EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000008986 (Gene tree)
Gene ID: -
Gene Symbol: SRP54
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Plus strand
Length: 40511 bases
Position: chrGeneScaffold_1297:642-41152
Accession: 11301
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000007950	SRP54	PF00448.22	1.8e-54	1	2
ENSCHOP00000007950	SRP54	PF00448.22	1.8e-54	2	2
ENSCHOP00000007950	SRP54_N	PF02881.19	8.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000009009	SRP54-201	1422	-	ENSCHOP00000007950	474 (aa)	-	UPI0001F9FEB4

Gene Model

Click here to download ENSCHOG00000008986's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000008986's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000008986	SRP54	100	87.942	ENSG00000100883	SRP54	100	100.000	Homo_sapiens
ENSCHOG00000008986	SRP54	100	84.823	ENSAPOG00000011314	srp54	95	84.823	Acanthochromis_polyacanthus
ENSCHOG00000008986	SRP54	100	87.942	ENSAMEG00000015544	SRP54	95	87.942	Ailuropoda_melanoleuca
ENSCHOG00000008986	SRP54	93	83.073	ENSACIG00000022831	srp54	97	83.073	Amphilophus_citrinellus
ENSCHOG00000008986	SRP54	100	84.823	ENSAOCG00000019401	srp54	95	84.823	Amphiprion_ocellaris
ENSCHOG00000008986	SRP54	100	84.823	ENSAPEG00000001977	srp54	95	84.823	Amphiprion_percula
ENSCHOG00000008986	SRP54	100	85.031	ENSATEG00000013877	srp54	95	85.031	Anabas_testudineus
ENSCHOG00000008986	SRP54	99	86.498	ENSAPLG00000010125	SRP54	95	86.498	Anas_platyrhynchos
ENSCHOG00000008986	SRP54	100	86.486	ENSACAG00000002103	-	95	86.486	Anolis_carolinensis
ENSCHOG00000008986	SRP54	58	76.868	ENSACAG00000001124	-	84	76.868	Anolis_carolinensis
ENSCHOG00000008986	SRP54	85	81.265	ENSACAG00000010631	-	95	81.265	Anolis_carolinensis
ENSCHOG00000008986	SRP54	100	87.942	ENSANAG00000022133	SRP54	95	87.942	Aotus_nancymaae
ENSCHOG00000008986	SRP54	100	84.823	ENSACLG00000015866	srp54	95	84.823	Astatotilapia_calliptera
ENSCHOG00000008986	SRP54	100	84.200	ENSAMXG00000032669	SRP54	95	84.200	Astyanax_mexicanus
ENSCHOG00000008986	SRP54	100	87.942	ENSBTAG00000019085	SRP54	95	87.942	Bos_taurus
ENSCHOG00000008986	SRP54	100	63.223	WBGene00009012	F21D5.7	98	63.223	Caenorhabditis_elegans
ENSCHOG00000008986	SRP54	100	87.942	ENSCJAG00000006581	SRP54	95	87.942	Callithrix_jacchus
ENSCHOG00000008986	SRP54	100	87.942	ENSCAFG00000013331	SRP54	95	87.942	Canis_familiaris
ENSCHOG00000008986	SRP54	100	87.942	ENSCAFG00020023427	SRP54	95	87.942	Canis_lupus_dingo
ENSCHOG00000008986	SRP54	100	87.942	ENSCHIG00000026345	SRP54	95	87.942	Capra_hircus
ENSCHOG00000008986	SRP54	99	78.105	ENSTSYG00000035333	-	93	78.105	Carlito_syrichta
ENSCHOG00000008986	SRP54	100	87.734	ENSTSYG00000002680	-	95	87.734	Carlito_syrichta
ENSCHOG00000008986	SRP54	82	70.270	ENSCAPG00000008780	SRP54	80	70.270	Cavia_aperea
ENSCHOG00000008986	SRP54	100	87.526	ENSCPOG00000003691	SRP54	95	87.526	Cavia_porcellus
