PSPC1	88	81.641	ENSCLAG00000005241	PSPC1	99	81.857	Chinchilla_lanigera
ENSCHOG00000008913	PSPC1	99	82.163	ENSCPBG00000020859	PSPC1	99	82.115	Chrysemys_picta_bellii
ENSCHOG00000008913	PSPC1	59	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSCHOG00000008913	PSPC1	77	82.469	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSCHOG00000008913	PSPC1	100	90.057	ENSCGRG00001018368	Pspc1	100	90.249	Cricetulus_griseus_chok1gshd
ENSCHOG00000008913	PSPC1	100	90.057	ENSCGRG00000011724	Pspc1	100	90.249	Cricetulus_griseus_crigri
ENSCHOG00000008913	PSPC1	87	65.727	ENSCVAG00000007679	-	83	65.695	Cyprinodon_variegatus
ENSCHOG00000008913	PSPC1	99	63.296	ENSDARG00000006621	pspc1	100	64.078	Danio_rerio
ENSCHOG00000008913	PSPC1	100	92.925	ENSDNOG00000011078	PSPC1	100	93.117	Dasypus_novemcinctus
ENSCHOG00000008913	PSPC1	100	87.763	ENSDORG00000016050	Pspc1	100	87.954	Dipodomys_ordii
ENSCHOG00000008913	PSPC1	55	100.000	ENSETEG00000000502	-	55	100.000	Echinops_telfairi
ENSCHOG00000008913	PSPC1	59	46.687	ENSEBUG00000010133	pspc1	79	49.169	Eptatretus_burgeri
ENSCHOG00000008913	PSPC1	88	56.757	ENSEBUG00000003964	-	59	72.424	Eptatretus_burgeri
ENSCHOG00000008913	PSPC1	100	89.675	ENSEASG00005000119	PSPC1	98	96.114	Equus_asinus_asinus
ENSCHOG00000008913	PSPC1	100	89.675	ENSECAG00000017286	PSPC1	98	96.114	Equus_caballus
ENSCHOG00000008913	PSPC1	74	95.082	ENSEEUG00000011288	-	73	95.082	Erinaceus_europaeus
ENSCHOG00000008913	PSPC1	99	63.352	ENSELUG00000003746	pspc1	82	80.294	Esox_lucius
ENSCHOG00000008913	PSPC1	100	91.013	ENSFCAG00000027841	PSPC1	98	96.114	Felis_catus
ENSCHOG00000008913	PSPC1	89	89.507	ENSFALG00000008750	PSPC1	99	81.870	Ficedula_albicollis
ENSCHOG00000008913	PSPC1	100	88.719	ENSFDAG00000002617	PSPC1	100	88.910	Fukomys_damarensis
ENSCHOG00000008913	PSPC1	88	62.635	ENSGMOG00000015074	pspc1	86	62.121	Gadus_morhua
ENSCHOG00000008913	PSPC1	88	90.043	ENSGALG00000017142	PSPC1	99	81.801	Gallus_gallus
ENSCHOG00000008913	PSPC1	66	74.640	ENSGAFG00000006327	pspc1	72	74.499	Gambusia_affinis
ENSCHOG00000008913	PSPC1	88	62.635	ENSGACG00000014901	pspc1	91	74.074	Gasterosteus_aculeatus
ENSCHOG00000008913	PSPC1	99	82.163	ENSGAGG00000019164	PSPC1	99	82.115	Gopherus_agassizii
ENSCHOG00000008913	PSPC1	100	91.205	ENSGGOG00000003414	PSPC1	98	96.891	Gorilla_gorilla
ENSCHOG00000008913	PSPC1	99	60.958	ENSHBUG00000001139	pspc1	100	60.221	Haplochromis_burtoni
ENSCHOG00000008913	PSPC1	100	89.866	ENSHGLG00000018811	PSPC1	100	89.484	Heterocephalus_glaber_female
ENSCHOG00000008913	PSPC1	67	92.000	ENSHGLG00100007962	PSPC1	100	92.000	Heterocephalus_glaber_male
