EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCHOG00000010245 (Gene tree)
Gene ID: -
Gene Symbol: PUM1
Alias: KIAA0099|PUMH1
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Minus strand
Length: 99252 bases
Position: chrGeneScaffold_3446:4724-103975
Accession: 14957
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000009079	PUF	PF00806.19	3.2e-35	1	4
ENSCHOP00000009079	PUF	PF00806.19	3.2e-35	2	4
ENSCHOP00000009079	PUF	PF00806.19	3.2e-35	3	4
ENSCHOP00000009079	PUF	PF00806.19	3.2e-35	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000010278	PUM1-201	3546	-	ENSCHOP00000009079	1181 (aa)	-	UPI0001FA04BA

Gene Model

Click here to download ENSCHOG00000010245's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000010245's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCHOG00000010245	PUM1	60	86.667	ENSCHOG00000004575	PUM2	64	87.097

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000010245	PUM1	93	96.547	ENSG00000134644	PUM1	100	100.000	Homo_sapiens
ENSCHOG00000010245	PUM1	93	65.700	ENSAPOG00000021632	pum1	99	64.734	Acanthochromis_polyacanthus
ENSCHOG00000010245	PUM1	93	95.989	ENSAMEG00000017656	PUM1	91	95.989	Ailuropoda_melanoleuca
ENSCHOG00000010245	PUM1	93	65.459	ENSACIG00000021013	pum1	93	66.150	Amphilophus_citrinellus
ENSCHOG00000010245	PUM1	93	65.700	ENSAOCG00000003944	pum1	99	69.072	Amphiprion_ocellaris
ENSCHOG00000010245	PUM1	93	65.700	ENSAPEG00000014550	pum1	99	69.072	Amphiprion_percula
ENSCHOG00000010245	PUM1	93	65.700	ENSATEG00000016004	pum1	99	68.900	Anabas_testudineus
ENSCHOG00000010245	PUM1	93	93.966	ENSAPLG00000009351	PUM1	93	93.966	Anas_platyrhynchos
ENSCHOG00000010245	PUM1	93	89.828	ENSACAG00000000682	PUM1	92	91.691	Anolis_carolinensis
ENSCHOG00000010245	PUM1	93	96.121	ENSANAG00000027865	PUM1	99	96.121	Aotus_nancymaae
ENSCHOG00000010245	PUM1	82	65.459	ENSACLG00000019354	pum1	92	68.385	Astatotilapia_calliptera
ENSCHOG00000010245	PUM1	93	67.760	ENSAMXG00000020607	pum1	90	68.331	Astyanax_mexicanus
ENSCHOG00000010245	PUM1	93	96.259	ENSBTAG00000018979	PUM1	99	96.259	Bos_taurus
ENSCHOG00000010245	PUM1	93	95.977	ENSCJAG00000006035	PUM1	99	95.977	Callithrix_jacchus
ENSCHOG00000010245	PUM1	93	92.098	ENSCAFG00000011205	PUM1	93	92.098	Canis_familiaris
ENSCHOG00000010245	PUM1	85	92.193	ENSCAFG00020024616	PUM1	99	92.193	Canis_lupus_dingo
ENSCHOG00000010245	PUM1	93	96.259	ENSCHIG00000012952	PUM1	99	96.259	Capra_hircus
ENSCHOG00000010245	PUM1	93	96.259	ENSTSYG00000008868	PUM1	99	96.121	Carlito_syrichta
ENSCHOG00000010245	PUM1	93	96.121	ENSCPOG00000031613	PUM1	92	99.306	Cavia_porcellus