ENSCHOG00000008986	SRP54	89	85.139	ENSCCAG00000024179	SRP54	95	85.354	Cebus_capucinus
ENSCHOG00000008986	SRP54	100	87.942	ENSCATG00000034083	SRP54	95	87.942	Cercocebus_atys
ENSCHOG00000008986	SRP54	100	87.942	ENSCLAG00000015076	SRP54	95	87.942	Chinchilla_lanigera
ENSCHOG00000008986	SRP54	100	87.942	ENSCSAG00000015575	SRP54	95	87.942	Chlorocebus_sabaeus
ENSCHOG00000008986	SRP54	100	87.110	ENSCPBG00000026195	SRP54	95	87.110	Chrysemys_picta_bellii
ENSCHOG00000008986	SRP54	100	72.500	ENSCING00000007380	-	96	72.500	Ciona_intestinalis
ENSCHOG00000008986	SRP54	100	87.942	ENSCANG00000028532	SRP54	95	87.942	Colobus_angolensis_palliatus
ENSCHOG00000008986	SRP54	100	87.734	ENSCGRG00001009525	-	95	87.734	Cricetulus_griseus_chok1gshd
ENSCHOG00000008986	SRP54	80	84.675	ENSCGRG00000009453	-	89	84.675	Cricetulus_griseus_crigri
ENSCHOG00000008986	SRP54	100	84.200	ENSCSEG00000012392	srp54	95	84.200	Cynoglossus_semilaevis
ENSCHOG00000008986	SRP54	100	84.823	ENSCVAG00000010395	srp54	95	84.823	Cyprinodon_variegatus
ENSCHOG00000008986	SRP54	100	84.615	ENSDARG00000098367	srp54	95	84.615	Danio_rerio
ENSCHOG00000008986	SRP54	100	87.942	ENSDNOG00000032525	SRP54	95	87.942	Dasypus_novemcinctus
ENSCHOG00000008986	SRP54	93	74.099	ENSDORG00000005159	-	97	74.099	Dipodomys_ordii
ENSCHOG00000008986	SRP54	100	68.191	FBgn0010747	Srp54k	95	68.191	Drosophila_melanogaster
ENSCHOG00000008986	SRP54	100	86.902	ENSETEG00000016307	-	95	86.902	Echinops_telfairi
ENSCHOG00000008986	SRP54	70	68.421	ENSETEG00000012102	-	83	68.421	Echinops_telfairi
ENSCHOG00000008986	SRP54	100	79.002	ENSEBUG00000009437	-	95	79.002	Eptatretus_burgeri
ENSCHOG00000008986	SRP54	100	87.942	ENSEASG00005002057	SRP54	95	87.942	Equus_asinus_asinus
ENSCHOG00000008986	SRP54	100	87.942	ENSECAG00000018042	SRP54	95	87.942	Equus_caballus
ENSCHOG00000008986	SRP54	100	70.686	ENSEEUG00000001511	SRP54	95	70.686	Erinaceus_europaeus
ENSCHOG00000008986	SRP54	100	84.200	ENSELUG00000003395	srp54	95	84.200	Esox_lucius
ENSCHOG00000008986	SRP54	100	87.942	ENSFCAG00000032033	SRP54	95	87.942	Felis_catus
ENSCHOG00000008986	SRP54	100	86.694	ENSFALG00000005995	SRP54	95	86.694	Ficedula_albicollis
ENSCHOG00000008986	SRP54	100	87.942	ENSFDAG00000016767	SRP54	97	87.942	Fukomys_damarensis
ENSCHOG00000008986	SRP54	100	84.407	ENSFHEG00000004263	srp54	95	84.407	Fundulus_heteroclitus
ENSCHOG00000008986	SRP54	95	84.176	ENSGMOG00000011391	srp54	95	84.176	Gadus_morhua
ENSCHOG00000008986	SRP54	100	86.694	ENSGALG00000023135	SRP54	95	86.694	Gallus_gallus
ENSCHOG00000008986	SRP54	100	85.031	ENSGAFG00000011586	srp54	95	85.031	Gambusia_affinis
ENSCHOG00000008986	SRP54	100	84.200	ENSGACG00000004181	srp54	100	82.949	Gasterosteus_aculeatus
ENSCHOG00000008986	SRP54	100	87.110	ENSGAGG00000014766	SRP54	95	87.110	Gopherus_agassizii
ENSCHOG00000008986	SRP54	100	87.942	ENSGGOG00000002926	SRP54	95	87.942	Gorilla_gorilla