ENSCHOG00000008913	PSPC1	73	66.580	ENSHCOG00000013251	pspc1	82	65.952	Hippocampus_comes
ENSCHOG00000008913	PSPC1	99	63.089	ENSIPUG00000013192	pspc1	88	70.426	Ictalurus_punctatus
ENSCHOG00000008913	PSPC1	100	91.013	ENSSTOG00000026833	PSPC1	98	96.891	Ictidomys_tridecemlineatus
ENSCHOG00000008913	PSPC1	100	91.013	ENSJJAG00000018334	Pspc1	100	91.396	Jaculus_jaculus
ENSCHOG00000008913	PSPC1	88	55.195	ENSKMAG00000013525	-	66	69.097	Kryptolebias_marmoratus
ENSCHOG00000008913	PSPC1	96	60.845	ENSLBEG00000004474	pspc1	77	73.352	Labrus_bergylta
ENSCHOG00000008913	PSPC1	99	73.905	ENSLACG00000010762	PSPC1	99	73.512	Latimeria_chalumnae
ENSCHOG00000008913	PSPC1	88	79.610	ENSLOCG00000010832	pspc1	99	72.989	Lepisosteus_oculatus
ENSCHOG00000008913	PSPC1	100	91.396	ENSLAFG00000010968	PSPC1	100	91.587	Loxodonta_africana
ENSCHOG00000008913	PSPC1	100	91.587	ENSMFAG00000032728	PSPC1	98	97.429	Macaca_fascicularis
ENSCHOG00000008913	PSPC1	100	91.587	ENSMMUG00000020262	PSPC1	95	97.429	Macaca_mulatta
ENSCHOG00000008913	PSPC1	100	91.587	ENSMNEG00000027401	PSPC1	100	91.778	Macaca_nemestrina
ENSCHOG00000008913	PSPC1	81	100.000	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSCHOG00000008913	PSPC1	90	62.880	ENSMAMG00000004333	pspc1	82	64.602	Mastacembelus_armatus
ENSCHOG00000008913	PSPC1	99	56.881	ENSMZEG00005005726	pspc1	100	53.676	Maylandia_zebra
ENSCHOG00000008913	PSPC1	77	87.685	ENSMGAG00000015134	PSPC1	100	86.207	Meleagris_gallopavo
ENSCHOG00000008913	PSPC1	88	83.550	ENSMAUG00000021067	Pspc1	99	83.766	Mesocricetus_auratus
ENSCHOG00000008913	PSPC1	100	91.013	ENSMICG00000013970	PSPC1	98	96.632	Microcebus_murinus
ENSCHOG00000008913	PSPC1	100	90.631	ENSMOCG00000006060	Pspc1	100	90.822	Microtus_ochrogaster
ENSCHOG00000008913	PSPC1	67	53.276	ENSMMOG00000004352	pspc1	62	51.163	Mola_mola
ENSCHOG00000008913	PSPC1	93	89.897	ENSMODG00000008029	PSPC1	78	90.103	Monodelphis_domestica
ENSCHOG00000008913	PSPC1	91	63.618	ENSMALG00000008914	pspc1	89	63.158	Monopterus_albus
ENSCHOG00000008913	PSPC1	100	90.458	MGP_CAROLIEiJ_G0019341	Pspc1	100	90.649	Mus_caroli
ENSCHOG00000008913	PSPC1	100	90.649	ENSMUSG00000021938	Pspc1	100	90.840	Mus_musculus
ENSCHOG00000008913	PSPC1	100	90.458	MGP_PahariEiJ_G0030359	Pspc1	100	90.649	Mus_pahari
ENSCHOG00000008913	PSPC1	100	90.458	MGP_SPRETEiJ_G0020232	Pspc1	100	90.649	Mus_spretus
ENSCHOG00000008913	PSPC1	100	90.631	ENSMPUG00000013347	PSPC1	100	91.013	Mustela_putorius_furo
ENSCHOG00000008913	PSPC1	100	89.163	ENSMLUG00000017663	PSPC1	100	89.544	Myotis_lucifugus
ENSCHOG00000008913	PSPC1	100	90.249	ENSNGAG00000011271	Pspc1	100	90.440	Nannospalax_galili
ENSCHOG00000008913	PSPC1	74	65.128	ENSNBRG00000014059	pspc1	92	62.183	Neolamprologus_brichardi