ENSCHOG00000010245	PUM1	93	92.662	ENSCATG00000017991	PUM1	92	100.000	Cercocebus_atys
ENSCHOG00000010245	PUM1	93	96.264	ENSCLAG00000007662	PUM1	99	96.264	Chinchilla_lanigera
ENSCHOG00000010245	PUM1	93	94.908	ENSCSAG00000001028	PUM1	93	94.908	Chlorocebus_sabaeus
ENSCHOG00000010245	PUM1	93	94.126	ENSCPBG00000009288	PUM1	99	94.109	Chrysemys_picta_bellii
ENSCHOG00000010245	PUM1	93	96.418	ENSCANG00000042606	PUM1	99	96.408	Colobus_angolensis_palliatus
ENSCHOG00000010245	PUM1	93	95.827	ENSCGRG00001024949	Pum1	92	99.306	Cricetulus_griseus_chok1gshd
ENSCHOG00000010245	PUM1	93	95.827	ENSCGRG00000014197	Pum1	92	99.306	Cricetulus_griseus_crigri
ENSCHOG00000010245	PUM1	82	65.217	ENSCSEG00000015981	pum1	92	67.235	Cynoglossus_semilaevis
ENSCHOG00000010245	PUM1	93	65.459	ENSCVAG00000007043	pum1	93	65.120	Cyprinodon_variegatus
ENSCHOG00000010245	PUM1	93	69.671	ENSDARG00000099256	pum1	93	69.242	Danio_rerio
ENSCHOG00000010245	PUM1	93	96.552	ENSDNOG00000010939	PUM1	93	96.552	Dasypus_novemcinctus
ENSCHOG00000010245	PUM1	82	94.097	ENSDORG00000001875	Pum1	99	94.097	Dipodomys_ordii
ENSCHOG00000010245	PUM1	79	95.122	ENSETEG00000004355	PUM1	72	95.122	Echinops_telfairi
ENSCHOG00000010245	PUM1	93	95.971	ENSEASG00005010813	PUM1	93	95.971	Equus_asinus_asinus
ENSCHOG00000010245	PUM1	93	95.690	ENSECAG00000021369	PUM1	93	95.690	Equus_caballus
ENSCHOG00000010245	PUM1	73	96.309	ENSEEUG00000003871	PUM1	71	96.309	Erinaceus_europaeus
ENSCHOG00000010245	PUM1	93	67.070	ENSELUG00000002409	pum1	91	69.355	Esox_lucius
ENSCHOG00000010245	PUM1	93	96.403	ENSFCAG00000010374	PUM1	99	96.264	Felis_catus
ENSCHOG00000010245	PUM1	93	91.761	ENSFALG00000001214	PUM1	91	90.057	Ficedula_albicollis
ENSCHOG00000010245	PUM1	93	96.264	ENSFDAG00000011319	PUM1	92	99.306	Fukomys_damarensis
ENSCHOG00000010245	PUM1	85	65.459	ENSGMOG00000010491	pum1	93	64.976	Gadus_morhua
ENSCHOG00000010245	PUM1	93	94.388	ENSGALG00000042598	PUM1	93	94.956	Gallus_gallus
ENSCHOG00000010245	PUM1	93	65.459	ENSGAFG00000015617	pum1	99	68.041	Gambusia_affinis
ENSCHOG00000010245	PUM1	93	65.459	ENSGACG00000005717	pum1	93	65.455	Gasterosteus_aculeatus
ENSCHOG00000010245	PUM1	93	93.678	ENSGAGG00000001290	PUM1	93	93.678	Gopherus_agassizii
ENSCHOG00000010245	PUM1	93	96.418	ENSGGOG00000011983	PUM1	99	96.408	Gorilla_gorilla
ENSCHOG00000010245	PUM1	93	65.459	ENSHBUG00000018718	pum1	93	65.823	Haplochromis_burtoni
ENSCHOG00000010245	PUM1	93	96.121	ENSHGLG00000013819	Pum1	92	98.611	Heterocephalus_glaber_female