ENSCHOG00000008986	SRP54	100	84.823	ENSHBUG00000005678	srp54	95	84.823	Haplochromis_burtoni
ENSCHOG00000008986	SRP54	100	87.942	ENSHGLG00000002850	SRP54	95	87.942	Heterocephalus_glaber_female
ENSCHOG00000008986	SRP54	100	87.942	ENSHGLG00100005263	SRP54	95	87.942	Heterocephalus_glaber_male
ENSCHOG00000008986	SRP54	100	58.921	ENSHGLG00100007281	-	94	58.921	Heterocephalus_glaber_male
ENSCHOG00000008986	SRP54	100	83.368	ENSHCOG00000021127	srp54	95	83.368	Hippocampus_comes
ENSCHOG00000008986	SRP54	100	83.784	ENSIPUG00000001420	srp54	95	83.784	Ictalurus_punctatus
ENSCHOG00000008986	SRP54	100	87.942	ENSSTOG00000016023	SRP54	95	87.942	Ictidomys_tridecemlineatus
ENSCHOG00000008986	SRP54	100	84.244	ENSJJAG00000013417	-	95	84.244	Jaculus_jaculus
ENSCHOG00000008986	SRP54	86	63.133	ENSJJAG00000016404	-	94	63.133	Jaculus_jaculus
ENSCHOG00000008986	SRP54	100	84.407	ENSKMAG00000007707	srp54	95	84.407	Kryptolebias_marmoratus
ENSCHOG00000008986	SRP54	100	84.823	ENSLBEG00000021122	srp54	95	84.823	Labrus_bergylta
ENSCHOG00000008986	SRP54	100	84.823	ENSLBEG00000018690	srp54	95	84.823	Labrus_bergylta
ENSCHOG00000008986	SRP54	100	84.823	ENSLACG00000017890	SRP54	95	84.823	Latimeria_chalumnae
ENSCHOG00000008986	SRP54	100	85.031	ENSLOCG00000009440	srp54	95	85.031	Lepisosteus_oculatus
ENSCHOG00000008986	SRP54	100	87.942	ENSLAFG00000012007	SRP54	95	87.942	Loxodonta_africana
ENSCHOG00000008986	SRP54	100	87.942	ENSMFAG00000044371	SRP54	95	87.942	Macaca_fascicularis
ENSCHOG00000008986	SRP54	100	87.942	ENSMMUG00000015073	FAM177A1	95	87.942	Macaca_mulatta
ENSCHOG00000008986	SRP54	100	87.942	ENSMNEG00000006947	SRP54	95	87.942	Macaca_nemestrina
ENSCHOG00000008986	SRP54	100	87.942	ENSMLEG00000042251	SRP54	95	87.942	Mandrillus_leucophaeus
ENSCHOG00000008986	SRP54	100	84.823	ENSMAMG00000004803	srp54	95	84.823	Mastacembelus_armatus
ENSCHOG00000008986	SRP54	100	84.823	ENSMZEG00005027528	srp54	95	84.823	Maylandia_zebra
ENSCHOG00000008986	SRP54	100	81.781	ENSMGAG00000012481	SRP54	95	81.781	Meleagris_gallopavo
ENSCHOG00000008986	SRP54	100	87.734	ENSMAUG00000014447	-	95	87.734	Mesocricetus_auratus
ENSCHOG00000008986	SRP54	100	87.942	ENSMICG00000010270	SRP54	95	87.942	Microcebus_murinus
ENSCHOG00000008986	SRP54	86	85.851	ENSMOCG00000000948	-	95	85.851	Microtus_ochrogaster
ENSCHOG00000008986	SRP54	93	82.774	ENSMMOG00000020303	srp54	98	82.774	Mola_mola
ENSCHOG00000008986	SRP54	100	87.734	ENSMODG00000023150	-	95	87.734	Monodelphis_domestica
ENSCHOG00000008986	SRP54	100	87.734	ENSMODG00000012925	-	95	87.734	Monodelphis_domestica
ENSCHOG00000008986	SRP54	93	82.812	ENSMALG00000009163	srp54	99	82.812	Monopterus_albus
ENSCHOG00000008986	SRP54	100	87.734	MGP_CAROLIEiJ_G0017754	-	95	87.734	Mus_caroli
ENSCHOG00000008986	SRP54	100	87.734	ENSMUSG00000073079	Srp54a	100	100.000	Mus_musculus
ENSCHOG00000008986	SRP54	100	87.734	ENSMUSG00000112449	Srp54b	92	95.238	Mus_musculus