ENSCHOG00000008913	PSPC1	100	91.396	ENSNLEG00000001294	PSPC1	100	91.587	Nomascus_leucogenys
ENSCHOG00000008913	PSPC1	84	95.312	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSCHOG00000008913	PSPC1	100	79.198	ENSODEG00000019012	-	100	79.962	Octodon_degus
ENSCHOG00000008913	PSPC1	100	78.967	ENSODEG00000007817	-	100	75.614	Octodon_degus
ENSCHOG00000008913	PSPC1	99	60.958	ENSONIG00000012010	pspc1	99	59.563	Oreochromis_niloticus
ENSCHOG00000008913	PSPC1	76	90.226	ENSOANG00000009017	-	100	89.724	Ornithorhynchus_anatinus
ENSCHOG00000008913	PSPC1	99	63.602	ENSOANG00000011381	-	99	59.848	Ornithorhynchus_anatinus
ENSCHOG00000008913	PSPC1	100	91.205	ENSOCUG00000006153	PSPC1	100	91.396	Oryctolagus_cuniculus
ENSCHOG00000008913	PSPC1	88	66.738	ENSORLG00000004232	-	92	58.546	Oryzias_latipes
ENSCHOG00000008913	PSPC1	89	65.823	ENSORLG00020000578	PSPC1	89	61.066	Oryzias_latipes_hni
ENSCHOG00000008913	PSPC1	88	67.164	ENSORLG00015017480	pspc1	87	62.716	Oryzias_latipes_hsok
ENSCHOG00000008913	PSPC1	100	91.778	ENSOGAG00000012643	PSPC1	100	91.969	Otolemur_garnettii
ENSCHOG00000008913	PSPC1	100	85.333	ENSOARG00000014163	PSPC1	100	85.524	Ovis_aries
ENSCHOG00000008913	PSPC1	89	85.193	ENSPPAG00000009836	PSPC1	93	99.085	Pan_paniscus
ENSCHOG00000008913	PSPC1	100	91.013	ENSPPRG00000008833	PSPC1	100	91.396	Panthera_pardus
ENSCHOG00000008913	PSPC1	100	77.055	ENSPTIG00000016917	PSPC1	100	77.247	Panthera_tigris_altaica
ENSCHOG00000008913	PSPC1	93	90.741	ENSPTRG00000005677	PSPC1	98	96.891	Pan_troglodytes
ENSCHOG00000008913	PSPC1	100	91.587	ENSPANG00000001992	PSPC1	96	97.429	Papio_anubis
ENSCHOG00000008913	PSPC1	81	73.821	ENSPKIG00000003578	pspc1	80	73.131	Paramormyrops_kingsleyae
ENSCHOG00000008913	PSPC1	99	81.921	ENSPSIG00000005168	PSPC1	99	81.310	Pelodiscus_sinensis
ENSCHOG00000008913	PSPC1	58	69.649	ENSPMGG00000015135	pspc1	86	69.551	Periophthalmus_magnuspinnatus
ENSCHOG00000008913	PSPC1	100	90.631	ENSPEMG00000015214	Pspc1	100	90.822	Peromyscus_maniculatus_bairdii
ENSCHOG00000008913	PSPC1	54	45.361	ENSPMAG00000004618	pspc1	88	45.361	Petromyzon_marinus
ENSCHOG00000008913	PSPC1	99	90.805	ENSPCIG00000017680	PSPC1	100	90.996	Phascolarctos_cinereus
ENSCHOG00000008913	PSPC1	92	63.692	ENSPFOG00000003362	pspc1	93	61.943	Poecilia_formosa
ENSCHOG00000008913	PSPC1	92	63.692	ENSPLAG00000011540	pspc1	92	61.943	Poecilia_latipinna
ENSCHOG00000008913	PSPC1	92	63.286	ENSPMEG00000008322	pspc1	92	61.538	Poecilia_mexicana
ENSCHOG00000008913	PSPC1	92	63.692	ENSPREG00000007786	pspc1	92	61.943	Poecilia_reticulata
ENSCHOG00000008913	PSPC1	100	90.440	ENSPPYG00000005186	PSPC1	100	91.396	Pongo_abelii