ENSCHOG00000010245	PUM1	93	96.121	ENSHGLG00100008621	Pum1	92	98.611	Heterocephalus_glaber_male
ENSCHOG00000010245	PUM1	78	66.495	ENSHCOG00000005149	pum1	89	67.526	Hippocampus_comes
ENSCHOG00000010245	PUM1	93	67.525	ENSIPUG00000020421	pum1	99	69.565	Ictalurus_punctatus
ENSCHOG00000010245	PUM1	93	96.403	ENSSTOG00000010757	PUM1	92	100.000	Ictidomys_tridecemlineatus
ENSCHOG00000010245	PUM1	93	95.827	ENSJJAG00000000530	Pum1	92	100.000	Jaculus_jaculus
ENSCHOG00000010245	PUM1	93	65.459	ENSKMAG00000003481	pum1	93	65.541	Kryptolebias_marmoratus
ENSCHOG00000010245	PUM1	93	65.700	ENSLBEG00000002527	pum1	93	65.217	Labrus_bergylta
ENSCHOG00000010245	PUM1	93	82.345	ENSLACG00000017188	PUM1	93	82.627	Latimeria_chalumnae
ENSCHOG00000010245	PUM1	93	79.915	ENSLOCG00000005210	pum1	93	80.339	Lepisosteus_oculatus
ENSCHOG00000010245	PUM1	93	95.690	ENSLAFG00000003178	PUM1	93	95.690	Loxodonta_africana
ENSCHOG00000010245	PUM1	93	96.547	ENSMFAG00000010291	PUM1	99	96.547	Macaca_fascicularis
ENSCHOG00000010245	PUM1	93	96.408	ENSMMUG00000013520	PUM1	99	96.408	Macaca_mulatta
ENSCHOG00000010245	PUM1	93	96.547	ENSMNEG00000034639	PUM1	99	96.408	Macaca_nemestrina
ENSCHOG00000010245	PUM1	93	96.537	ENSMLEG00000038743	PUM1	99	96.408	Mandrillus_leucophaeus
ENSCHOG00000010245	PUM1	93	65.700	ENSMAMG00000011606	pum1	92	67.470	Mastacembelus_armatus
ENSCHOG00000010245	PUM1	93	65.459	ENSMZEG00005005834	pum1	93	66.059	Maylandia_zebra
ENSCHOG00000010245	PUM1	93	93.822	ENSMGAG00000000724	PUM1	93	94.298	Meleagris_gallopavo
ENSCHOG00000010245	PUM1	93	95.683	ENSMAUG00000022090	Pum1	92	99.306	Mesocricetus_auratus
ENSCHOG00000010245	PUM1	93	95.977	ENSMICG00000007713	-	99	95.977	Microcebus_murinus
ENSCHOG00000010245	PUM1	93	94.517	ENSMICG00000012213	-	100	94.517	Microcebus_murinus
ENSCHOG00000010245	PUM1	93	95.546	ENSMOCG00000015463	Pum1	92	98.611	Microtus_ochrogaster
ENSCHOG00000010245	PUM1	82	64.976	ENSMMOG00000019817	pum1	99	64.706	Mola_mola
ENSCHOG00000010245	PUM1	93	95.122	ENSMODG00000017067	PUM1	93	95.122	Monodelphis_domestica
ENSCHOG00000010245	PUM1	82	65.862	ENSMALG00000016399	pum1	99	68.729	Monopterus_albus
ENSCHOG00000010245	PUM1	93	95.827	MGP_CAROLIEiJ_G0026549	Pum1	92	98.611	Mus_caroli
ENSCHOG00000010245	PUM1	93	96.115	ENSMUSG00000028580	Pum1	92	99.306	Mus_musculus
ENSCHOG00000010245	PUM1	93	95.827	MGP_PahariEiJ_G0028881	Pum1	92	99.306	Mus_pahari
ENSCHOG00000010245	PUM1	93	95.971	MGP_SPRETEiJ_G0027529	Pum1	92	99.306	Mus_spretus
ENSCHOG00000010245	PUM1	93	95.971	ENSMPUG00000015454	PUM1	93	95.971	Mustela_putorius_furo