ENSCHOG00000008986	SRP54	100	86.902	ENSMUSG00000079108	Srp54c	95	86.902	Mus_musculus
ENSCHOG00000008986	SRP54	100	87.734	MGP_PahariEiJ_G0029510	-	95	87.734	Mus_pahari
ENSCHOG00000008986	SRP54	100	87.942	ENSMPUG00000016302	SRP54	95	87.942	Mustela_putorius_furo
ENSCHOG00000008986	SRP54	100	87.318	ENSMLUG00000008958	SRP54	95	87.318	Myotis_lucifugus
ENSCHOG00000008986	SRP54	100	85.655	ENSNGAG00000019806	-	95	85.655	Nannospalax_galili
ENSCHOG00000008986	SRP54	86	82.734	ENSNBRG00000006000	srp54	95	82.734	Neolamprologus_brichardi
ENSCHOG00000008986	SRP54	100	87.942	ENSNLEG00000003496	SRP54	95	87.942	Nomascus_leucogenys
ENSCHOG00000008986	SRP54	61	100.000	ENSMEUG00000000138	-	67	100.000	Notamacropus_eugenii
ENSCHOG00000008986	SRP54	100	87.942	ENSODEG00000004865	SRP54	95	87.942	Octodon_degus
ENSCHOG00000008986	SRP54	100	84.823	ENSONIG00000011768	srp54	95	84.823	Oreochromis_niloticus
ENSCHOG00000008986	SRP54	100	87.942	ENSOANG00000014051	SRP54	95	87.942	Ornithorhynchus_anatinus
ENSCHOG00000008986	SRP54	100	87.318	ENSOCUG00000007838	SRP54	95	87.318	Oryctolagus_cuniculus
ENSCHOG00000008986	SRP54	100	84.615	ENSORLG00000010027	srp54	95	84.615	Oryzias_latipes
ENSCHOG00000008986	SRP54	100	84.615	ENSORLG00020001878	srp54	95	84.615	Oryzias_latipes_hni
ENSCHOG00000008986	SRP54	100	84.615	ENSORLG00015021866	srp54	95	84.615	Oryzias_latipes_hsok
ENSCHOG00000008986	SRP54	100	84.615	ENSOMEG00000020952	srp54	95	84.615	Oryzias_melastigma
ENSCHOG00000008986	SRP54	100	87.942	ENSOGAG00000012188	SRP54	95	87.942	Otolemur_garnettii
ENSCHOG00000008986	SRP54	100	87.942	ENSOARG00000007160	SRP54	95	87.942	Ovis_aries
ENSCHOG00000008986	SRP54	100	87.942	ENSPPAG00000017434	SRP54	95	87.942	Pan_paniscus
ENSCHOG00000008986	SRP54	100	86.902	ENSPPRG00000014047	SRP54	95	86.902	Panthera_pardus
ENSCHOG00000008986	SRP54	100	87.942	ENSPTIG00000000744	SRP54	91	87.942	Panthera_tigris_altaica
ENSCHOG00000008986	SRP54	100	87.942	ENSPTRG00000006259	FAM177A1	95	87.942	Pan_troglodytes
ENSCHOG00000008986	SRP54	100	87.942	ENSPANG00000023853	SRP54	95	87.942	Papio_anubis
ENSCHOG00000008986	SRP54	100	84.407	ENSPKIG00000001953	srp54	95	84.407	Paramormyrops_kingsleyae
ENSCHOG00000008986	SRP54	100	86.902	ENSPSIG00000006476	SRP54	95	86.902	Pelodiscus_sinensis
ENSCHOG00000008986	SRP54	96	81.739	ENSPMGG00000004127	srp54	99	81.739	Periophthalmus_magnuspinnatus
ENSCHOG00000008986	SRP54	100	76.101	ENSPEMG00000019634	-	95	76.101	Peromyscus_maniculatus_bairdii
ENSCHOG00000008986	SRP54	100	80.457	ENSPMAG00000006078	-	95	80.457	Petromyzon_marinus
ENSCHOG00000008986	SRP54	100	87.734	ENSPCIG00000016175	SRP54	95	87.734	Phascolarctos_cinereus
ENSCHOG00000008986	SRP54	100	85.031	ENSPFOG00000008870	srp54	95	85.031	Poecilia_formosa
ENSCHOG00000008986	SRP54	100	85.031	ENSPLAG00000009889	srp54	95	85.031	Poecilia_latipinna
ENSCHOG00000008986	SRP54	100	85.031	ENSPMEG00000008601	srp54	95	85.031	Poecilia_mexicana