ENSCHOG00000008913	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSCHOG00000008913	PSPC1	100	92.352	ENSPCOG00000014364	PSPC1	100	92.352	Propithecus_coquereli
ENSCHOG00000008913	PSPC1	100	86.998	ENSPVAG00000005036	PSPC1	100	88.528	Pteropus_vampyrus
ENSCHOG00000008913	PSPC1	99	57.064	ENSPNYG00000008893	pspc1	100	53.860	Pundamilia_nyererei
ENSCHOG00000008913	PSPC1	99	63.246	ENSPNAG00000016511	pspc1	100	63.738	Pygocentrus_nattereri
ENSCHOG00000008913	PSPC1	100	90.440	ENSRNOG00000020782	Pspc1	100	90.631	Rattus_norvegicus
ENSCHOG00000008913	PSPC1	93	90.965	ENSRBIG00000036057	PSPC1	98	96.857	Rhinopithecus_bieti
ENSCHOG00000008913	PSPC1	100	91.396	ENSRROG00000036334	PSPC1	98	96.891	Rhinopithecus_roxellana
ENSCHOG00000008913	PSPC1	79	81.114	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSCHOG00000008913	PSPC1	100	85.524	ENSSHAG00000004696	PSPC1	100	85.714	Sarcophilus_harrisii
ENSCHOG00000008913	PSPC1	81	74.292	ENSSFOG00015001395	pspc1	89	73.709	Scleropages_formosus
ENSCHOG00000008913	PSPC1	96	60.735	ENSSMAG00000001761	pspc1	85	75.581	Scophthalmus_maximus
ENSCHOG00000008913	PSPC1	88	65.385	ENSSDUG00000010651	pspc1	80	67.411	Seriola_dumerili
ENSCHOG00000008913	PSPC1	88	64.009	ENSSLDG00000004284	pspc1	85	59.202	Seriola_lalandi_dorsalis
ENSCHOG00000008913	PSPC1	100	83.556	ENSSARG00000000888	PSPC1	100	83.556	Sorex_araneus
ENSCHOG00000008913	PSPC1	99	73.864	ENSSPUG00000008550	PSPC1	99	73.512	Sphenodon_punctatus
ENSCHOG00000008913	PSPC1	90	64.706	ENSSPAG00000001921	pspc1	81	66.592	Stegastes_partitus
ENSCHOG00000008913	PSPC1	100	89.101	ENSSSCG00000009569	PSPC1	99	94.832	Sus_scrofa
ENSCHOG00000008913	PSPC1	89	89.507	ENSTGUG00000011295	PSPC1	100	88.223	Taeniopygia_guttata
ENSCHOG00000008913	PSPC1	88	59.574	ENSTRUG00000011335	pspc1	77	61.369	Takifugu_rubripes
ENSCHOG00000008913	PSPC1	88	62.099	ENSTNIG00000010358	pspc1	88	61.872	Tetraodon_nigroviridis
ENSCHOG00000008913	PSPC1	90	84.456	ENSTBEG00000002361	PSPC1	75	86.010	Tupaia_belangeri
ENSCHOG00000008913	PSPC1	100	90.057	ENSTTRG00000003343	PSPC1	100	89.866	Tursiops_truncatus
ENSCHOG00000008913	PSPC1	67	96.011	ENSUAMG00000012309	PSPC1	100	96.011	Ursus_americanus
ENSCHOG00000008913	PSPC1	93	90.760	ENSUMAG00000013993	PSPC1	96	97.093	Ursus_maritimus
ENSCHOG00000008913	PSPC1	76	91.228	ENSVPAG00000010029	PSPC1	100	91.479	Vicugna_pacos
ENSCHOG00000008913	PSPC1	100	90.249	ENSVVUG00000006414	PSPC1	100	96.373	Vulpes_vulpes
ENSCHOG00000008913	PSPC1	66	73.639	ENSXCOG00000017438	pspc1	83	73.639	Xiphophorus_couchianus
ENSCHOG00000008913	PSPC1	66	73.926	ENSXMAG00000007929	pspc1	83	73.926	Xiphophorus_maculatus