ENSCHOG00000010245	PUM1	93	95.833	ENSMLUG00000006490	PUM1	93	95.833	Myotis_lucifugus
ENSCHOG00000010245	PUM1	93	95.971	ENSNGAG00000002378	Pum1	92	98.611	Nannospalax_galili
ENSCHOG00000010245	PUM1	73	69.256	ENSNBRG00000010689	pum1	91	73.312	Neolamprologus_brichardi
ENSCHOG00000010245	PUM1	93	96.132	ENSNLEG00000001151	PUM1	99	96.121	Nomascus_leucogenys
ENSCHOG00000010245	PUM1	64	100.000	ENSMEUG00000000976	-	61	98.765	Notamacropus_eugenii
ENSCHOG00000010245	PUM1	68	98.131	ENSOPRG00000001776	PUM1	66	98.131	Ochotona_princeps
ENSCHOG00000010245	PUM1	93	96.259	ENSODEG00000003465	PUM1	92	98.611	Octodon_degus
ENSCHOG00000010245	PUM1	93	65.700	ENSONIG00000002290	pum1	93	67.358	Oreochromis_niloticus
ENSCHOG00000010245	PUM1	67	95.161	ENSOANG00000004902	-	75	95.161	Ornithorhynchus_anatinus
ENSCHOG00000010245	PUM1	93	95.977	ENSOCUG00000008641	PUM1	93	95.977	Oryctolagus_cuniculus
ENSCHOG00000010245	PUM1	93	67.391	ENSORLG00000011482	pum1	93	65.449	Oryzias_latipes
ENSCHOG00000010245	PUM1	93	67.391	ENSORLG00020019461	pum1	93	65.309	Oryzias_latipes_hni
ENSCHOG00000010245	PUM1	93	67.391	ENSORLG00015011375	pum1	93	65.449	Oryzias_latipes_hsok
ENSCHOG00000010245	PUM1	82	66.667	ENSOMEG00000009312	pum1	99	65.292	Oryzias_melastigma
ENSCHOG00000010245	PUM1	93	96.121	ENSOGAG00000011063	PUM1	93	96.121	Otolemur_garnettii
ENSCHOG00000010245	PUM1	93	96.121	ENSOARG00000001899	PUM1	99	96.121	Ovis_aries
ENSCHOG00000010245	PUM1	93	96.418	ENSPPAG00000044003	PUM1	99	96.408	Pan_paniscus
ENSCHOG00000010245	PUM1	93	96.275	ENSPPRG00000001370	PUM1	92	100.000	Panthera_pardus
ENSCHOG00000010245	PUM1	93	95.989	ENSPTIG00000010798	PUM1	92	100.000	Panthera_tigris_altaica
ENSCHOG00000010245	PUM1	93	96.418	ENSPTRG00000000453	PUM1	99	96.408	Pan_troglodytes
ENSCHOG00000010245	PUM1	93	96.547	ENSPANG00000016338	PUM1	99	96.547	Papio_anubis
ENSCHOG00000010245	PUM1	93	67.413	ENSPKIG00000010578	pum1	99	68.985	Paramormyrops_kingsleyae
ENSCHOG00000010245	PUM1	93	94.676	ENSPSIG00000014118	PUM1	93	94.676	Pelodiscus_sinensis
ENSCHOG00000010245	PUM1	73	68.285	ENSPMGG00000005836	pum1	90	72.669	Periophthalmus_magnuspinnatus
ENSCHOG00000010245	PUM1	93	95.827	ENSPEMG00000010009	Pum1	92	99.306	Peromyscus_maniculatus_bairdii
ENSCHOG00000010245	PUM1	93	94.978	ENSPCIG00000014151	PUM1	99	94.978	Phascolarctos_cinereus
ENSCHOG00000010245	PUM1	87	67.030	ENSPFOG00000007289	pum1	93	68.118	Poecilia_formosa
ENSCHOG00000010245	PUM1	93	65.459	ENSPLAG00000007256	pum1	93	64.976	Poecilia_latipinna
ENSCHOG00000010245	PUM1	83	67.065	ENSPMEG00000019543	pum1	91	67.918	Poecilia_mexicana