ENSCHOG00000008986	SRP54	100	85.031	ENSPREG00000004505	srp54	95	85.031	Poecilia_reticulata
ENSCHOG00000008986	SRP54	100	82.536	ENSPPYG00000005739	SRP54	95	82.536	Pongo_abelii
ENSCHOG00000008986	SRP54	100	91.892	ENSPCAG00000006268	SRP54	95	91.892	Procavia_capensis
ENSCHOG00000008986	SRP54	100	85.892	ENSPCOG00000022473	SRP54	95	85.892	Propithecus_coquereli
ENSCHOG00000008986	SRP54	57	100.000	ENSPVAG00000010056	SRP54	72	100.000	Pteropus_vampyrus
ENSCHOG00000008986	SRP54	100	84.823	ENSPNYG00000009717	srp54	95	84.823	Pundamilia_nyererei
ENSCHOG00000008986	SRP54	100	84.200	ENSPNAG00000008544	srp54	95	84.200	Pygocentrus_nattereri
ENSCHOG00000008986	SRP54	100	87.526	ENSRNOG00000032776	Srp54a	95	87.526	Rattus_norvegicus
ENSCHOG00000008986	SRP54	100	87.942	ENSRROG00000041292	SRP54	95	87.942	Rhinopithecus_roxellana
ENSCHOG00000008986	SRP54	90	44.773	YPR088C	SRP54	81	44.773	Saccharomyces_cerevisiae
ENSCHOG00000008986	SRP54	94	87.140	ENSSBOG00000035145	SRP54	95	87.140	Saimiri_boliviensis_boliviensis
ENSCHOG00000008986	SRP54	58	93.929	ENSSHAG00000000671	SRP54	82	93.929	Sarcophilus_harrisii
ENSCHOG00000008986	SRP54	100	85.031	ENSSFOG00015013920	srp54	95	85.031	Scleropages_formosus
ENSCHOG00000008986	SRP54	99	84.000	ENSSMAG00000002441	srp54	89	84.000	Scophthalmus_maximus
ENSCHOG00000008986	SRP54	100	84.615	ENSSDUG00000018586	srp54	95	84.615	Seriola_dumerili
ENSCHOG00000008986	SRP54	100	84.615	ENSSLDG00000010476	srp54	95	84.615	Seriola_lalandi_dorsalis
ENSCHOG00000008986	SRP54	100	87.942	ENSSARG00000002744	SRP54	95	87.942	Sorex_araneus
ENSCHOG00000008986	SRP54	100	87.110	ENSSPUG00000013101	SRP54	95	87.110	Sphenodon_punctatus
ENSCHOG00000008986	SRP54	100	84.823	ENSSPAG00000002354	srp54	95	84.823	Stegastes_partitus
ENSCHOG00000008986	SRP54	100	87.942	ENSSSCG00000001955	SRP54	95	87.942	Sus_scrofa
ENSCHOG00000008986	SRP54	99	86.498	ENSTGUG00000011945	-	95	86.498	Taeniopygia_guttata
ENSCHOG00000008986	SRP54	100	84.407	ENSTRUG00000007057	srp54	95	84.407	Takifugu_rubripes
ENSCHOG00000008986	SRP54	100	84.200	ENSTNIG00000002589	srp54	95	84.200	Tetraodon_nigroviridis
ENSCHOG00000008986	SRP54	88	78.066	ENSTBEG00000011409	SRP54	95	78.066	Tupaia_belangeri
ENSCHOG00000008986	SRP54	100	93.971	ENSTTRG00000000928	SRP54	95	93.971	Tursiops_truncatus
ENSCHOG00000008986	SRP54	55	84.351	ENSUAMG00000012385	SRP54	100	84.351	Ursus_americanus
ENSCHOG00000008986	SRP54	100	87.942	ENSUMAG00000011234	SRP54	95	87.942	Ursus_maritimus
ENSCHOG00000008986	SRP54	99	87.553	ENSVPAG00000005668	SRP54	100	87.553	Vicugna_pacos
ENSCHOG00000008986	SRP54	100	87.942	ENSVVUG00000019962	SRP54	95	87.942	Vulpes_vulpes
ENSCHOG00000008986	SRP54	100	70.816	ENSXETG00000012290	srp54	96	71.020	Xenopus_tropicalis
ENSCHOG00000008986	SRP54	92	84.199	ENSXCOG00000004658	srp54	96	84.199	Xiphophorus_couchianus
ENSCHOG00000008986	SRP54	100	85.031	ENSXMAG00000018315	srp54	95	85.031	Xiphophorus_maculatus