ENSCHOG00000010245	PUM1	93	65.459	ENSPREG00000005195	pum1	91	68.098	Poecilia_reticulata
ENSCHOG00000010245	PUM1	93	93.324	ENSPPYG00000001621	PUM1	93	93.324	Pongo_abelii
ENSCHOG00000010245	PUM1	76	98.387	ENSPCAG00000001979	PUM1	74	98.387	Procavia_capensis
ENSCHOG00000010245	PUM1	93	95.977	ENSPCOG00000004398	PUM1	99	95.977	Propithecus_coquereli
ENSCHOG00000010245	PUM1	93	96.132	ENSPVAG00000005207	PUM1	91	96.132	Pteropus_vampyrus
ENSCHOG00000010245	PUM1	93	65.459	ENSPNYG00000009518	pum1	99	68.557	Pundamilia_nyererei
ENSCHOG00000010245	PUM1	93	68.526	ENSPNAG00000026728	pum1	93	68.813	Pygocentrus_nattereri
ENSCHOG00000010245	PUM1	93	95.827	ENSRNOG00000011709	Pum1	93	95.827	Rattus_norvegicus
ENSCHOG00000010245	PUM1	93	96.547	ENSRBIG00000042521	PUM1	99	96.547	Rhinopithecus_bieti
ENSCHOG00000010245	PUM1	93	96.547	ENSRROG00000020156	PUM1	99	96.408	Rhinopithecus_roxellana
ENSCHOG00000010245	PUM1	93	96.121	ENSSBOG00000032037	PUM1	99	96.121	Saimiri_boliviensis_boliviensis
ENSCHOG00000010245	PUM1	93	94.692	ENSSHAG00000010918	PUM1	93	94.692	Sarcophilus_harrisii
ENSCHOG00000010245	PUM1	93	65.700	ENSSMAG00000010918	pum1	99	67.182	Scophthalmus_maximus
ENSCHOG00000010245	PUM1	93	65.700	ENSSDUG00000009021	pum1	93	66.245	Seriola_dumerili
ENSCHOG00000010245	PUM1	88	65.700	ENSSLDG00000009667	pum1	92	66.594	Seriola_lalandi_dorsalis
ENSCHOG00000010245	PUM1	87	99.563	ENSSARG00000003055	PUM1	85	99.563	Sorex_araneus
ENSCHOG00000010245	PUM1	93	93.525	ENSSPUG00000006267	PUM1	93	93.525	Sphenodon_punctatus
ENSCHOG00000010245	PUM1	93	65.700	ENSSPAG00000016636	pum1	99	69.072	Stegastes_partitus
ENSCHOG00000010245	PUM1	93	96.547	ENSSSCG00000003591	PUM1	99	96.547	Sus_scrofa
ENSCHOG00000010245	PUM1	93	65.700	ENSTRUG00000013121	pum1	91	72.347	Takifugu_rubripes
ENSCHOG00000010245	PUM1	93	65.542	ENSTNIG00000016983	pum1	93	66.337	Tetraodon_nigroviridis
ENSCHOG00000010245	PUM1	80	93.983	ENSTBEG00000013810	PUM1	82	93.983	Tupaia_belangeri
ENSCHOG00000010245	PUM1	85	95.854	ENSTTRG00000007436	PUM1	83	95.854	Tursiops_truncatus
ENSCHOG00000010245	PUM1	80	96.115	ENSUAMG00000018262	-	89	96.115	Ursus_americanus
ENSCHOG00000010245	PUM1	93	96.115	ENSUMAG00000009211	PUM1	99	96.264	Ursus_maritimus
ENSCHOG00000010245	PUM1	86	95.973	ENSVPAG00000005902	PUM1	86	95.973	Vicugna_pacos
ENSCHOG00000010245	PUM1	93	95.977	ENSVVUG00000014631	PUM1	99	95.977	Vulpes_vulpes
ENSCHOG00000010245	PUM1	93	81.714	ENSXETG00000012904	pum1	93	82.000	Xenopus_tropicalis
ENSCHOG00000010245	PUM1	93	65.459	ENSXMAG00000002945	pum1	93	65.260	Xiphophorus_maculatus